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Journal of Clinical Microbiology, October 1998, p. 3032-3039, Vol. 36, No. 10
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Comparison of PCR, Nested PCR, and Random Amplified Polymorphic
DNA PCR for Detection and Typing of Ureaplasma
urealyticum in Specimens from Pregnant Women
Christine L.
Knox and
Peter
Timms*
Centre for Molecular Biotechnology, School of
Life Sciences, Queensland University of Technology, Brisbane,
Queensland 4001, Australia
Received 9 March 1998/Returned for modification 29 April
1998/Accepted 21 July 1998
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ABSTRACT |
A PCR assay, using three primer pairs, was developed for the
detection of Ureaplasma urealyticum, parvo biovar,
mba types 1, 3, and 6, in cultured clinical specimens. The
primer pairs were designed by using the polymorphic base positions
within a 310- to 311-bp fragment of the 5' end and upstream control
region of the mba gene. The specificity of the assay was
confirmed with reference serovars 1, 3, 6, and 14 and by the
amplified-fragment sizes (81 bp for mba 1, 262 bp for
mba 3, and 193 bp for mba 6). A more sensitive
nested PCR was also developed. This involved a first-step PCR, using
the primers UMS-125 and UMA226, followed by the nested
mba-type PCR described above. This nested PCR enabled the
detection and typing of small numbers of U. urealyticum
cells, including mixtures, directly in original clinical specimens. By using random amplified polymorphic DNA (RAPD) PCR with seven arbitrary primers, we were also able to differentiate the two biovars of U. urealyticum and to identify 13 RAPD-PCR subtypes. By applying these subtyping techniques to clinical samples collected from pregnant
women, we established that (i) U. urealyticum is often a
persistent colonizer of the lower genital tract from early midtrimester until the third trimester of pregnancy, (ii) mba type 6 was
isolated significantly more often (P = 0.048) from
women who delivered preterm than from women who delivered at term,
(iii) no particular ureaplasma subtype(s) was associated with placental
infections and/or adverse pregnancy outcomes, and (iv) the ureaplasma
subtypes most frequently isolated from women were the same subtypes
most often isolated from infected placentas.
 |
INTRODUCTION |
Ureaplasma urealyticum is
a prevalent (40 to 80%) colonizer of the lower genital tract of
pregnant women (5, 16) and is capable of causing serious
infection in pregnant women and neonates. In pregnant women, U. urealyticum is a significant cause (often the sole isolate) of
chorioamnionitis (13, 16, 19, 20, 26), frequently with a
sequela of adverse pregnancy outcome. U. urealyticum may be
acquired by neonates either in utero (27) or by vertical
transmission at birth (1, 12, 32) and can cause pneumonia
(27), pulmonary hypertension (37), chronic lung
disease (4), and meningitis (10, 38) of the
newborn. While up to 80% of women may be colonized with U. urealyticum, only a small proportion of these women develop
chorioamnionitis. It is unknown why some women have adverse pregnancy
outcomes, but it has been suggested that these may be due to either
infections ascending from the lower genital tract (15),
colonizers present in the endometrium at the time of embryo
implantation (5), maternal risk factors, or the individual
pathogenicities of ureaplasma isolates (5).
Of the various techniques used to subtype U. urealyticum,
serotyping has been the most widely used method. Of the 14 serovars of
U. urealyticum (30), serovar 3 is most frequently
isolated from women (9, 22, 24). Some studies (22, 28,
34) have shown that serovars 4 and 8 are more frequently
associated with infections, while other workers have shown that there
is no particularly invasive U. urealyticum serovar(s)
(40). The 14 serovars can be grouped into two biovars
(8, 14, 29). The parvo biovar contains serovars 1, 3, 6, and
14, while the remaining 10 serovars belong to the T960 biovar. The two
U. urealyticum biovars have also been distinguished by PCR
of the MB (for multiple-banded) antigen gene (mba)
(35), PCR of the 16S rRNA gene (31), and arbitrarily primed PCR (11, 18). Studies using serotyping (9, 22) and biotyping (by PCR) (1) to type
clinical U. urealyticum isolates from pregnant women have
demonstrated that parvo biovar ureaplasmas (64 to 95% of isolates) are
isolated more frequently than are T960 biovar ureaplasmas (20 to 42%), regardless of the pregnancy outcome (i.e., normal delivery or adverse
pregnancy outcome). However, Abele-Horn et al. (1) further
showed that the T960 biovar was isolated significantly more often from
women with miscarriages (42%) and pelvic inflammatory disease (57%)
than from pregnant women who were admitted for delivery (20%).
Recently we have described a subtyping method for U. urealyticum based on polymorphisms within the sequence of the 5'
end and the upstream control region of the mba gene
(17). By direct sequencing of the mba gene
fragment, we defined five mba types (mba 1, 3, and 6 [parvo biovar] and mba 8 and X [T960 biovar]) and
nine mba subtypes (mba 1a, 1b, 3a, 3b, 3c, 3d,
3e, 6a, and 6b, all of the parvo biovar) of U. urealyticum.
The major objectives of the present study were to develop both a PCR
assay for the direct detection of mba types in clinical
specimens and an optimized random amplified polymorphic DNA (RAPD) PCR
protocol for subtyping ureaplasma isolates. These two molecular
subtyping methods were then used to test clinical isolates (collected
during a previous prospective study) in order to establish the
prevalence of the mba and RAPD-PCR types within a subset of
this population and to determine if any of these types are of clinical
relevance in invasive genital tract infections.
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MATERIALS AND METHODS |
Clinical samples.
A prospective clinical study was
previously conducted at the public antenatal clinic of the Toowoomba
Base Hospital, Queensland, Australia, to investigate U. urealyticum colonization rates in an Australian population and to
determine whether either vaginal or endocervical ureaplasma
colonization was associated with adverse pregnancy outcome
(16). Briefly, the 162 women enrolled in this study were
evaluated for lower genital tract colonization by culture at their
first antenatal visit (8 to 25 weeks of gestation), and 120 women were
retested at 28 weeks of gestation. Placentas from 92 of these women
were also cultured. U. urealyticum was isolated from 57% of
the women at their first antenatal visit, from 53% of them at 28 weeks
of gestation, and from 17% of the placentas. U. urealyticum
culture-positive clinical samples from this prospective study (33 samples in total from 17 women) were tested in the present study. The
selection of clinical samples (22 endocervical samples, 4 vaginal
samples, and 7 placental samples) was based on the pregnancy outcome
and/or histological examination of the placenta. We selected 14 samples
from seven women who delivered preterm and 18 samples from nine women
who delivered at term, and there was one other sample whose gestation
details were unknown.
