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Journal of Clinical Microbiology, November 1999, p. 3533-3539, Vol. 37, No. 11
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Rapid Identification of Candida
dubliniensis with Commercial Yeast Identification
Systems
D. H.
Pincus,1,*
D. C.
Coleman,2
W. R.
Pruitt,3
A. A.
Padhye,3
I. F.
Salkin,4
M.
Geimer,1
A.
Bassel,1
D. J.
Sullivan,2
M.
Clarke,2 and
V.
Hearn2
bioMérieux, Inc., Hazelwood,
Missouri1; Department of Oral Medicine
and Oral Pathology, School of Dental Science and Dublin Dental
Hospital, Trinity College, University of Dublin, Dublin 2, Republic of
Ireland2; Mycotic Diseases Branch,
Division of Bacterial and Mycotic Diseases, National Center for
Infectious Diseases, Centers for Disease Control and Prevention,
Atlanta, Georgia3; and Wadsworth Center
for Laboratories and Research, New York State Department of Health,
Albany, New York4
Received 16 April 1999/Returned for modification 12 July
1999/Accepted 2 August 1999
 |
ABSTRACT |
Candida dubliniensis is a newly described species that
is closely related phylogenetically to Candida albicans and
that is commonly associated with oral candidiasis in human
immunodeficiency virus-positive patients. Several recent studies have
attempted to elucidate phenotypic and genotypic characteristics of use
in separating the two species. However, results obtained with simple phenotypic tests were too variable and tests that provided more definitive data were too complex for routine use in the clinical laboratory setting. The objective of this study was to determine if
reproducible identification of C. dubliniensis could be
obtained with commercial identification kits. The substrate reactivity profiles of 80 C. dubliniensis isolates were obtained by
using the API 20C AUX, ID 32 C, RapID Yeast Plus, VITEK YBC, and VITEK 2 ID-YST systems. The percentages of C. dubliniensis
isolates capable of assimilating or hydrolyzing each substrate were
compared with the percentages from the C. albicans profiles
in each kit's database, and the results were expressed as percent
C. dubliniensis and percent C. albicans. Any
substrate that showed >50% difference in reactivity was considered
useful in differentiating the species. In addition, assimilation of
methyl-
-D-glucoside (MDG), D-trehalose (TRE), and D-xylose (XYL) by the same isolates was
investigated by the traditional procedure of Wickerham and Burton
(L. J. Wickerham and K. A. Burton, J. Bacteriol. 56:363-371,
1948). At 48 h (the time recommended by the manufacturer for its
new database), we found that the assimilation of four carbohydrates in
the API 20C AUX system could be used to distinguish the species, i.e.,
glycerol (GLY; 88 and 14%), XYL (0 and 88%), MDG (0 and 85%), and
TRE (15 and 97%). Similarly, results with the ID 32 C system at
48 h showed that XYL (0 and 98%), MDG (0 and 98%), lactate (LAT;
0 and 96%), and TRE (30 and 96%) could be used to separate the two
species. Phosphatase (PHS; 9 and 76%) and
-D-glucosidase (23 and 94%) proved to be the most
useful for separation of the species in the RapID Yeast Plus system.
While at 24 h the profiles obtained with the VITEK YBC system
showed that MDG (10 and 95%), XYL (0 and 95%), and GLY (26 and 80%)
could be used to separate the two species, at 48 h only XYL (6 and
95%) could be used to separate the two species. The most useful
substrates in the VITEK 2 ID-YST system were TRE (1 and 89%), MDG (1 and 99%), LAT (4 and 98%), and PHS (83 and 1%). While the latter kit
was not yet commercially available at the time of the study, it would
appear to be the most valuable for the identification of C. dubliniensis. Although assimilation of MDG, TRE, and XYL proved
to be the most useful for species differentiation by the majority of
commercial systems, the results with these carbohydrates by the
Wickerham and Burton procedure were essentially the same for both
species, albeit following protracted incubation. Thus, it is the
rapidity of the assimilation achieved with the commercial systems that
allows the differentiation of C. dubliniensis from C. albicans.
 |
INTRODUCTION |
Candida dubliniensis,
first described in 1995 by Sullivan et al. (27), has been
isolated from various geographic locations (24, 25), most
commonly from oral specimens from human immunodeficiency virus
(HIV)-infected and AIDS patients (5, 24). C. dubliniensis has been implicated as an agent of oral candidiasis
(5, 23) and can develop resistance to fluconazole (10,
16, 17, 19), a common antifungal drug used for the treatment of
mycoses in AIDS patients. The yeast has also been recovered from
vaginal, fecal, lung, sputum, and blood specimens from HIV-negative
individuals (15, 16, 18, 20). While only recently described,
one isolate (formerly misidentified as C. stellatoidea)
dates back to 1957, and another (formerly misidentified as C. albicans) dates back to 1952 (15, 24, 27).
