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Journal of Clinical Microbiology, July 1998, p. 1864-1870, Vol. 36, No. 7
Department of Biochemistry and Biotechnology,
Received 3 December 1997/Returned for modification 13 February
1998/Accepted 10 April 1998
Quantification of human immunodeficiency virus type 1 (HIV-1) RNA
in plasma has rapidly become an important tool in basic HIV research and in the clinical care of infected individuals. Here, a
quantitative HIV assay based on competitive reverse transcription-PCR with multiple competitors was developed. Four RNA competitors containing identical PCR primer binding sequences as the viral HIV-1
RNA target were constructed. One of the PCR primers was fluorescently labeled, which facilitated discrimination between the
viral RNA and competitor amplicons by fragment analysis with conventional automated sequencers. The coamplification of known amounts
of the RNA competitors provided the means to establish internal
calibration curves for the individual reactions resulting in exclusion
of tube-to-tube variations. Calibration curves were created from the
peak areas, which were proportional to the starting amount of each
competitor. The fluorescence detection format was expanded to provide a
dynamic range of more than 5 log units. This quantitative assay allowed
for reproducible analysis of samples containing as few as 40 viral
copies of HIV-1 RNA per reaction. The within- and between-run
coefficients of variation were <24% (range, 10 to 24) and <36%
(range, 27 to 36), respectively. The high reproducibility (standard
deviation, <0.13 log) of the overall procedure for quantification of
HIV-1 RNA in plasma, including sample preparation, amplification, and
detection variations, allowed reliable detection of a 0.5-log
change in RNA viral load. The assay could be a useful tool for
monitoring HIV-1 disease progression and antiviral treatment and can
easily be adapted to the quantification of other pathogens.
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Use of Multiple Competitors for Quantification of
Human Immunodeficiency Virus Type 1 RNA in Plasma
*
Corresponding author. Mailing address: Department of
Biochemistry and Biotechnology, KTH, Royal Institute of Technology,
S-100 44 Stockholm, Sweden. Phone: 46 8 790 87 58. Fax: 46 8 24 54 52. E-mail: joakim.lundeberg{at}biochem.kth.se.
Journal of Clinical Microbiology, July 1998, p. 1864-1870, Vol. 36, No. 7
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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