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Journal of Clinical Microbiology, June 1998, p. 1674-1678, Vol. 36, No. 6
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
CDC Group O-3: Phenotypic Characteristics, Fatty
Acid Composition, Isoprenoid Quinone Content, and In Vitro Antimicrobic
Susceptibilities of an Unusual Gram-Negative Bacterium Isolated from
Clinical Specimens
M. I.
Daneshvar,1,*
B.
Hill,2
D. G.
Hollis,1
C. W.
Moss,1
J. G.
Jordan,1
J. P.
Macgregor,1
F.
Tenover,2 and
R.
S.
Weyant1
Division of Bacterial and Mycotic
Diseases1 and
Hospital Infections
Program,2 National Center for Infectious
Diseases, Centers for Disease Control and Prevention, Public Health
Service, U.S. Department of Health and Human Services, Atlanta,
Georgia 30333
Received 17 November 1997/Returned for modification 22 December
1997/Accepted 17 March 1998
 |
ABSTRACT |
Between 1983 and 1994, 13 phenotypically similar unidentified
clinical isolates were received by the Special Bacteriology Reference
Laboratory, Centers for Disease Control and Prevention (CDC). Sources
included blood (four strains), lung (three strains), knee fluid and
duodenal tissue (one strain each), bone, and lymph node tissue (two
strains each). All were aerobic glucose-oxidizing, slender, long,
curved gram-negative rods that utilized xylose, sucrose, and maltose;
did not grow on MacConkey agar in 1 to 2 days; were oxidase positive;
hydrolyzed esculin; and grew on Campylobacter selective
medium. All were negative for urease, indole, nitrate reduction, and
gelatin hydrolysis. All were motile by means of a single polar
flagellum with a noticeably short wavelength; however, motility was
sometimes difficult to demonstrate. The cellular fatty acid
compositions of these strains, as analyzed by gas-liquid chromatography, were unique, characterized by relatively large amounts
of 16:1
7c, 16:0, and 18:1
7c with smaller amounts of 12:0,
3-OH-12:1, 14:0, 15:0, 18:0, Br-19:1, and 19:0cyc11-12.
High-performance liquid chromatography and mass spectrometry of the
quinone extracts of three representative strains showed ubiquinone-10
as the major component. Based on the breakpoints for the family
Enterobacteriaceae, all the strains were susceptible in
vitro to aminoglycosides, sulfamethoxazole-trimethoprim, and chloramphenicol but were resistant to most beta-lactams except imipenem. The MICs of amoxicillin-clavulanate and ciprofloxacin for
these strains clustered around the breakpoints, which makes it
difficult to predict the strains' response in vivo to these agents.
This group has been designated CDC oxidizer group 3 (O-3).
 |
INTRODUCTION |
In recent years the evolution of
human disease, in conjunction with the continuing improvement in
detection and identification of bacterial pathogens, has yielded
numerous previously unrecognized agents. Some of these agents include
new Bartonella and Bordetella species; the new
genera Afipia, Roseomonas, and
Balneatrix; and other currently unclassified isolates
(1-3, 8, 11-17). In 1983, the Special Bacteriology
Reference Laboratory of the Centers for Disease Control and Prevention
(CDC) received the first of 13 clinical isolates of unusual
gram-negative, glucose-oxidizing bacilli that shared a unique
phenotypic and cellular fatty acid (CFA) profile. These isolates were
from male and female patients and from a variety of sources, including
blood, bone, knee fluid, pulmonary, and duodenal and lymph node
tissues.
Presented herein is a polyphasic study of this group, to which the
provisional name CDC oxidizer group 3 (O-3) has been assigned. Included
within this study are morphologic, biochemical, CFA, isoprenoid
quinone, and in vitro antimicrobial susceptibility determinations.
 |
MATERIALS AND METHODS |
Bacterial strains.