Retrospective studies of two yeast stock collections showed that
approximately 2% of isolates originally identified as C. albicans were actually C. dubliniensis (5, 18). A similar investigation of a collection of oral yeast
isolates from HIV-infected individuals originally identified as
C. albicans revealed that 16.5% were C. dubliniensis (5).
C. dubliniensis is closely related phylogenetically to
C. albicans and the former species C. stellatoidea (5), now considered to be a synonym of
C. albicans (1, 11). Consequently,
phenotypically, C. dubliniensis and C. albicans
have many similarities, including their microscopic morphology and
ability to form germ tubes in serum. Since many laboratories use the
germ tube test (28) as their sole method for the
identification of C. albicans, isolates of C. dubliniensis have been overlooked and misidentified as the former
species (5, 18). In addition, both species typically produce
blastoconidia with pseudohyphae, true hyphae, and chlamydospores. Some
investigators have noted more abundant production and different arrangements (pairs, triplets, or clusters) of chlamydospores with
C. dubliniensis (8, 27), but this can be somewhat
subjective for clear separation of the two species (10).
The appearance of colonies on a chromogenic medium (i.e., CHROMagar
Candida) has been considered a useful tool for recognition of C. dubliniensis, which is reported to develop dark green colonies after incubation at 37°C for 48 h, in contrast to the light
green, light blue-green, or blue-green colonies seen with C. albicans (4, 5). However, the characteristic dark green
colony pigment of C. dubliniensis may be lost after
subculture or storage at
70°C, with colonies exhibiting the light
green appearance of C. albicans (22, 24). It
appears that incubation conditions are also important since colonies of
C. albicans can have the same appearance as C. dubliniensis when they are grown for an extended period on
CHROMagar Candida medium (18, 22). Although this method
seems to have a high degree of sensitivity, specificity was lacking in
some studies, suggesting that it should be used only as a screening
tool for primary isolation of yeasts from clinical specimens and allows
presumptive identification of C. dubliniensis in mixed
cultures since it is often present with C. albicans
(24).
Growth at 42°C was initially considered to be a useful test for
differentiation of C. dubliniensis (no growth) from C. albicans (growth) in the original description of this new species
(27). However, strains of C. dubliniensis which
exhibit either poor (4, 5, 23-25) or good growth (10,
20, 22) at 42°C have been reported. In other temperature
tolerance studies, 120 isolates of C. dubliniensis showed no
growth, while 98 of 99 C. albicans strains grew at 45°C
(20). However, in subsequent investigations only 18 of 28 C. albicans strains grew at 45°C (10).
Other phenotypic methods for the more definitive separation of C. dubliniensis from C. albicans have been described in
the literature. Bikandi et al. (2) described the development
of an immunofluorescence test based on the antibody detection of differential antigen expression on C. dubliniensis
blastospores and C. albicans germ tubes. Furthermore, an
intracellular
-glucosidase (
GLU) test was reported to indicate
clear delineation between isolates of C. albicans and a
cluster of "atypical C. albicans" (i.e., C. dubliniensis) isolates (3). A later study showed that
all strains of C. dubliniensis were negative, but 11 of 481 C. albicans strains also tested negative (18).
Although these methods provide other potential screening tests, they
seem inefficient for routine use in clinical laboratories.
Several reports of studies that have used molecular methods to
characterize the genetic difference between C. dubliniensis and C. albicans and their phylogenetic relationship (7,
26, 27) have appeared. These have included hybridization with
C. albicans-specific probe 27A or Ca3 and C. dubliniensis-specific probe Cd2 (3, 4, 9, 10, 13, 18, 22, 25,
27), multilocus enzyme electrophoresis (3),
oligonucleotide fingerprinting (4), electrophoretic
karyotype analysis (4, 8, 25, 27), random amplified
polymorphic DNA analysis (4, 25, 27), restriction fragment
length polymorphism analysis (10, 14, 25-27), and rRNA
sequencing analysis (4, 25-27). Data from those studies
support C. dubliniensis as a new taxon separate from
C. albicans and its synonym C. stellatoidea.
However, these methods are labor-intensive and expensive and require
special equipment, making them unsuitable for most clinical laboratories.
While several studies with C. dubliniensis have included
data from the substrate assimilation-based ID 32 C or API 20C AUX yeast
identification systems (3, 4, 8, 10, 13, 21, 22, 25, 27),
this new species was not included in their respective databases when
the studies were performed (before 1998). Thus, the biopatterns
resulted in inconclusive identifications (not corresponding to any taxa
included in the databases) or misidentifications (usually as C. albicans or C. sake).