Reference serovars.
The reference strains of U. urealyticum (serovars 1, 3, 6, 14, and 8) used in this study were
provided by G. L. Gilbert (University of Sydney, Sydney, New South
Wales, Australia), with the kind permission of H. L. Watson
(University of Alabama, Birmingham). Serovars 1, 3, 6, and 8 were
originally obtained from E. A. Freundt (Institute of Medical
Microbiology, University of Aarhus, Aarhus, Denmark), and serovar 14 was originally obtained from J. A. Robertson (Department of
Medical Microbiology and Infectious Diseases, University of Alberta,
Edmonton, Alberta, Canada).
Culture of U. urealyticum.
All specimens were
collected and cultured as previously described (16).
Briefly, vaginal and endocervical samples were collected during a
speculum examination. The chorionic surface of the placenta was
sterilized with burning alcohol, and, by means of aseptic technique, a
block of villous tissue was excised. These samples and the reference
serovars were inoculated into U9B or 10B liquid broth (33,
34) and onto A8 agar medium (modified; Becton Dickinson, Brisbane, Queensland, Australia). Four serial 10-fold dilutions of the
liquid broth were made, and growth was detected by an alkaline shift.
The A8 plates were incubated at 37°C under an atmosphere of 95%
N2 and 5% CO2, and colonies were detected
microscopically.
DNA preparation.
Ureaplasma DNA was prepared by one of two
methods (2). In the first method, stored clinical samples
(U9B broth) of U. urealyticum (cultures or original clinical
specimens) were thawed, and 250 µl of each sample was centrifuged at
15,900 × g (Microfuge E; Beckman, Fullerton, Calif.)
for 20 min at 4°C. Each pellet was resuspended in 50 µl of solution
A (10 mM Tris HCl [pH 8.3], 100 mM KCl, 2.5 mM MgCl2) and
50 µl of solution B (10 mM Tris HCl [pH 8.3], 2.5 mM
MgCl2, 1% Tween 20, 1% Triton X-100) with 120 µg of
proteinase K per ml; it was incubated for 1 h at 60°C, followed by 10 min at 94°C, and then cooled. Five microliters of each prepared sample was used immediately for mba gene PCR or stored at
20°C until PCR analysis. If larger quantities of DNA were required, the second method was used. In this procedure, stored clinical samples
(original specimens or cultures) and cultures of reference serovars 1, 3, 6, 14, and 8 were inoculated individually into 25 ml of 10B broth
and incubated at 37°C until an alkaline color change was observed.
Each broth culture was then centrifuged at 24,000 × g
(Beckman model J2-21M/E) for 1 h. The pellets were each washed in
2 ml of cold Tris-EDTA buffer and recentrifuged for 15 min at
15,900 × g (Beckman Microfuge E) at 4°C. Each pellet was resuspended in equal volumes (250 µl) of solutions A and B with
120 µg of proteinase K per ml and then incubated for 1 h at
60°C. The samples were cooled, and the DNA was extracted
(36) with equal volumes of (i) phenol, (ii)
phenol-chloroform-isoamyl alcohol (25:24:1, vol/vol/vol), and (iii)
chloroform-isoamyl alcohol (24:1, vol/vol) and then precipitated from
the aqueous phase with 0.1 volume of 3 M sodium acetate (pH 5.2) and 2 volumes of ethanol. Each DNA pellet was resuspended in 25 µl of
water.
Detection of types mba 1, mba 3, and
mba 6 in cultures by PCR.
By exploiting the
polymorphic base positions within the mba fragment
(17), we designed three sets of primers which selectively amplify the mba types (1, 3, and 6): UMS-83
(5'-GTAGAAATTATGTAAGATTG-3') and UMA-41
(5'-AAAATATGTCATTTTATTGTC-3') for mba 1, UMS-81
(5'-AGAAATTATGTAAGATTACC-3') and UMA144
(5'-CGCATAAAAACTTTTACCG-3') (which will not amplify fragments from serovar 14 [mba type 3e]) for
mba 3, and UMS-53 (5'-GTGTTCATATTTTTTACTAG-3')
and UMA122 (5'-GTTGATTTAACAAATTGGC-3') for
mba 6. The primers were designated UMS or UMA to indicate whether they were derived from the sense (S) or antisense (A) ureaplasma mba gene. The number refers to the location on
the mba gene map (for serovar 3) (39) and
corresponds to the 3'-most base of the primer.
One-step mba PCR conditions.
Separate PCRs were
performed for each primer pair. The reaction mixture (50 µl)
contained 1 U of Taq polymerase (Boehringer GmbH, Mannheim,
Germany), 10× PCR buffer (100 mM Tris-HCl, 15 mM MgCl2,
500 mM KCl, pH 8.3; Boehringer), 200 µM each deoxynucleoside triphosphate (Boehringer), water, 20 pmol of each primer, and DNA
template (5 to 10 µl of prepared sample or 1 µl of extracted DNA).
The three PCRs were individually optimized, and the reaction parameters
for each primer pair were critical. The DNA thermal cycler 480 (Perkin-Elmer Cetus) was programmed for 1 cycle of denaturation at
94°C for 2 min followed by 35 cycles (mba 3 and mba 6) or 40 cycles (mba 1) consisting of
denaturation at 94°C for 30 s, annealing for 45 s at 56°C
(mba 1) or 55°C (mba 3 and mba 6),
and extension at 72°C for 45 s. This was followed by a final
cycle of 72°C for 5 min. PCR products were separated by electrophoresis in a 2.5% agarose gel and visualized by ethidium bromide staining. Reference serovars 1, 3, 6, and 14 were used as
controls.