The O-3 isolates studied, along with
their sources, geographic origins, and submission dates, are presented
in Table 1. All strains were stored as
suspensions in defibrinated rabbit blood in liquid nitrogen. Unless
otherwise indicated, the strains were cultured on heart infusion agar
supplemented with 5% rabbit blood (RBA) (BBL prepared media; BBL
Microbiology Systems, Cockeysville, Md.) and incubated at 35°C in a
candle jar.
Phenotypic tests.
Biochemical testing was done by the
methods of the CDC Special Bacteriology Reference Laboratory
(17). The flagellum staining was performed by the Ryu stain
method of Kodaka et al. (5), using a commercially available
reagent (Carr-Scarborough Microbiologicals, Decatur, Ga.). With the
exception of those for oxidase, catalase, growth temperature, and
gelatin digestion, all biochemical tests were performed at 35°C in an
aerobic incubator. The oxidase, catalase, and growth temperature tests
were determined at 1 day and gelatin digestion was determined at 7 and
14 days of incubation. Five isolates were tested for growth on
Trypticase soy agar with 5% sheep blood (BBL). Twelve isolates were
tested for growth on Campy selective CVA media (BBL) at 35°C in an
atmosphere of 5% hydrogen, 10% CO2, and 85% nitrogen.
The growth of these isolates was compared to their growth on RBA at
35°C in a candle jar atmosphere.
CFA analysis.
Cells were saponified, and the liberated fatty
acids were methylated and analyzed by capillary gas-liquid
chromatography (GLC) (17). The amide-linked hydroxy acids
that were not totally released by this saponification procedure were
completely released by a subsequent acid hydrolysis of the methanolic
aqueous layer after the methylation step (17). The
identification of fatty acids and the determination of double bond
positions in monounsaturated acids were accomplished by GLC and
GLC-mass spectrometry (GLC-MS). The confirmation of hydroxy acids was
accomplished by both acetylation and GLC-MS analysis, as described
previously (17). Isoprenoid quinones were extracted from 100 mg of lyophilized cells and were analyzed by reverse-phase
high-performance liquid chromatography and MS (6, 7).
In vitro antimicrobial susceptibility tests.
Antimicrobial
susceptibility profiles were determined by the broth microdilution
method described by the National Committee for Clinical Laboratory
Standards (NCCLS) (9), except that results were read after a
24-h incubation. The strains were streaked onto Trypticase soy agar
with 5% sheep blood (BBL) and incubated for 18 to 24 h at 35°C
in ambient air. Growth was taken from the plate with a sterile
cotton-tipped swab and suspended in a tube of unsupplemented
cation-adjusted Mueller-Hinton broth (Difco, Detroit, Mich.) to a
density equivalent to a McFarland standard of 1.0. Eight-milliliter
aliquots of the broth suspensions were added to 32 ml of sterile
distilled water and inoculated into MIC plates with the MIC 2000 (Dynatech Laboratories, Chantilly, Va.). Microtiter MIC plates were
prepared at the CDC according to the recommendations of the NCCLS
(9) (final volume per well, 100 µl). The plates were
incubated in ambient air for 24 h at 35°C, with a final inoculum
concentration of approximately 5 × 105 CFU/ml. The
following organisms were used as controls: Escherichia coli
ATCC 25922, E. coli ATCC 35218, Pseudomonas
aeruginosa ATCC 27853, and Enterococcus faecalis ATCC
29212.
 |
RESULTS |
As indicated in Table 1, all O-3 strains were received from
laboratories within the United States. The first was received in 1983, and most of the others were received after 1991. Isolates were obtained
from a variety of sources, including blood, respiratory, bone, joint,
and lymphatic tissues. Patients from whom these isolates were obtained
ranged in age from 1 to 92 years, and no significant preference for
either gender was noted. Clinical information was available on five
patients, and no common underlying syndrome was identified.