Simple phenotypic tests are useful screening tools but are too variable
for definitive identification of C. dubliniensis. Genotypic
tests (i.e., molecular typing methods) provide definitive data and
clear-cut differentiation of species but are too complex for routine
use in the clinical laboratory setting. The present study was
undertaken to determine if C. dubliniensis could be identified reproducibly with commercial identification kits. We studied
the profiles of 80 C. dubliniensis isolates obtained with the API 20C AUX, ID 32 C, RapID Yeast Plus, VITEK YBC, and VITEK 2 ID-YST systems. The data obtained in this study support the use of
commonly used commercial systems for the rapid and precise recognition
of C. dubliniensis in the clinical setting.
 |
MATERIALS AND METHODS |
Test organisms.
The 80 isolates of C. dubliniensis used in this study were from the culture collection
of the Department of Oral Medicine and Oral Pathology, School of Dental
Science and Dublin Dental Hospital, Trinity College, University of
Dublin. All isolates were previously characterized by one or more of
the molecular methods mentioned above. Cultures were maintained at
80°C in Protect cryovials (Technical Service Consultants Ltd.,
Lancashire, United Kingdom) or at
70°C in Trypticase soy broth with
15% (vol/vol) glycerol until the time of use. Frozen stocks were
subcultured onto Sabouraud glucose agar (SGA; Oxoid, Poole, Dorset,
United Kingdom, or Remel, Inc., Lenexa, Kans.) and were incubated at 30°C for 24 to 48 h before a second subculture to SGA. Colonies from the second subculture were used for testing. Incubation conditions (30°C for 18 to 48 h) for secondary SGA subcultures were as
specified by the manufacturer for each of the respective commercial systems.
API 20C AUX system.
The API 20C AUX system
(bioMérieux, Marcy l'Etoile, France), a commercial kit for the
evaluation of the assimilation of 19 carbon sources, was used according
to the manufacturer's instructions. Since 48 to 72 h of
incubation is recommended, test strips were incubated for both times to
allow a comparative evaluation of the assimilation patterns. Numerical
profiles were constructed from the reaction patterns and were used to
obtain identification results with either the analytical profile index
or the identification software program.
ID 32 C system.
The ID 32 C system (bioMérieux) was
used according to the manufacturer's instructions. The kit allows the
evaluation of the assimilation of 29 carbon sources, growth in the
presence of actidione (cycloheximide), and an esculin test (not used in
the identification profile number). Test strips were incubated at
30°C for 48 h (24 to 48 h is recommended). Numerical
profiles were constructed from the reaction patterns and were used to
obtain identifications with the identification software program.
RapID Yeast Plus system.
The RapID Yeast Plus system (Remel,
Inc. [formerly Innovative Diagnostic Systems, Norcross, Ga.]) was
used according to the manufacturer's instructions. This system permits
investigation of the assimilation of five carbon sources and hydrolysis
of 13 enzymatic substrates. The test panels were incubated at 30°C
for 4 h. Numerical profiles were constructed from the reaction
patterns and were used to obtain identifications with the code compendium.
VITEK YBC system.
The VITEK YBC system (bioMérieux,
Inc., Hazelwood, Mo.) was used according to the manufacturer's
instructions. With this system, one may evaluate the assimilation of 23 carbon substrates, growth in the presence of cycloheximide, nitrate
assimilation, and urea hydrolysis. Cards were read automatically at
24 h and again at 48 h for those that required additional
incubation (flagged by the identification software). Numerical profiles
were constructed automatically from the reaction patterns, and
identifications were obtained with the instrument software.
VITEK 2 ID-YST system.
The VITEK 2 ID-YST system
(bioMérieux, Inc.) was used according to the manufacturer's
instructions. This new system uses fluorogenic substrates to indicate
the assimilation of 26 carbon substrates (adonitol, trehalose [TRE],
N-acetyl-D-glucosamine, cellobiose, dulcitol,
galactose, glucose, lactose,
-methyl-D-glucoside [MDG], maltose, mannitol, melibiose, melezitose, palatinose,
raffinose, rhamnose, sucrose, salicin, sorbose, sorbitol, citrate,
galacturonate, gluconate, lactate [LAT], mono-methyl ester succinate,
and succinate), growth in the presence of actidione, nitrate
assimilation, reactivity with 9 arylamidases (glycine, hydroxyproline,
lysyl-alanine,
-glutamic acid, glycyl-glycine, histidine,
isoleucine, proline, and valine), and reactivity with 10 other enzymes
(
-galactosidase,
-glucosidase [
GLU],
-mannosidase,
-galactosidase,
GLU,
-glucuronidase, N-acetyl-
-glucosaminidase,
-xylosidase, phosphatase
[PHS], and urease). A yeast suspension was made in 0.45% (wt/vol)
aqueous NaCl to achieve a turbidity equivalent to that of a no. 2 McFarland standard and was inoculated into the test card. The cards
were incubated at 35°C for 15 h, and the test cards were read
automatically at 15-min intervals. Biopatterns were constructed
automatically, and reaction patterns were used to obtain
identifications with the instrument software.
