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Journal of Clinical Microbiology, November 2006, p. 4000-4008, Vol. 44, No. 11
0095-1137/06/$08.00+0 doi:10.1128/JCM.00175-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Anne-Sophie Carrara,1,2
Haolin Ni,1,2
Ivorlyne P. Greene,1,2,
and
Scott C. Weaver1,2,3*
Center for Biodefense and Emerging Infectious Diseases,1 Department of Pathology,2 Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas 77555-06093
Received 26 January 2006/ Returned for modification 6 May 2006/ Accepted 22 August 2006
Due to the lack of a rapid, simple, and inexpensive assay for detecting alphavirus infections, we combined a reverse transcription-PCR with an enzyme-linked immunosorbent assay (RT-PCR-ELISA) to identify human pathogenic alphaviruses that are endemic in the New World. By combining the sensitivity of PCR, the detection simplicity of ELISA, and the specificities of DNA probes, this method rapidly detected and differentiated closely related species and subtypes of several medically important alphaviruses. After an amplification using RT-PCR with primers targeting conserved sequences in the nonstructural protein 1 gene, sequence-specific, biotin-labeled probes targeted against Venezuelan, eastern, and western equine encephalitis or Mayaro virus genes were used for the detection of amplicons using ELISA. The assay is simple, fast, and easy to perform in an ordinary diagnostic laboratory or clinical setting. Nucleic acid derived from cell cultures infected with several alphaviruses, clinical specimens, and mosquito pools as well as frozen and paraffin-embedded animal tissues were detected and identified within 6 to 7 h in a sensitive and specific manner.
Published ahead of print on 6 September 2006.
Present address: Department of Microbiology, Mount Sinai School of Medicine, 1 Gustave L. Levy Place, New York, NY 10029.
Present address: W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe St., Baltimore, MD 21205.
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