The phenotypic characteristics of the O-3 strains in this study are
presented in Table 2. Cells grown on
heart infusion agar at 35°C for 18 to 24 h were thin, medium to
slightly long curved rods with tapered ends (sickle-like) that
sometimes formed rosettes (Fig. 1). All
the strains grew slightly to moderately well on RBA that was incubated
either aerobically or in a candle jar atmosphere for 18 to 24 h.
Isolated colonies were circular, entire, translucent, and very
punctate. Frequently, no hemolytic reaction was observed on RBA after
overnight incubation at 35°C; however, five strains produced a faint
green discoloration. Five strains were also tested for growth on
Trypticase soy agar supplemented with 5% sheep blood, and all grew at
rates and with morphologies similar to those obtained on RBA. All 13 strains were aerobic glucose oxidizers. All the strains produced acid
from D-xylose, sucrose, and maltose; were oxidase positive;
and hydrolyzed esculin. When examined at 2 days of incubation, all the
strains were negative for growth on MacConkey agar; however, growth was
detected at 3 to 7 days for five strains. All were negative for urease,
indole, nitrate reduction, and gelatin hydrolysis. Four strains reduced
0.01% nitrite without gas formation. All the strains were motile by
means of a single polar flagellum with a noticeably short wavelength
(Fig. 2); however, motility was sometimes
difficult to demonstrate.

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FIG. 1.
CDC group O-3 strain G8822 with Gram stain, grown in
heart infusion agar at 35°C for 24 h. Magnification, ×3,000.
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FIG. 2.
CDC group O-3 strain G8822 with flagellum stain, grown
in tryptone glucose yeast extract medium at 25°C for 24 h.
Magnification, ×3,000.
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Table 2 also contains phenotypic results for four similar
glucose-oxidizing gram-negative species and CDC groups. The
"Agrobacterium yellow group" was first described in
1985, and CDC groups O-1 and O-2 were first described in 1996 (12,
17). The strains designated Sphingomonas species
represent isolates that phenotypically resemble Sphingomonas
paucimobilis and Sphingomonas parapaucimobilis (17). O-3 is the only group in which a yellow growth pigment is not produced and the only group of predominately curved rods. Other
tests useful in differentiating these taxa include those for oxidation
of D-xylose, lactose, sucrose, and maltose; Christensen's urea hydrolysis; and 3-ketolactonate production.
To determine the growth ability of the O-3 group on
Campylobacter selective medium, 12 isolates were tested for
growth on Campy CVA. The results were then compared to their growth on
RBA. All the isolates grew as well or, in most cases, better on the Campy CVA plates under microaerophilic conditions.
The CFA composition of the O-3 group is presented in Table
3. All 13 strains shared a unique profile
characterized by relatively large amounts of 16:1
7c (8 to 22%),
16:0 (15 to 32%), and 18:1
7c (32 to 50%) with smaller amounts (1 to 10%) of 12:0, 3-OH-12:1, 14:0, 15:0, 18:0, Br-19:1, and
19:0cyc11-12. In addition, 0 to 2% amounts of 3-OH-12:0,
i-15:0, 2-OH-14:0, i-17:0, 17:1
8c, 17:1
6c, 17:0, 18:2, 18:1
9c,
and 20:4 were observed in the CFA profile of the O-3 group. Upon acid
hydrolysis of two representative strains, additional 1% amounts each
of 3-OH-12:0 and 2-OH-14:0 were released, indicating that these acids
are both ester and amide linked. No additional hydroxy acids were
released upon acid hydrolysis. High-performance liquid chromatographic and MS data of the quinone extracts of three representative strains confirmed ubiquinone-10 (Q-10) as the major component, constituting approximately 90 to 100% of the total ubiquinone content. The quinone
content of the O-3 group is most similar to that of Afipia species in that Q-10 is essentially the only quinone present, as
studied by our methods (8). Therefore, the presence of Q-10, in combination with the described CFA profile, provides a rapid chemical identification of the O-3 isolates.