Wickerham and Burton procedure.
The conventional broth tube
method of Wickerham and Burton (29) was used to test
assimilation of methyl-
-D-glucoside,
D-trehalose, and D-xylose. A white card with
3-mm-wide ink lines was used to obtain turbidity measurements. Tubes
were held against the card, and turbidity was considered 1+ if the
lines were clear but indistinct, 2+ if the lines were diffused, and 3+
if the lines were obliterated. Assimilation and negative control tubes
were inoculated with 100 µl of a dilute (1+ turbidity) yeast
suspension in water, incubated at 30°C for 28 days, and read weekly
for turbidity. Assimilation tubes were compared to negative control
tubes for each isolate and were recorded as positive if 2+ or 3+
turbidity was observed. A 1+ turbidity reaction was considered very
weak if the negative control tube was clear.
Nomenclature.
The API 20C AUX and ID 32 C system databases
list two biotypes of C. albicans (C. albicans 1 and C. albicans 2). C. albicans 1 represents the
sucrose-positive isolates of C. albicans that are
phenotypically similar to C. dubliniensis, whereas C. albicans 2 represents the sucrose-negative isolates formerly known
as C. stellatoidea. One should note that these biotypes have
been artificially created by the vendor for its databases and do not
reflect actual taxonomic designations. For more information, the reader
is referred to the work of Kwon-Chung et al. (12).
 |
RESULTS |
API 20C AUX system.
High separation values were found with
four carbohydrates in the API 20C AUX system (Table
1). Following 48 h (recommended for
most yeast species) and 72 h of incubation, none of the 80 C. dubliniensis isolates tested were found to assimilate
xylose (XYL) or MDG, whereas the database percentages for C. albicans 1 for these substrates are 88 and 85%, respectively.
Positive assimilation of TRE was seen with 15% of the C. dubliniensis isolates after 48 h of incubation, but 99% were
positive after 72 h of incubation. In contrast, the database
indicates that 97% of C. albicans 1 can assimilate TRE
after 48 h. Positive glycerol (GLY) assimilation was seen with
88% of the C. dubliniensis strains after 48 h of
incubation, while all but two strains (98%) were positive after
72 h of incubation. However, the GLY assimilation results for
C. albicans 1 in the database indicate that only 14% can
assimilate this substrate. The numerical profiles constructed from
C. dubliniensis reaction patterns after 48 and 72 h of
incubation are shown in Table 2.
Identification to the species level could be achieved after 48 h
of incubation for 74% of the isolates, and an additional 11% were
identified accurately to the genus level (low level of discrimination
of C. dubliniensis and C. albicans 1).
Misidentification of 11% of the C. dubliniensis isolates as C. albicans 1 was found, and 4% were unidentified. After
72 h of incubation, 95% of the 80 C. dubliniensis
isolates were misidentified as C. albicans 1, 4% were
unidentified, and 1% gave a correct identification of C. dubliniensis.
ID 32 C system.
High separation values were again found with
four carbohydrates in the ID 32 C system (Table
3). After 48 h of incubation, none
of the 80 isolates of C. dubliniensis tested with this
system assimilated LAT, MDG, or XYL, whereas the database percentages for these substrates with C. albicans 1 are 96, 98, and
98%, respectively. Thirty percent of the C. dubliniensis
strains assimilated TRE, whereas 97% of C. albicans 1 isolates assimilated TRE, as indicated in the database. Identification
was correct to the species level for 70% of the 80 strains tested
(Table 4). The remaining isolates (30%)
were unidentified, giving a doubtful profile result. The only
difference between these profiles and the ones that gave very good
identification to the species level was an additional positive reaction
for TRE assimilation. The current database percentage for TRE
assimilation is 0% for C. dubliniensis.
RapID Yeast Plus system.
The results obtained with the RapID
Yeast Plus system showed that two tests had the potential to separate
C. albicans and C. dubliniensis. After 4 h
of incubation, results for
GLU and PHS with C. dubliniensis strains were 23 and 9%, respectively, whereas the
database percentages for C. albicans are 94 and 76%, respectively. This product's database does not include data for C. dubliniensis, so correct identification was not possible.
Thirty-two different profiles were associated with testing of the 80 C. dubliniensis isolates (Table
5). Test results indicated that 5% of
the isolates had three profiles that gave a misidentification as
C. zeylanoides and 4% of the isolates had one profile that
gave a misidentification as C. stellatoidea. Eight profiles
that gave no identification (not found in the code compendium) were
seen for 10% of isolates tested, and the remaining isolates (81%) had
20 different profiles that gave a misidentification as C. albicans.
VITEK YBC system.
