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Journal of Clinical Microbiology, August 2001, p. 2794-2798, Vol. 39, No. 8
0095-1137/01/$04.00+0   DOI: 10.1128/JCM.39.8.2794-2798.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.

Detection of Dengue Viral RNA Using a Nucleic Acid Sequence-Based Amplification Assay

Shuenn-Jue L. Wu,1,2,* Eun Mi Lee,3 Ravithat Putvatana,1 Roxanne N. Shurtliff,3 Kevin R. Porter,4 Wuryadi Suharyono,5 Douglas M. Watts,6 Chwan-Chuen King,7 Gerald S. Murphy,1,2 Curtis G. Hayes,1 and Joseph W. Romano3

Viral Diseases Department, Naval Medical Research Center, Silver Spring, Maryland 20910-75001; Departments of Preventive Medicine and Biometrics and Medicine, Uniformed Services University of the Health Sciences, Bethesda, Maryland 208142; Department of Cell Biology, Advanced BioScience Laboratories, Inc., Kensington, Maryland 20895-10783; Naval Medical Research Unit 2, APO AP 96520-81324; National Institute of Health Research and Development, Ministry of Health, Jakarta, Indonesia5; Naval Medical Research Center Detachment, AMEMB-NAMRID, APO AA 340316; and Institute of Epidemiology, National Taiwan University, Taipei, Taiwan, Republic of China7

Received 7 February 2001/Returned for modification 3 April 2001/Accepted 26 May 2001

Faster techniques are needed for the early diagnosis of dengue fever and dengue hemorrhagic fever during the acute viremic phase of infection. An isothermal nucleic acid sequence-based amplification (NASBA) assay was optimized to amplify viral RNA of all four dengue virus serotypes by a set of universal primers and to type the amplified products by serotype-specific capture probes. The NASBA assay involved the use of silica to extract viral nucleic acid, which was amplified without thermocycling. The amplified product was detected by a probe-hybridization method that utilized electrochemiluminescence. Using normal human plasma spiked with dengue viruses, the NASBA assay had a detection threshold of 1 to 10 PFU/ml. The sensitivity and specificity of the assay were determined by testing 67 dengue virus-positive and 21 dengue virus-negative human serum or plasma samples. The "gold standard" used for comparison and evaluation was the mosquito C6/36 cell culture assay followed by an immunofluorescent assay. Viral infectivity titers in test samples were also determined by a direct plaque assay in Vero cells. The NASBA assay was able to detect dengue viral RNA in the clinical samples at plaque titers below 25 PFU/ml (the detection limit of the plaque assay). Of the 67 samples found positive by the C6/36 assay, 66 were found positive by the NASBA assay, for a sensitivity of 98.5%. The NASBA assay had a specificity of 100% based on the negative test results for the 21 normal human serum or plasma samples. These results indicate that the NASBA assay is a promising assay for the early diagnosis of dengue infections.


* Corresponding author. Mailing address: Viral Diseases Department, Code 41, Naval Medical Research Center, 503 Robert Grant Ave., Silver Spring, MD 20910-7500. Phone: (301) 319-7442. Fax: (301) 319-7451. E-mail: wus{at}nmrc.navy.mil.


Journal of Clinical Microbiology, August 2001, p. 2794-2798, Vol. 39, No. 8
0095-1137/01/$04.00+0   DOI: 10.1128/JCM.39.8.2794-2798.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.



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