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Journal of Clinical Microbiology, February 1999, p. 333-338, Vol. 37, No. 2
Sezione di Microbiologia,
Received 14 January 1998/Returned for modification 29 July
1998/Accepted 13 October 1998
An in-house reverse transcription (RT)-competitive PCR (RT-cPCR)
for the quantitation of human immunodeficiency virus type 1 (HIV-1) RNA
in plasma samples was developed and validated. The procedure involves
(i) extraction of RNA with spin columns, (ii) ready-to-use
bead-mediated RT, (iii) competitive PCR in a microtiter plate, (iv)
agarose gel electrophoresis of the reaction products, and (v)
densitometric analysis of the digitized image of the gel. Quadruplicate
tests and dilution studies showed that the sensitivity and intertest
coefficient of variability of the RT-cPCR are comparable to those of
the reference AMPLICOR HIV-1 MONITOR test. The results obtained by the
two assays with a panel of 45 clinical samples were in good agreement
(mean difference, 0.36 ± 0.25 log units). Analysis of 1,982 clinical samples by the in-house RT-cPCR yielded the typical range of
plasma HIV-1 RNA levels with the expected inverse correlation between
CD4 counts and HIV-1 RNA titers. In addition, testing of plasma from 36 subjects at weeks 0 and 4 with respect to the time of initiation of
protease inhibitor therapy detected a significant decrease in HIV-1
viremia. The mean reduction in the HIV-1 RNA level was 0.914 log unit
for those receiving saquinavir (P = 0.0210), 1.584 log
units for those receiving indinavir (P = 0.0047), and
1.904 log units for those receiving ritonavir (P < 0.0001). The in-house RT-cPCR assay is simple to develop and perform
and allows quantitation of HIV-1 RNA in 100 to 200 samples per operator
per week. Since the cost is 1/8 to 1/10 of those of reference
commercial assays, this procedure could be conveniently used in
medium-scale laboratories.
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Clinical Evaluation of an In-House Reverse
Transcription-Competitive PCR for Quantitation of Human
Immunodeficiency Virus Type 1 RNA in Plasma
*
Corresponding author. Mailing address: Sezione di
Microbiologia, Dipartimento di Biologia Molecolare, Università di
Siena, Via Laterina 8, 53100 Siena, Italy. Phone: 39 577 263850. Fax: 39 577 263870. E-mail: zazzi{at}cuces.unisi.it.
Journal of Clinical Microbiology, February 1999, p. 333-338, Vol. 37, No. 2
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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