Results with the VITEK YBC system indicated
that three test substrates (Table 6) had
high separation values after 24 h of incubation. Results for MDG,
XYL, and GLY assimilation were 10, 0, and 26%, respectively, for
C. dubliniensis strains, whereas they are 95, 95, and 80%,
respectively, for C. albicans. For 47 of 80 isolates tested,
reincubation was required since C. dubliniensis (the
database does not include data for this species) was recognized by the
database as being the closest match to an underreactive strain of
C. albicans. For the 47 isolates reincubated, the result for
MDG assimilation was 64%, that for GLY assimilation was 51%, and that
for XYL assimilation was 6%. This reincubation (to 48 h) resulted
in increased positivity for tests that had the highest separation
values when the results were more negative after 24 h of
incubation. Thus, separation values for MDG and GLY assimilation decreased significantly, while XYL assimilation retained its high separation value. The bionumbers constructed from the C. dubliniensis reaction patterns after 24 and 48 h of
incubation are shown in Table 7 along
with the identification results. The majority of C. dubliniensis isolates (59%) were unidentified at 24 h. After 48 h of incubation, 99% were misidentified as C. albicans and 1% remained unidentified.
VITEK 2 ID-YST system.
Four substrates were found to have high
separation values in the VITEK 2 ID-YST system (Table
8). After 15 h of incubation, the
results for TRE, MDG, LAT, and PHS assimilation were 1, 1, 4, and 83%,
respectively, whereas database percentages for C. albicans
are 89, 99, 98, and 1%, respectively. Our tests showed percentages in
line with those in the database except for PHS. The current database
percentage of positivity for PHS for C. dubliniensis is 1%,
but we found a higher level of positivity (83%). Correct identification to the species level was highest (98%) with the VITEK 2 ID-YST system compared to those for the other two products (API 20C AUX
and ID 32 C) that include data for C. dubliniensis in their
databases. The identification algorithm used for the VITEK 2 ID-YST
system does not allow bionumber (numerical profile) construction since
occasional questionable test results can arise from data in uncertainty
zones near test thresholds. These questionable results were not
included in the totals used to calculate percentages. Identification
results are shown in Table 9.
Identification was correct to the species level for 98% of the 80 isolates tested, with 1% of the isolates unidentified and 1% of the
isolates misidentified.
Wickerham and Burton procedure.
Table
10 shows the results of conventional
tests for assimilation of MDG, TRE, and XYL that were eventually
positive for all 80 isolates of C. dubliniensis over the
extended incubation period. Assimilation of MDG was slow for 16 isolates (20%) and was delayed for 7 isolates (9%), while TRE
assimilation was slow for 10 isolates (12%). The most remarkable
differences were seen with XYL assimilation, which was slow for 8 isolates (10%) and delayed for all but 9 isolates (11%), requiring 3 weeks of incubation for 63 isolates (79%) and 4 weeks of incubation
for 6 isolates (8%). The remaining two isolates (2%) had very weak
positive reactions even after the incubation period was prolonged to 31 days.
 |
DISCUSSION |
Comparative growth at 42 to 45°C for the differentiation of
C. albicans and C. dubliniensis has been shown to
yield equivocal results and should be used only to obtain presumptive
evidence for the identification of C. dubliniensis. Most
incubators are controlled within 4°C, and this may explain the
differences in the results of studies cited above. Another potential
source for these differences is variation in the components of the
growth media.
Features such as abundant chlamydospore production, a dark green colony
pigment on CHROMagar Candida medium, and the absence of intracellular
GLU may be affected by phenotypic variation that can occur after
subculture or long-term storage and are probably useful only for
primary isolation (24). Since variability has been reported
in the literature, the results obtained by these tests should be
considered presumptive for C. dubliniensis and one or more
confirmatory test methods should be used to obtain a definitive
identification of this yeast.
Molecular methods are definitive but time-consuming and expensive and
require special equipment not often available in many clinical
laboratories. Our objective in this investigation was to determine if
five commercially available yeast identification systems could be used
to rapidly and accurately identify C. dubliniensis isolates
recovered from clinical specimens.
C. dubliniensis is a recent addition to the API 20C AUX
system database, and our results show that this system has the
potential to be a means of identification of this yeast. Our data
indicate that database modifications are suggested to avoid
misidentification of C. dubliniensis as C. albicans 1 or no identification. The largest discrepancy that we
observed was the positive TRE assimilation found for 15% of the
C. dubliniensis isolates tested. It is reasonable to assume
that incorporation of this variability in a future database would
correctly identify all isolates that were misidentified or unidentified
due to positive TRE reactions. According to the database, xylitol,
N-acetyl-D-glucosamine, and sucrose should have
had differential values, but our results after 48 h of incubation indicated similar percentages of assimilation (data not shown) for
C. dubliniensis (98, 91, and 100%, respectively) and the
expected reactions for C. albicans 1 (90, 99, and 97%, respectively).
