Journal of Clinical Microbiology, January 1999, p. 251-254, Vol. 37, No. 1
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Analysis of Legionella pneumophila
Serogroup 1 Isolates by Pulsed-Field Gel Electrophoresis
Thomas J.
Marrie,1,2,*
Shaun
Tyler,3
Gregory
Bezanson,2
Charles
Dendy,3 and
Wendy
Johnson3
Departments of
Medicine1 and
Microbiology,2 Dalhousie University and
Queen Elizabeth II Health Sciences Centre, and
Laboratory
Centre for Disease Control, Department of
Health,3 Ottawa, Ontario, Canada
Received 20 February 1998/Returned for modification 23 June
1998/Accepted 2 October 1998
 |
ABSTRACT |
At a hospital in Halifax, Nova Scotia, Canada, three
strains of Legionella pneumophila were detectable based on
plasmid content, while the isolates collected at another hospital in
Halifax had no plasmids. Genomic DNA was digested with
BssHII, SalI, and SpeI and
subjected to pulsed-field gel electrophoresis (PFGE). We found no
relationship between plasmid profile and PFGE pattern.
 |
TEXT |
Legionella pneumophila
serogroup 1 has been present for up to 10 years in the potable
water supply of five of six health care institutions in the city of
Halifax, Nova Scotia, Canada (1). Nosocomial Legionnaires'
disease (LD) has occurred primarily at two of these hospitals (1,
4). At hospital B, all of the isolates from both patients and
water samples have been L. pneumophila serogroup 1, which lacks plasmids (1). At hospital A, most of
the isolates have contained one of the following plasmids: a 23-MDa
plasmid (type II), 72- and 96-MDa plasmids (type III), and a
100-MDa plasmid (type VI). A few isolates had a 70-MDa plasmid (type IV), an 89-MDa plasmid (type V), and 58- and 103-MDa
plasmids (type VII) (5). The potable water at both of these
hospitals remained positive for Legionella from 1987 until the present for hospital A and until its demolition in 1996 for
hospital B (where plasmidless isolates were obtained).
Our objectives in this study were to determine if the genomic DNA of
the plasmidless isolates was identical to that of the plasmid-containing isolates, to determine the relatedness
of the Legionella population at each institution, and
to determine the genomic stability of isolates obtained by longitudinal
sampling from the potable water supply.
L. pneumophila serogroup 1 strains which had been isolated
and typed as previously described (5) were recovered from
storage. These isolates were selected from our culture collection so as to be representative of the isolates collected from 1987 to 1992. Thirty of the isolates examined were from hospital A
(plasmid-containing isolates), and 13 were from hospital B (plasmidless
isolates). In addition, five isolates obtained from patients with
community-acquired LD were examined to determine the degree of
relatedness of these strains to the hospital strains.
Portions of the cultures grown after a 48-h incubation of isolates on
buffered charcoal-yeast extract agar (BYCE) were suspended in 0.5 ml of
TE buffer (0.5 M Tris-HCl [pH 8.0], 0.02 M EDTA). After
pelleting and resuspension of the cells in 25 µl of TE buffer, plasmid DNA was extracted from the cells by a modified alkaline sodium
dodecyl sulfate procedure (5). The contents of the extracts were determined by electrophoresis with vertical 0.75% agarose gels
followed by ethidium bromide staining. Strains were classified as
having no detectable plasmids (plasmid type 0), a 23-MDa plasmid (plasmid type II), 96- and 72-MDa plasmids (type III), and a 100-MDa plasmid.
Growth from a single plate was used to prepare high-molecular-weight
DNA in agarose plugs for each strain (2). Agarose plugs were
digested overnight with BssHII, SalI, or
SpeI as recommended by the manufacturer (Boehringer
Mannheim, Laval, Quebec, Canada). Electrophoresis was performed
in 1% agarose gels for 12 h with a 5-s pulse and then for
12 h with a 10-s pulse with a contour-clamped homogeneous
electronic field system (CHEF-DRIII; Bio-Rad Laboratories, Mississauga, Ontario, Canada). Pulsed-field gels were run with 5-kb-incremental molecular size standards ranging in size from 4.9 to
120 kb (Bio-Rad Laboratories) in every fifth lane in order to
ensure accurate sizing of the bands. Gels were stained with ethidium
bromide and digitized under UV illumination. Restriction fragment
patterns were analyzed with Bio Image whole band analyzer software (Bio
Image, Ann Arbor, Mich.) running on a SPARC 10 workstation (SUN
Microsystems, Mountain View, Calif.). A dendrogram was
generated for each group of samples in an enzyme category by the
unweighted pair groups method with arithmetic mean. This method defines
the intercluster distance as the average of all the pairwise distances for members of the two clusters (7).