The results of antimicrobial susceptibility testing of all O-3 isolates
against 19 antimicrobial agents are shown in Table 4. Based on NCCLS interpretative
standards for the family Enterobacteriaceae (10),
all the isolates tested were susceptible to the aminoglycosides (amikacin, gentamicin, and tobramycin), trimethoprim-sulfamethozaxole, and imipenem. Twelve of the 13 isolates were susceptible to
chloramphenicol, with one isolate (G8743) yielding an intermediate MIC
of 16 µg/ml. All the isolates, with the exception of G185, were
resistant to most of the beta-lactams, including ampicillin, cefazolin,
cefoxitin, cefotaxime, ceftriaxone, cefotetan, ceftazidime, and
aztreonam, although clavulanic acid did appear to inhibit this
activity. Resistance to tetracycline was variable. The ciprofloxacin
and amoxicillin-clavulanate MICs clustered around the breakpoints, which makes the in vivo responses of these organisms to these antimicrobial agents difficult to predict.
 |
DISCUSSION |
CDC group O-3 represents 13 similar clinical isolates received by
the Special Bacteriology Reference Laboratory between 1983 and 1994. The patient information submitted with these isolates indicates that
this group may be isolated from males and females of all ages. Although
these isolates often were obtained from sites associated with invasive
disease (e.g., blood and lymph nodes), the limited amount of clinical
information received makes it difficult to estimate their clinical
significance. Additional studies are needed to better understand their
pathogenic potential.
The duodenal tissue isolate is particularly interesting in that it was
obtained from a patient with a diagnosis of duodenal ulcer and was
submitted to CDC as a Campylobacter species. This suggests a
potential for misidentification of the O-3 organism as a member of the
genus Campylobacter in the clinical laboratory, especially
since it grows well in Campylobacter selective medium.
O-3 strains are characterized by distinctive biochemical and CFA
profiles, as well as cellular and flagellar morphology. However, the
O-3 biochemical profile shares some similarities with other unclassified groups, including CDC groups O-1 and O-2, and the Agrobacterium yellow group (12, 17). Tests useful
in differentiating among these groups include those for cellular
morphology; oxidation of lactose, D-xylose, sucrose, and
maltose; urea hydrolysis; 3-ketolactonate production; flagellar
morphology; and presence of a yellow growth pigment. CFA analysis is
also useful in differentiating the three CDC oxidizer groups and
Sphingomonas. The utility of CFA analysis in identifying
Agrobacterium yellow group strains will be better understood
when more strains become available.
The antimicrobial susceptibility profiles of these isolates show a high
level of in vitro resistance to many of the commonly used broad
spectrum agents, including most of the beta-lactam drugs. The results
for ciprofloxacin cluster around the breakpoint. In light of these
findings, the clinical significance of O-3 isolates should be carefully
assessed in determining appropriate antimicrobial therapy. At this time
there is very little information available on the natural pathogenicity
of these organisms.
The ultimate taxonomic classification of the O-3 group will require the
use of molecular techniques, such as 16S rRNA sequencing and DNA-DNA
hybridization analysis. At this time, we do not know whether the O-3
group represents one or more species. Some Special Bacteriology
Reference Laboratory groups, such as DF-2 (now Capnocytophaga canimorsus) (2) and NO-2 (now Bordetella
holmesii) (15), have been shown to be genetically
homogeneous, whereas other groups, such as WO-1 and Pink Coccoid I
through IV, have represented multiple species (4, 11, 14).
We plan to initiate molecular taxonomic studies of these strains in the
near future; however, the findings of this study should assist clinical
microbiologists in the identification of this group, which will
ultimately provide an increased understanding of its true clinical
significance.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Analytical
Chemistry Laboratory, Centers for Disease Control and Prevention,
Mailstop G06, Atlanta, GA 30333. Phone: (404) 639-3861. Fax: (404)
639-4421. E-mail: MID2{at}CDC.GOV.
 |
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Journal of Clinical Microbiology, June 1998, p. 1674-1678, Vol. 36, No. 6
0095-1137/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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