Nested PCR for the detection of types mba 1, mba 3, and mba 6 in original clinical
specimens.
While one-step mba PCR detected the
mba types in cultures of clinical specimens, it was not
sufficiently sensitive to detect low levels of U. urealyticum in the original clinical specimens. We therefore
developed a nested PCR which also targeted the mba gene to
test for U. urealyticum types in the original clinical specimens. We used the outer-primer pair UM-1 (UMS-125 and UMA226) to
amplify a 403- or 404-bp mba fragment from parvo biovar
ureaplasmas as previously described (17) followed by three
separate reactions using the inner-primer pairs for mba 1 (UMS-83 and UMA-41), mba 3 (UMS-81 and UMA144), and
mba 6 (UMS-53 and UMA122). The reference serovars 1, 3, 6, and 14 were also tested by nested mba PCR as controls. For
the outer-primer reaction, we used 5 µl of the prepared clinical
sample (2) in a 50-µl reaction mixture and previously described reaction conditions (17). For the nested
mba PCR, we used 1 µl of the outer-primer reaction mixture
and the mba reaction conditions. Again, these reactions were
individually optimized, and it was found to be necessary to increase
the stringency of these reactions by using annealing temperatures of
57°C (mba 1 and 6) and 58°C (mba 3). PCR
products were separated by electrophoresis in a 2.5% agarose gel and
visualized by ethidium bromide staining.
RAPD-PCR profiling of U. urealyticum. (i)
Primers.
Twenty 10-base primers (FPK-2; Bresatec, Adelaide, South
Australia, Australia) were screened, and from these, 14 primers (FPK 2-01 [5' AAGCTGCGAG 3'], 2-03 [5' CTGGCGTGAC 3'],
2-06 [5' TTCGAGCCAG 3'], 2-07 [5' GAACGGACTC
3'], 2-08 [5' GTCCCGACGA 3'], 2-09 [5' TGTCATCCCC 3'], 2-10 [GGTGATCAGG 3'], 2-11 [5' CCGAATTCCC 3'], 2-12 [5' GGCTGCAGAA 3'],
2-13 [5' CTGACCAGCC 3'], 2-17 [5' CACAGGCGGA 3'], 2-18 [5' TGACCCGCCT 3'], 2-19 [5'
GGACGGCGTT 3'], and 2-20 [5' TGGCGCAGTG 3']) were
selected for use in RAPD-PCR profiling of 22 clinical isolates.
(ii) RAPD-PCR.
RAPD-PCR was performed in a total volume of
25 µl containing 1 U of Taq polymerase (Perkin-Elmer,
Scoresby, Victoria, Australia), 10× PCR buffer (0.67 M Tris-HCl [pH
8.0], 0.098 M
-mercaptoethanol, 0.1% Tween 20), 125 µM each
deoxynucleoside triphosphate (Boehringer), 40 pmol of arbitrary primer,
5.5 mM MgCl2, and 1 µl of extracted DNA template. The
optimum DNA concentration for this RAPD-PCR was found to be in the
range of 0.1 to 1.56 ng/µl; however, most DNA samples were tested at
a concentration of 0.35 ng/µl. The reaction mixture was overlaid with
1 drop of paraffin oil. To avoid contamination, preparation of the PCR
master mix (for mba PCR and RAPD-PCR) and addition of DNA
were conducted in separate rooms and a negative control was always
included. Amplification was performed in a Perkin-Elmer thermal cycler,
with a first cycle of denaturation at 95°C for 5 min followed by 35 cycles consisting of denaturation for 1 min at 91°C, annealing for 1 min at 38°C, and extension for 2 min at 72°C. The RAPD-PCR products
were separated by electrophoresis in 1.5% agarose gels at 100 V for 75 min. The gels were poststained with ethidium bromide for 15 min,
destained with 1 mM MgSO4 for 20 min, visualized with UV
light, and digitized by using Grab-IT (Ultraviolet Products LTD,
Cambridge, England, United Kingdom). The banding patterns of the
amplification products were compared visually, and polymorphic bands
were scored as either present or absent. The clinical isolates were
classified into RAPD subtypes on the basis of these polymorphisms.
Statistical analysis.
The data were analyzed by using a
binomial test for proportions on SPSS version 7.5 to determine if there
were statistically significant differences in the prevalence of
U. urealyticum mba types between women who delivered preterm
and those who delivered at term.
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RESULTS |
mba subtypes of U. urealyticum detected in
clinical samples.
Using the mba subtyping scheme
(17), a single (dominant) mba subtype was
identified in each of the 33 cultured clinical samples that were tested
(Table 1). Ureaplasmas of the parvo biovar were clearly the most prevalent, being detected in 31 of the 33 samples tested. The subtypes mba 3a and mba 1a
were detected most frequently in this population. Subtype
mba 3a was detected in 13 clinical samples from eight
different patients, and subtype mba 1a was identified in 7 samples from four different women (Table 1).
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TABLE 1.
Dominant mba subtype detected by direct
sequencing of the mba gene fragment of each cultured
clinical specimen
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Single-step mba PCR of cultures.
The
mba 1 primer pair (UMS-83 and UMA-41) amplified an 81-bp
product from reference serovar 1 and from nine clinical isolates, the mba 3 primer pair (UMS-81 and
UMA144) amplified a 262-bp product from serovar 3 and from 13 clinical
isolates (excluding serovar 14), and the mba 6 primer pair
(UMS-53 and UMA122) produced a 193-bp fragment from serovar 6 and from
10 clinical isolates (Table 2; Fig.
1). mba type 1, 3, and/or 6 of
the parvo biovar was detected in 27 of the 28 clinical samples tested
(Table 2) (5 samples were no longer available for testing). Single-step
mba PCR not only detected the dominant U. urealyticum
mba subtype; it also detected mixed mba types in five
samples (921p, 924e1, 931e1, 1012e2, and 1040v1) (Table 2). The
remaining sample (1110p) contained mba type 8, a biovar T960
U. urealyticum isolate which was previously identified by
direct sequencing of the mba gene fragment.

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FIG. 1.