Our data indicate that XYL assimilation was the most effective test in
separating the two species. We also examined 100 isolates of C. albicans 1 with API 20C AUX kits (data not shown), and all but 4 (96%) were positive for XYL assimilation. Of the four isolates that
were negative for XYL assimilation, three gave profiles characteristic of C. dubliniensis. Molecular analysis of these three
strains with C. dubliniensis-specific PCR primers
complementary to ACT1-associated intron sequences
(6) showed that two of the isolates were actually C. dubliniensis (data not shown). This is consistent with the frequency (>2%) observed in a retrospective study (18) of
a stock collection of C. albicans isolates. Our data that
showed 98% positivity for XYL assimilation for the 98 C. albicans isolates suggest that more than 88% (the API 20C AUX kit
database percentage) of C. albicans 1 strains can assimilate
XYL. It would seem worthwhile for the manufacturer to use molecular
methods to reexamine the XYL-negative isolates of C. albicans 1 whose data were included in the database. A higher
percentage of XYL positivity for C. albicans 1 would provide
more definitive separation of C. albicans from C. dubliniensis and allow the option of 72 h of incubation.
Data obtained with the ID 32 C system showed that TRE, MDG, and XYL
assimilations were very useful in differentiating the two species. As
noted with the API 20C AUX system, none of the C. dubliniensis isolates assimilated MDG or XYL, whereas 98% of the
C. albicans 1 isolates whose data were included in the ID 32C database assimilated MDG and XYL. LAT assimilation (0% for C. dubliniensis and 96% for C. albicans) is
another powerful substrate for the separation of these two species.
Although 70% of isolates tested could be identified to the species
level, the remaining isolates were unidentified due to a positive TRE
reaction. We found that 30% of isolates assimilated TRE, in contrast
to the expected 0% for C. dubliniensis in the database. It
is clear that a modification to the TRE assimilation percentage for
C. dubliniensis would result in a 100% correct
identification to the species level. According to the database,
palatinose assimilation should have had value in differentiating the
two species, but our testing indicated similar percentages (data not
shown) between C. dubliniensis (91%) and the expected
percentage (100%) for C. albicans 1.
The RapID Yeast Plus system showed two tests (PHS and
GLU) with
separation value, but a higher degree of variability was associated
with them compared to useful tests from the other systems. Since 32 different profiles were observed for this 18-test system with 80 isolates of C. dubliniensis, it appears that the substrates used by the RapID Yeast Plus system are less useful for C. dubliniensis than tests present in the other two manual systems.
It is difficult to predict the potential of database adjustments for
inclusion of data for C. dubliniensis, but it seems likely
that most strains of C. dubliniensis would not be identified
to the species level. Of the most useful tests observed with the other
commercial systems, only TRE assimilation and PHS tests are included in
the RapID Yeast Plus system. Reactivity with TRE was nearly identical
(data not shown) between C. dubliniensis (13%) and the
expected percentage (14%) for C. albicans. While PHS showed
some separation value, the difference between C. dubliniensis and C. albicans (9 and 76%, respectively)
was not as remarkable as the differences seen with MDG and XYL
assimilation present in all systems or LAT assimilation present in the
ID 32 C and VITEK 2 ID-YST systems. While there is no single test in
the RapID Yeast Plus system that clearly separates C. dubliniensis and C. albicans, a combination of test results, particularly negative PHS and
GLU results, may be useful for the identification of some strains of C. dubliniensis.
Assimilation of MDG, XYL, and GLY in the VITEK YBC system was found to
be useful for the separation of C. dubliniensis from C. albicans after 24 h of incubation. As with the API
20C AUX and ID 32 C systems, the MDG and XYL substrates were
significantly valuable, along with the GLY substrate in the API 20C AUX
kit. Although differentiation with TRE was noted with the API 20C AUX and ID 32 C systems (Tables 1 and 3), it did not meet our criterion of
a 50% difference with the VITEK YBC system. However, a lesser degree
of separation (54% with C. dubliniensis compared to 90% with C. albicans; data not shown) was noted with this
substrate, and TRE assimilation could have some utility if it were
considered in combination with the other tests mentioned above. Since
C. dubliniensis is not a taxon included in the VITEK YBC
system database, a high percentage (59%) of the C. dubliniensis strains tested required reincubation. The YBC
database recognized these isolates of C. dubliniensis as
most closely resembling underreactive isolates of C. albicans. The normal occurrence of underreactive isolates of
C. albicans that require reincubation is about 10%
(unpublished data for isolates in the database). Since about 90% of
C. albicans isolates are identified after 24 h of
incubation and 0% of C. dubliniensis assimilate XYL after
24 h of incubation, it is likely that at least 90% of C. dubliniensis isolates would be accurately identified to the
species level after 24 h of incubation if data for this new
species were included in the VITEK YBC system database.