Thirty L. pneumophila serogroup 1 isolates recovered
over 6 years from patients and potable water at hospital A fell into four clusters, with a few unrelated isolates remaining, when digested with SalI (Fig. 1). DNA from
23 plasmid type II-carrying isolates fell into three clusters
consisting of 13, 4, and 4 isolates, with 2 single isolates remaining;
each cluster had a different pulsed-field gel electrophoresis
(PFGE) pattern (Fig. 1). Type II plasmid-containing strains
had PFGE patterns identical to those of isolates with type III and type
VI plasmids. An isolate with a type III plasmid profile recovered at
hospital A was 100% related to the plasmidless isolates at hospital B
(data not shown). Eleven of the 13 isolates from patients and potable
water at hospital B were identical when digested with all three
enzymes, and 12 of the 13 isolates produced identical profiles
following digestion with BssHII and SalI (Fig.
2). These isolates had been
collected over a period of 7 years. The results of digestion of five
isolates from patients with community-acquired LD are shown in Fig.
3. In contrast to the
isolates recovered at the two hospitals (Fig. 1 and 2), none of
the isolates are identical.

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FIG. 1.
PFGE patterns (after digestion with BssHII,
SalI, or SpeI) of 30 isolates of L. pneumophila serogroup 1 recovered from the potable water supply or
patients at hospital A during the period from 1987 to 1992. A
dendrogram for patterns obtained with each enzyme is shown. The
pedigree of each isolate is given. The designations to the left of
column 1 refer to the laboratory identification of each isolate. Column
1 lists the source of the isolate (W, water; P, patient), column 2 gives the year the isolate was obtained, column 3 gives the location
within the hospital (8NTU, 8 North Transplant Unit; SICU, surgical
intensive care unit; MICU, medical intensive care unit) from which the
isolate was recovered, and column 4 gives the plasmid type of each
isolate. The vertical lines to the right of column 4 represent the
digest pattern of each isolate, i.e., the PFGE pattern. The bar at the
bottom of each dendrogram indicates the degree of genetic relatedness
assessed by a distance matrix method.
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FIG. 2.
PFGE patterns (after digestion with BssHII,
SalI, or SpeI) of 13 isolates of L. pneumophila serogroup 1 recovered from the potable water supply or
patients at hospital B during the period from 1987 to 1992. A
dendrogram for patterns obtained with each enzyme is shown. The
pedigree of each isolate is shown. Column 1 gives the source of the
isolate (W, water; P, patient). Column 2 gives the year the isolate was
obtained.
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FIG. 3.
PFGE patterns (after digestion with BssHII,
SalI, or Spe1) of five isolates of L. pneumophila serogroup 1 obtained from patients with
community-acquired LD. A dendrogram for patterns obtained with each
enzyme is shown. The pedigree of each isolate as shown on the figure.
Column 1 lists the source of the isolate (P, patient). Column 2 gives
the year each isolate was recovered. Column 3 is the plasmid type (0, no plasmid). The bar at the bottom of the figure indicates the degree
of genetic relatedness.
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|
This study shows that the strains of L. pneumophila
recovered from the potable water of two Halifax hospitals have
been remarkably stable in terms of genomic DNA over a period of
several years. The plasmidless strains were more homogenous
than the plasmid-containing strains and indeed, 12 of the 13 were
identical despite isolation periods that spanned 7 years.
The plasmid-containing isolates from hospital A fell into two to
four clusters that were 86 to 96% related when digested with all three
enzymes. These clusters accounted for 27 of the 30 isolates examined.
When the 21 plasmid type II-carrying isolates were examined they
fell into three clusters of 10, 4, and 4 isolates and 3 single isolates
with different PFGE patterns (Fig. 1). Furthermore, type II
plasmid-carrying strains shared PFGE patterns with plasmid-containing isolates of type III, type II, and type VI. A type III
plasmid-containing isolate from hospital A was 100% identical to the
isolates with no plasmids from hospital B. This suggests that there is
no correlation between PFGE pattern and plasmid profile.
We previously purified type II plasmid, cut it with BssHII,
and found that two fragments (of 5 and 32.6 kb) were generated (3). The size limit for resolution under PFGE conditions is approximately 50 kb. Thus, for type II plasmid-containing
isolates only chromosomal DNA was examined. Purified
100-MDa plasmid (type VI) was digested with SalI, and
five fragments, of 43, 23, 15.5, 11.0, and 6.3 kb, were generated
(6). This plasmid was not cut with BssHII.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Medicine, Queen Elizabeth II Health Sciences Centre, VG Site, Room 5014 ACC, 1278 Tower Rd., Halifax, Nova Scotia B3H 2Y9 Canada. Phone: 902 473-5553. Fax: 902 473-7394. E-mail: tmarrie{at}is.dal.ca.
 |
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Diverse populations of Legionella pneumophila present in the water of geographically clustered institutions served by the same water reservoir.
J. Clin. Microbiol.
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Journal of Clinical Microbiology, January 1999, p. 251-254, Vol. 37, No. 1
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.