Agarose gel electrophoresis of PCR products generated by
mba outer primers UMS-125 and UMA226 (lanes 1 to 5, 10, and
12 only) (A), mba 1 primers UMS-83 and UMA-41 (B),
mba 3 primers UMS-81 and UMA144 (C), and mba 6 primers UMS-53 and UMA122 (D). Lanes: 1 to 4, controls (serovars 1, 3, 6, 14, and 8, respectively); 6 to 14, samples 1040v1 (culture), 928e1
(culture), 1043e1 (culture), 1020e2 (culture), 1020e2 (original
specimen), 931e1 (culture), 931e1 (original specimen), 921e1 (culture),
and 921p (culture), respectively; MW, DNA molecular size markers (72 to
1,353 bp; Boehringer).
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Nested mba PCR of original clinical
specimens.
During the prospective study, original vaginal
and endocervical samples were stored (16) at
70°C. (No placental samples were stored.) These original lower
genital tract specimens were tested by nested mba PCR.
At the time of testing, 23 original specimens (of the 26 lower genital
tract samples investigated in this study) were available for testing;
the other 3 original specimens had been used previously. The results of
the nested mba PCRs were consistent with the results
obtained by mba gene fragment sequencing and by single-step
mba PCR of cultured specimens (Table 2). For 18 of these 23 samples, both single-step mba PCR results (on cultured
specimens) and nested mba PCR results (on original
specimens) were available. Different results were obtained for three
samples (924e1, 1004e1, and 1040v1); the nested PCR did not detect an
mba type, but it was subsequently detected after culture of
the specimen. Nested mba PCR confirmed the presence of the
mba subtype detected by direct sequencing of the
mba fragment in four of the remaining five original samples
and identified mixed mba types in a further three samples
(931e2, 1044e1, and 1140e1). We also showed that sample 1016e1 was a
mixture containing mba type 1 (detected by nested PCR) and
mba X, a T960 biovar isolate. This result is interesting
since the parvo biovar mba type 1 was not detected in the
cultured specimen by the UM-1 primer pair because only a single product
of 448 bp (T906 biovar) was amplified. This suggests that only very
small numbers of type mba 1 cells were present in the
original specimen.
RAPD-PCR subtypes of U. urealyticum.
RAPD-PCR profiling
was performed on 22 cultured clinical U. urealyticum
isolates. Only available samples that contained a single mba
subtype were tested. The 14 arbitrary 10-base primers generated two
broadly distinct profiles which clearly differentiated the parvo biovar
(21 isolates) from the T960 biovar (a single isolate, 1110p) (Fig.
2). The parvo biovar isolates were
further distinguished by polymorphic bands generated by seven of these arbitrary primers (FPK 2-01, 2-07, 2-09, 2-11, 2-12, 2-17, and 2-18).
Each of these primers was retested to ensure reproducibility of
results. Figure 2 shows a typical profile and polymorphic bands generated with the primer FPK 2-11. All of the profiles generated were
examined visually, and polymorphic bands were scored (as present or
absent). The parvo biovar ureaplasmas were differentiated into 13 RAPD
subtypes on the basis of nine polymorphic bands (Table 3).

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FIG. 2.
RAPD-PCR profiles (negative image of 1.5% agarose gels)
of 15 U. urealyticum clinical isolates, obtained by using
arbitrary primer FPK 2-11. Lanes 1 to 15, 921e1, 921e2, 924p, 928e1,
928e2, 928p, 1110e1, 1110p, 1158v2, 1158e2, 1043e1, 1043e2, 1043p,
1040e2, and 1040p, respectively. Lane 8 contains the single T960 biovar
isolate. Bands A (480 bp) and B (560 bp) are the polymorphic bands
scored in Table 3. MW, DNA molecular size marker XIV (Boehringer).
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RAPD-PCR subtyping was more discriminatory than
mba
subtyping, since the 22 clinical isolates were divided into 8
mba subtypes
and 13 RAPD subtypes (Table
3). Three of the
mba subtypes (1a,
3a, and 6a) comprised more than one RAPD
subtype (Table
3). As
expected, no RAPD subtype was found in more than
one
mba subtype.
Relationship of U. urealyticum subtypes to adverse
pregnancy outcome.
In the present study, we have subtyped clinical
isolates collected from pregnant women in a previous prospective study.
mba and RAPD-PCR subtyping showed that eight of these
pregnant women were colonized in the lower genital tract with the same
ureaplasma subtype(s) from early midtrimester until 28 weeks of
gestation. The same mba and/or RAPD subtype(s) was isolated
at these two time points from patients 912, 921, 928, 931, 1012, 1032, 1040, and 1043 (Table 2). Furthermore, the ureaplasma subtypes that were isolated from the lower genital tracts of patients 928, 1040, and
1043 during pregnancy were subsequently detected in their placental
samples after delivery. An additional subtype was introduced to the
lower genital tract of patient 1012 during the pregnancy and was
detected at 28 weeks of gestation; a subtype present at the first
antenatal visit of patient 1040 was not subsequently detected at 28 weeks.
Using single-step
mba and nested
mba PCR, we
detected mixed
U. urealyticum types in 9 of the 33 clinical
samples tested (with
42 isolates being detected in total) and
established that 10 women
(patients 912, 921, 924, 931, 1012, 1016, 1040, 1044, 1110, and
1140) of the 17 tested in this study harbored
more than one
mba subtype in the lower genital tract or the
placenta.
A comparison of the prevalences of the parvo biovar
mba
types in women who delivered preterm and those who delivered at term
revealed that
mba type 6 was detected significantly more
often
(
P = 0.048) in the former (57.2%) than in women
with term deliveries
(22.2%) (Table
4).
Seven placental samples in total were subtyped in this study (Table
2).
In five of these placentas (patients 921, 924, 928,
1040, and 1110)
there was histological evidence of infection.
Three women who delivered
preterm (patients 921, 924, and 1110)
were diagnosed with
chorioamnionitis, and
mba subtypes 1a, 3a,
6, and 8a
were detected in their placental samples. Mixed subtypes
(3a and 6)
were detected in sample 921p. Ascending infection and
funisitis
were histologically diagnosed in two placentas (patients
928 and 1040),
and
mba subtypes 1a and 3a were detected. In the
remaining
two placentas (patients 912 and 1043), no significant
abnormalities
were diagnosed; however,
mba subtypes 3c and 6d
were
detected. Different RAPD subtypes (1, 2, 5, 9, 12, or 13)
were isolated
from each of the placental samples tested (Table
2).