The most encouraging results were seen with the VITEK 2 ID-YST system,
which was not yet commercially available at the time of our study. This
product is being introduced and has the best potential of the systems
included in the study for correct identification of C. dubliniensis to the species level. The database already includes
this taxon, and although our data showed much higher reactivity for
PHS, this had no impact on the final identifications. As with TRE
assimilation in the API 20C AUX and ID 32 C systems, this difference in
PHS reactivity seems attributable to the larger data set used in our
study. Since numerical profiles are not generated with this system, it
was not feasible to determine how uniform reaction patterns were for
the 80 isolates tested.
The most consistent test results were found with the ID 32 C system.
Even though this system incorporates 30 tests, only four different
profile numbers were seen at 48 h with the 80 isolates of C. dubliniensis that were tested. It is possible that incubation for
24 h would have resulted in more profile variation, as was the
case when we compared data from the API 20C AUX kit after 48 and
72 h of incubation. Even considering this difference related to
incubation time, the profile number variability was much less than that
observed with the RapID Yeast Plus or the VITEK YBC system.
As mentioned above, our results indicate that database modifications
are suggested for TRE assimilation with the API 20C AUX and ID 32 C
systems to allow correct identification of 15 and 30%, respectively,
of the C. dubliniensis isolates that gave either misidentification or no identification results. Our data indicate that
the RapID Yeast Plus system may not have the optimal substrates present
for differentiation of C. dubliniensis, but it has potential to identify C. dubliniensis to the genus level (but requires
additional confirmatory testing for definitive separation from C. albicans). It appears that incorporation of our data into the
VITEK YBC system database could allow accurate recognition of C. dubliniensis. It is clear that current users of these four
products should be aware of the bionumbers (profile numbers) shown in
Tables 2, 4, 5, and 7 so that this important species can be recognized rapidly in today's clinical laboratory setting.
 |
ACKNOWLEDGMENT |
Work performed in the laboratory of D. C. Coleman was
supported by Irish Health Research Board grants 41/96 and 05/97.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Dept. 015-B1/L3,
bioMérieux, Inc., 595 Anglum Rd., Hazelwood, MO 63042-2320. Phone: (314) 731-7456. Fax: (314) 731-7454. E-mail:
dave_pincus{at}na.biomerieux.com.
 |
REFERENCES |
| 1.
|
Barnett, J. A.,
R. W. Payne, and D. Yarrow.
1990.
Yeasts: characteristics and identification, 2nd ed.
Cambridge University Press, Cambridge, United Kingdom
|
| 2.
|
Bikandi, J.,
R. San Millán,
M. D. Moragues,
G. Cebas,
M. Clarke,
D. C. Coleman,
D. J. Sullivan,
G. Quindós, and J. Pontón.
1998.
Rapid identification of Candida dubliniensis by indirect immunofluorescence based on differential localization of antigens on C. dubliniensis blastospores and Candida albicans germ tubes.
J. Clin. Microbiol.
36:2428-2433[Abstract/Free Full Text].
|
| 3.
|
Boerlin, P.,
F. Boerlin-Petzold,
C. Durussel,
M. Addo,
J.-L. Pagani,
J.-P. Chave, and J. Bille.
1995.
Cluster of oral atypical Candida albicans isolates in a group of human immunodeficiency virus-positive drug users.
J. Clin. Microbiol.
33:1129-1135[Abstract].
|
| 4.
|
Coleman, D.,
D. Sullivan,
B. Harrington,
K. Haynes,
M. Henman,
D. Shanley,
D. Bennett,
G. Moran,
C. McCreary, and L. O'Neill.
1997.
Molecular and phenotypic analysis of Candida dubliniensis: a recently identified species linked with oral candidosis in HIV-infected and AIDS patients.
Oral Dis.
3(Suppl. 1):S96-S101.
|
| 5.
|
Coleman, D. C.,
D. J. Sullivan,
D. E. Bennett,
G. P. Moran,
H. J. Barry, and D. B. Shanley.
1997.
Candidiasis: the emergence of a novel species, Candida dubliniensis.
AIDS
11:557-567[Medline].
|
| 6.
|
Donnelly, S. M.,
D. J. Sullivan,
D. B. Shanley, and D. C. Coleman.
1999.
Phylogenetic analysis and rapid identification of Candida dubliniensis based on analysis of ACT1 intron and exon sequences.
Microbiology
145:1871-1882[Abstract].
|
| 7.
|
Gilfillan, G. D.,
D. J. Sullivan,
K. Haynes,
T. Parkinson,
D. C. Coleman, and N. A. R. Gow.
1998.
Candida dubliniensis: phylogeny and putative virulence factors.
Microbiology
144:829-838[Abstract].
|
| 8.
|
Jabra-Rizk, M. A.,
A. A. M. A. Baqui,
J. I. Kelley,
W. A. Falkler, Jr.,
W. G. Merz, and T. F. Meiller.
1999.