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DISCUSSION |
Previously we described a U. urealyticum subtyping
scheme based on sequence variations of the mba gene and its
upstream region (17). In the present study, we developed a
more convenient, nonsequencing method of mba typing that
will selectively detect U. urealyticum mba types 1, 3, and 6 in clinical samples by either a single-step or a nested mba
PCR. We also developed a RAPD-PCR subtyping method for U. urealyticum. mba and RAPD-PCR subtyping are both high-resolution
molecular techniques which we have used to further investigate the
nature of lower and upper genital tract U. urealyticum
infections in pregnant women.
We designed three primer pairs by exploiting the polymorphisms within
the mba gene fragment (17). These primer pairs
selectively amplified gene fragments from mba types 1, 3 (excluding serovar 14), and 6; detected mixed U. urealyticum
infections; and were able to detect mba types 1, 3, and 6 in
original clinical specimens when used in a nested PCR. The specificity
of the PCR assays was confirmed by control reactions with reference
serovars 1, 3, 6, and 14 and by the sizes of the amplified gene
fragments. The advantage of this three-primer-set PCR assay is that it
can detect mixed U. urealyticum infections in patients by
both single-step mba PCR and nested mba PCR,
whereas direct sequencing of the mba gene fragment detects
only the dominant U. urealyticum strain present. Mixed
serovars have previously been detected by serotyping ureaplasma colonies on primary isolation plates (22, 25). However, it has been suggested (25) that expanding a clinical sample by culture prior to subtyping (a requirement of other serotyping techniques) may prevent the detection of U. urealyticum
serovars which are more fastidious and therefore grow more slowly or
those that are present in lower concentrations. In the present study, in 15 of the 18 specimens tested, the same mba type(s) was
detected by both single-step (cultured specimen) and nested
mba (noncultured specimen) PCR (Table 2). However, in the
remaining three specimens (924e1, 1004e1, and 1040v1), an
mba subtype was detected by single-step PCR only after
culture of the clinical specimen. Presently, when testing original
samples by nested PCR, it is still necessary to confirm the presence of
ureaplasmas by culture, since a visible amplification product is not
always detected by gel electrophoresis after PCR with the outer primers
and mba types other than mba 1, 3, and 6 may be
present in the sample. However, by sequencing alternate locations
within the mba gene and other clinical isolates and
reference serovars, it should be possible to expand the assay to also
detect serovar 14 and the T960 biovar U. urealyticum
strains.
In the present study, we subtyped 33 clinical samples from 17 pregnant
women and analyzed 42 different U. urealyticum isolates. Of
these isolates, 95% (40 of 42) were of the parvo biovar and 40% (17 of 42) were of mba type 3, and 13 of these isolates had an
mba 3a sequence identical to that of serovar 3. Of the 33 samples tested by mba PCR and/or nested mba PCR,
9 (27%) were shown to be mixtures of more than one ureaplasma subtype;
these included eight lower genital tract samples and one placental
specimen. In this study, clinical samples collected from 17 different
women were tested, and 10 (59%) of these women were found to harbor mixed ureaplasma subtypes. These results are consistent with previous reports. Four previous studies, three using serotyping (9, 22,
24) and the other employing PCR (1), have shown that ureaplasmas of the parvo biovar are more frequently isolated from women
(64 to 94% of all ureaplasmas isolated). These serotyping studies also
demonstrated that serovar 3 is the most prevalent strain (28 to 83%)
isolated from women and their partners (9, 22, 24) and that
mixed serovars could be detected in 57.5% of couples (24).
Furthermore, the detection of mixed ureaplasma subtypes in this study
does not appear to be clinically significant, since mixed subtypes were
detected in both women who delivered preterm (three of seven women) and
those who delivered at term (four of nine women) and in only one of the
five placental samples with histological evidence of infection.
We also used RAPD-PCR for subtyping. The 22 clinical samples (from 12 different patients) were separated into 13 RAPD subtypes on the basis
of nine polymorphic bands which were generated by 7 of the 14 different
arbitrary primers. Different ureaplasma RAPD subtypes were isolated
from each of the 12 patients, with two RAPD subtypes being detected in
one patient (no. 912). Grattard et al. (11, 12) and Kong et
al. (18) have previously differentiated the two biovars by
using ureaplasma reference serovars, and they also tested clinical
isolates by RAPD-PCR. Grattard et al. (12) were able to
demonstrate vertical transmission from mother to neonate. In the
present study, RAPD-PCR was more discriminative than mba
subtyping, since it clearly differentiated all of the ureaplasmas
isolated from different women as different RAPD subtypes.
Previously, Cheng et al. (6, 7) analyzed 21 clinical
isolates by immunoblotting with serotype 1-, 3-, and 6-specific monoclonal antibodies and 4 clinical isolates by immunoblotting with
type 4-specific monoclonal antibodies. Unique immunoblot patterns were
obtained for each clinical isolate, and none of the patterns was
similar to any of those produced by the reference serovars. Our
RAPD-PCR subtyping method was also able to identify unique
host-specific ureaplasma strains. RAPD-PCR is therefore well suited to
epidemiological studies for determining routes of transmission of
infection; however, the technique is technically demanding, and a
number of different primers must be screened in order to detect
sufficient polymorphic bands for subtyping.
After establishing both mba and RAPD-PCR subtyping methods,
a major goal of the study was to apply these techniques to answer a
number of critical clinical questions. First, we sought to determine whether U. urealyticum was a persistent colonizer of the
lower genital tract of pregnant women. Knox et al. (16)
previously showed that of the pregnant women colonized with U. urealyticum, 88% were colonized in the lower genital tract at
their first antenatal visit and again at 28 weeks of gestation. By
subtyping clinical isolates collected from these same women at these
different time points, we have demonstrated that U. urealyticum is a persistent colonizer of the lower genital tract.
Each of the eight women investigated in this study (patients 912, 921, 928, 931, 1012, 1032, 1040, and 1043) was colonized by the same
ureaplasma subtype at both time points. Interestingly, patient 931 was
persistently colonized with two mba types (1 and 3a), and an
additional transient ureaplasma type was detected in patients 1012 and
1040. Others (22) investigated the persistence of serotypes
by comparing 67 ureaplasma strains that were isolated from 30 patients,
and they too found that most patients harbored the same serotype in different samples.
Since only a small proportion of women colonized with ureaplasmas in
the lower genital tract develop upper genital tract infections (16), it has been postulated that some ureaplasma strains
may be more pathogenic than others and thus responsible for these invasive infections (5, 22, 24, 27, 28, 34). Previous studies have demonstrated a higher incidence of serovar 4 (22) and serovar 8 (24) U. urealyticum
in women with a history of recurrent abortion and in infertile couples,
respectively. Quinn et al. (28) also found that women who
experienced adverse pregnancy outcomes exhibited significantly elevated
mean titers to serovars 4 and 8. By contrast, in the present study we
demonstrated a significantly higher prevalence of mba type 6 in the seven women who delivered preterm than in the nine women with
term deliveries. However, our sample size was very small, and this
relationship should be investigated further in future, larger studies.
Despite the higher prevalence of mba type 6 in women
delivering preterm and being able to subtype the clinical ureaplasma isolates into 5 mba types, 9 mba subtypes, and 13 RAPD subtypes, our results strongly suggested that no single ureaplasma
subtype was responsible for all of the histologically diagnosed
placental infections and/or adverse pregnancy outcomes which were
observed. In this study we subtyped strains from seven placental
samples, five of which were directly linked to infections of the
placenta by histological examination, and detected eight different
ureaplasma isolates but only five different mba subtypes:
mba 1a (samples 924p and 1040p), mba 3a (921p and
928p), mba 3c (912p), mba 6 (921p and 1043p), and
mba 8a (1110p) (Table 2). However, two of these
mba subtypes (1a and 3a) of the parvo biovar were most frequently isolated in this study. Subtype mba 1a was
isolated from 4 patients, and mba 3a was isolated from 8 patients (of 17) (Tables 1 and 2). Different RAPD subtypes (no. 1, 2, 5, 9, 12, and 13) were detected in the six placental samples tested
(924p, 1040p, 928p, 912p, 1043p, and 1110p, respectively). The
pathogenicity of ureaplasmas therefore does not appear to be limited to
a particular subtype(s); rather, it appears that those subtypes most
frequently isolated from pregnant women are also more often isolated
from placental infections.
Finally, it is not known if upper genital tract infections are due to
ascending invasive infections or to the presence of U. urealyticum in the endometrium at the time of implantation, with
subsequent low-grade infection (5). In three of the
placental samples (912p, 921p, and 1110p) we detected an mba
subtype (mba 3c, mba 3a, and mba 8a,
respectively) which was not present in the endocervical sample(s)
collected from that patient earlier in her pregnancy (Table 2).
Furthermore, subtype mba 6 was isolated from the
endocervical sample of patient 1040 but was not subsequently present in
the placental sample. It is therefore possible that the lower genital
tract and the endometrium are separately colonized with the same and/or
different ureaplasma subtypes and that ureaplasma subtypes were already
present in the endometrium at the time of implantation and subsequently
were responsible for infection of the placenta and the adverse
pregnancy outcome. Subtyping of lower genital tract and placental
U. urealyticum clinical isolates (from the same women) did
demonstrate early ascending placental infections in two pregnant women
(patients 928 and 1040). Both these women delivered at term, and it may
well be that the ascending infections were due to the eventual loss of
integrity of the placental membranes in late pregnancy.
It has been postulated that infection of the endocervical canal may
cause cell damage which subsequently allows ascension of pathogens and
normal vaginal flora to the endometrium (23). In the present
study, we subtyped placental ureaplasma isolates from seven women. Four
of these women had a past history of human papillomavirus infection
(patients 912 and 1110) or cervical intraepithelial neoplasia (patients
1040 and 1043) (Table 2). These women were possibly at greater risk of
upper genital tract infection or colonization due to previous
infections and/or medical interventions which could have damaged the
endocervix and thus facilitated ascension of microorganisms. This
finding might suggest that women with these risk factors should be
screened for U. urealyticum during pregnancy and managed
appropriately.
McGregor et al. (21) and Carey et al. (3)
concluded that lower genital tract colonization is not predictive of
adverse pregnancy outcome; however, others (5, 13, 16, 19, 20, 26) have demonstrated that upper genital tract infections are associated with adverse pregnancy outcome. In the present study, we
have shown by molecular subtyping that different ureaplasma subtypes
can be isolated from the lower and upper genital tracts and, therefore,
lower genital tract ureaplasma subtyping is not necessarily predictive
of upper genital tract ureaplasma subtypes. Furthermore, screening
lower genital tract ureaplasmas to identify a more pathogenic
ureaplasma is neither feasible nor warranted since no particular
ureaplasma subtype(s) is consistently associated with upper genital
tract infections. It is clear that U. urealyticum is
responsible for serious infections in pregnant women, often with a
sequela of adverse pregnancy outcome, but it may well be that upper
genital tract infections occur predominantly in women with risk factors
that predispose them to infection. Further studies which both detect
and subtype ureaplasmas in placental samples, amniotic fluids, and
laparoscopically collected upper genital tract specimens are necessary
to resolve the incidence and etiology of upper genital tract infection
and colonization.
 |
ACKNOWLEDGMENTS |
We thank P. Giffard for critically appraising the manuscript, S. Mathews for technical advice and encouragement, E. Fowler for the
RAPD-PCR methodology, N. Spencer (QUT School of Mathematical Sciences)
for performing the statistical analyses, and the Faculty of Sciences at
the University of Southern Queensland for the use of equipment during
this study.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: School of Life
Sciences, Queensland University of Technology, G.P.O. Box 2434, Brisbane, QLD 4001, Australia. Phone: 61 7 3864 2120. Fax: 61 7 3864 1534. E-mail: p.timms{at}qut.edu.au.
 |
REFERENCES |
| 1.
|
Abele-Horn, M.,
C. Wolff,
P. Dressel,
F. Pfaff, and A. Zimmermann.
1997.
Association of Ureaplasma urealyticum biovars with clinical outcome for neonates, obstetric patients, and gynecological patients with pelvic inflammatory disease.
J. Clin. Microbiol.
35:1199-1202[Abstract].
|
| 2.
|
Blanchard, A.,
M. Gautier, and V. Mayau.
1991.
Detection and identification of mycoplasmas by amplification of rDNA.
FEMS Microbiol. Lett.
81:37-42.
|
| 3.
|
Carey, J. C.,
W. C. Blackwelder,
R. P. Nugent,
M. A. Matteson,
A. V. Rao,
D. A. Eschenbach,
M. L. F. Lee,
P. J. Rettig,
J. A. Regan,
K. L. Geromanos,
D. H. Martin,
J. G. Pastorek,
R. S. Gibbs, and K. A. Lipscomb.
1991.
Antepartum cultures for Ureaplasma urealyticum are not useful in predicting pregnancy outcome.
Am. J. Obstet. Gynecol.
164:728-733[Medline].
|
| 4.
|
Cassell, G. H.,
K. B. Waites,
D. T. Crouse,
P. T. Rudd,
K. C. Canupp,
S. Stagno, and G. R. Cutter.
1988.
Association of Ureaplasma urealyticum of the lower respiratory tract with chronic lung disease and death in very-low-birth-weight infants.
Lancet
ii:240-244.
|
| 5.
|
Cassell, G. H.,
K. B. Waites,
H. L. Watson,
D. T. Crouse, and R. Harasawa.
1993.
Ureaplasma urealyticum intrauterine infection: role in prematurity and disease in newborns.
Clin. Microbiol. Rev.
6:69-87[Abstract/Free Full Text].
|
| 6.
|
Cheng, X.,
A. Naessens, and S. Lauwers.
1993.
Identification and characterization of serotype 4-specific antigens of Ureaplasma urealyticum by use of monoclonal antibodies.
Infect. Immun.
61:2253-2256[Abstract/Free Full Text].
|
| 7.
|
Cheng, X.,
A. Naessens, and S. Lauwers.
1994.
Identification of serotype 1-, 3-, and 6-specific antigens of Ureaplasma urealyticum by using monoclonal antibodies.
J. Clin. Microbiol.
32:1060-1062[Abstract/Free Full Text].
|
| 8.
|
Christiansen, C.,
F. T. Black, and E. A. Freundt.
1981.
Hybridization experiments with deoxyribonucleic acid from Ureaplasma urealyticum serovars I to VIII.
Int. J. Syst. Bacteriol.
31:259-262[Abstract/Free Full Text].
|
| 9.
|
Cracea, E.,
D. Botez,
S. Constantinescu, and M. Georgescu-Braila.
1982.
Ureaplasma urealyticum serotypes isolated from cases of female sterility.
Zentbl. Bakteriol. Mikrobiol. Hyg. Abt 1 Orig. A
252:535-539.
|
| 10.
|
Garland, S. M., and L. J. Murton.
1987.
Neonatal meningitis caused by Ureaplasma urealyticum.
Pediatr. Infect. Dis. J.
6:868-870[Medline].
|
| 11.
|
Grattard, F.,
B. Pozzetto,
B. De Barbeyrac,
H. Renaudin,
M. Clerc,
O. G. Gaudin, and C. Bebear.
1995.
Arbitrarily-primed PCR confirms the differentiation of strains of Ureaplasma urealyticum into two biovars.
Mol. Cell. Probes
9:383-389[Medline].
|
| 12.
|
Grattard, F.,
B. Soleihac,
B. De Barbeyrac,
C. Bebear,
P. Seffert, and B. Pozzetto.
1995.
Epidemiologic and molecular investigations of genital mycoplasmas from women and neonates at delivery.
Pediatr. Infect. Dis. J.
14:853-858[Medline].
|
| 13.
|
Gray, D. J.,
H. B. Robinson,
J. Malone, and R. B. Thomson, Jr.
1992.
Adverse outcome in pregnancy following amniotic fluid isolation of Ureaplasma urealyticum.
Prenatal Diagn.
12:111-117[Medline].
|
| 14.
|
Harasawa, R.,
K. Dybvig,
H. L. Watson, and G. H. Cassell.
1991.
Two genomic clusters among the 14 serovars of Ureaplasma urealyticum.
Syst. Appl. Microbiol.
14:393-396.
|
| 15.
|
Harrison, H. R.
1983.
Prospective studies of Mycoplasma hominis infection in pregnancy.
Sex. Transm. Dis.
10:S311-S317.
|
| 16.
|
Knox, C. L.,
D. G. Cave,
D. J. Farrell,
H. T. Eastment, and P. Timms.
1997.
The role of Ureaplasma urealyticum in adverse pregnancy outcome.
Aust. N. Z. J. Obstet. Gynaecol.
37:45-51[Medline].
|
| 17.
| Knox, C. L., P. Giffard, and P. Timms. The
phylogeny of Ureaplasma urealyticum based on the
mba gene fragment. Int. J. Syst. Bacteriol., in press.
|
| 18.
|
Kong, F.,
X. Zhu,
J. Zhou, et al.
1996.
Grouping and typing of Ureaplasma urealyticum.
Natl. Med. J. China
76:138-141.
|
| 19.
|
Kundsin, R. B.,
S. G. Driscoll,
R. R. Monson,
C. Yeh,
S. A. Biano, and W. D. Cochran.
1984.
Association of Ureaplasma urealyticum in the placenta with perinatal morbidity and mortality.
N. Engl. J. Med.
310:941-945[Abstract].
|
| 20.
|
Maher, C. F.,
M. V. Haran,
D. J. Farrell, and D. G. Cave.
1994.
Ureaplasma urealyticum chorioamnionitis.
Aust. N. Z. J. Obstet. Gynaecol.
34:477-479[Medline].
|
| 21.
|
McGregor, J. A.,
J. I. French,
R. Richter,
M. Vuchetich,
V. Bachus,
K. Seo,
S. Hillier,
F. N. Judson,
J. McFee,
J. Schoonmaker, and J. K. Todd.
1990.
Cervicovaginal microflora and pregnancy outcome: results of a double-blind, placebo-controlled trial of erythromycin treatment.
Am. J. Obstet. Gynecol.
163:1580-1591[Medline].
|
| 22.
|
Naessens, A.,
W. Foulon,
J. Breynaert, and S. Lauwers.
1988.
Serotypes of Ureaplasma urealyticum isolated from normal pregnant women and patients with pregnancy complications.
J. Clin. Microbiol.
26:319-322[Abstract/Free Full Text].
|
| 23.
|
National Institutes of Health.
1991.
Pelvic inflammatory disease.
Sex. Transm. Dis.
18:46-64[Medline].
|
| 24.
|
Quinn, P. A., and L. U. Arshoff.
1986.
Serotypes of U. urealyticum found in fertile and infertile couples.
Pediatr. Infect. Dis. J.
5:S352. (Abstract.)
|
| 25.
|
Quinn, P. A.,
L. U. Arshoff, and H. C. S. Li.
1981.
Serotyping of Ureaplasma urealyticum by immunoperoxidase assay.
J. Clin. Microbiol.
13:670-676[Abstract/Free Full Text].
|
| 26.
|
Quinn, P. A.,
J. Butany,
J. Taylor, and W. Hannah.
1987.
Chorioamnionitis: its association with pregnancy outcome and microbial infection.
Am. J. Obstet. Gynecol.
156:379-387[Medline].
|
| 27.
|
Quinn, P. A.,
J. E. Gillan,
T. Markestad,
M. A. St. John,
A. Daneman,
K. I. Lie,
H. C. S. Li,
E. Czegledy-Nagy, and M. Klein.
1985.
Intrauterine infection with Ureaplasma urealyticum as a cause of fatal neonatal pneumonia.
Pediatr. Infect. Dis. J.
4:538-543.
|
| 28.
|
Quinn, P. A.,
A. B. Shewchuk,
J. Shuber,
K. I. Lie,
E. Ryan,
M. Sheu, and M. L. Chipman.
1983.
Serologic evidence of Ureaplasma urealyticum infection in women with spontaneous pregnancy loss.
Am. J. Obstet. Gynecol.
145:245-250[Medline].
|
| 29.
|
Robertson, J. A.,
L. A. Howard,
C. L. Zinner, and G. W. Stemke.
1994.
Comparison of 16S rRNA genes within the T960 and parvo biovars of ureaplasmas isolated from humans.
Int. J. Syst. Bacteriol.
44:836-838[Abstract/Free Full Text].
|
| 30.
|
Robertson, J. A., and G. W. Stemke.
1982.
Expanded serotyping scheme for Ureaplasma urealyticum strains isolated from humans.
J. Clin. Microbiol.
15:873-878[Abstract/Free Full Text].
|
| 31.
|
Robertson, J. A.,
A. Vekris,
C. Bebear, and G. W. Stemke.
1993.
Polymerase chain reaction using 16S rRNA gene sequences distinguishes the two biovars of Ureaplasma urealyticum.
J. Clin. Microbiol.
31:824-830[Abstract/Free Full Text].
|
| 32.
|
Sanchez, P. A., and J. A. Regan.
1987.
Vertical transmission of Ureaplasma urealyticum in full term infants.
Pediatr. Infect. Dis. J.
6:825-828[Medline].
|
| 33.
|
Shepard, M. C., and C. D. Lunceford.
1976.
Differential agar medium (A7) for identification of Ureaplasma urealyticum (human T mycoplasmas) in primary cultures of clinical material.
J. Clin. Microbiol.
3:613-625[Abstract/Free Full Text].
|
| 34.
|
Shepard, M. C., and C. L. Lunceford.
1978.
Serological typing of Ureaplasma urealyticum isolates from urethritis patients by an agar growth inhibition method.
J. Clin. Microbiol.
8:566-574[Abstract/Free Full Text].
|
| 35.
|
Teng, L.-J.,
X. Zheng,
J. I. Glass,
H. L. Watson,
J. Tsai, and G. H. Cassell.
1994.
Ureaplasma urealyticum biovar specificity and diversity are encoded in multiple-banded antigen gene.
J. Clin. Microbiol.
32:1464-1469[Abstract/Free Full Text].
|
| 36.
|
van Kuppeveld, F. J. M.,
J. T. M. van der Logt,
A. F. Angulo,
M. J. van Zoest,
W. G. V. Quint,
H. G. M. Niesters,
J. M. D. Galama, and W. J. G. Melchers.
1992.
Genus- and species-specific identification of mycoplasmas by 16S rRNA amplification.
Appl. Environ. Microbiol.
58:2606-2615[Abstract/Free Full Text].
|
| 37.
|
Waites, K. B.,
D. T. Crouse,
J. B. Philips,
K. C. Canupp, and G. H. Cassell.
1989.
Ureaplasmal pneumonia and sepsis associated with persistent pulmonary hypertension of the newborn.
Pediatrics
83:79-85[Abstract/Free Full Text].
|
| 38.
|
Waites, K. B.,
P. T. Rudd,
D. T. Crouse,
K. C. Canupp,
K. G. Nelson,
C. Ramsey, and G. H. Cassell.
1988.
Chronic Ureaplasma urealyticum and Mycoplasma hominis infections of the central nervous system in preterm infants.
Lancet
i:17-21.
|
| 39.
|
Zheng, X.,
L.-J. Teng,
H. L. Watson,
J. I. Glass,
A. Blanchard, and G. H. Cassell.
1995.
Small repeating units within the Ureaplasma urealyticum MB antigen gene encode serovar specificity and are associated with antigen size variation.
Infect. Immun.
63:891-898[Abstract].
|
| 40.
|
Zheng, X.,
H. L. Watson,
K. B. Waites, and G. H. Cassell.
1992.
Serotype diversity and antigen variation among invasive isolates of Ureaplasma urealyticum from neonates.
Infect. Immun.
60:3472-3474[Abstract/Free Full Text].
|
Journal of Clinical Microbiology, October 1998, p. 3032-3039, Vol. 36, No. 10
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