Identification of Candida dubliniensis in a prospective study of patients in the United States.
J. Clin. Microbiol.
37:321-326[Abstract/Free Full Text].
|
| 9.
|
Joly, S.,
C. Pujol,
M. Rysz,
K. Vargas, and D. R. Soll.
1999.
Development and characterization of complex DNA fingerprinting probes for the infectious yeast Candida dubliniensis.
J. Clin. Microbiol.
37:1035-1044[Abstract/Free Full Text].
|
| 10.
|
Kirkpatrick, W. R.,
S. G. Revankar,
R. K. McAtee,
J. L. Lopez-Ribot,
A. W. Fothergill,
D. I. McCarthy,
S. E. Sanche,
R. A. Cantu,
M. G. Rinaldi, and T. F. Patterson.
1998.
Detection of Candida dubliniensis in oropharyngeal samples from human immunodeficiency virus-infected patients in North America by primary CHROMagar Candida screening and susceptibility testing of isolates.
J. Clin. Microbiol.
36:3007-3012[Abstract/Free Full Text].
|
| 11.
|
Kreger-van Rij, N. J. W. (ed.).
1984.
The yeasts a taxonomic study, 3rd ed.
Elsevier Science Publishers B. V., Amsterdam, The Netherlands
|
| 12.
|
Kwon-Chung, K. J.,
W. S. Riggsby,
R. A. Uphoff,
J. B. Hicks,
W. L. Whelan,
E. Reiss,
B. B. Magee, and B. L. Wickes.
1989.
Genetic differences between type I and type II Candida stellatoidea.
Infect. Immun.
57:527-532[Abstract/Free Full Text].
|
| 13.
|
McCullough, M.,
B. Ross, and P. Reade.
1995.
Characterization of genetically distinct subgroup of Candida albicans strains isolated from oral cavities of patients infected with human immunodeficiency virus.
J. Clin. Microbiol.
33:696-700[Abstract].
|
| 14.
|
McCullough, M. J.,
K. V. Clemons, and D. A. Stevens.
1999.
Molecular and phenotypic characterization of genotypic Candida albicans subgroups and comparison with Candida dubliniensis and Candida stellatoidea.
J. Clin. Microbiol.
37:417-421[Abstract/Free Full Text].
|
| 15.
|
Meis, J. F.,
M. Ruhnke,
B. E. De Pauw,
F. C. Odds,
W. Siegert, and P. E. Verweij.
1999.
Candida dubliniensis candidemia in patients with chemotherapy-induced neutropenia and bone marrow transplantation.
Emerg. Infect. Dis.
5:150-153[Medline].
|
| 16.
|
Moran, G. P.,
D. J. Sullivan,
M. C. Henman,
C. E. McCreary,
B. J. Harrington,
D. B. Shanley, and D. C. Coleman.
1997.
Antifungal drug susceptibilities of oral Candida dubliniensis isolates from human immunodeficiency virus (HIV)-infected and non-HIV-infected subjects and generation of stable fluconazole-resistant derivatives in vitro.
Antimicrob. Agents Chemother.
41:617-623[Abstract].
|
| 17.
|
Moran, G. P.,
D. Sanglard,
S. M. Donnelly,
D. B. Shanley,
D. J. Sullivan, and D. C. Coleman.
1998.
Identification and expression of multidrug transporters responsible for fluconazole resistance in Candida dubliniensis.
Antimicrob. Agents Chemother.
42:1819-1830[Abstract/Free Full Text].
|
| 18.
|
Odds, F. C.,
L. Van Nuffel, and G. Dams.
1998.
Prevalence of Candida dubliniensis isolates in a yeast stock collection.
J. Clin. Microbiol.
36:2869-2873[Abstract/Free Full Text].
|
| 19.
|
Pfaller, M. A.,
S. A. Messer,
S. Gee,
S. Joly,
C. Pujol,
D. J. Sullivan,
D. C. Coleman, and D. R. Soll.
1999.
In vitro susceptibilities of Candida dubliniensis isolates tested against the new triazole and echinocandin antifungal agents.
J. Clin. Microbiol.
37:870-872[Abstract/Free Full Text].
|
| 20.
|
Pinjon, E.,
D. Sullivan,
I. Salkin,
D. Shanley, and D. Coleman.
1998.
Simple, inexpensive, reliable method for differentiation of Candida dubliniensis from Candida albicans.
J. Clin. Microbiol.
36:2093-2095[Abstract/Free Full Text].
|
| 21.
|
Salkin, I. F.,
W. R. Pruitt,
A. A. Padhye,
D. Sullivan,
D. Coleman, and D. H. Pincus.
1998.
Distinctive carbohydrate assimilation profiles used to identify the first clinical isolates of Candida dubliniensis recovered in the United States.
J. Clin. Microbiol.
36:1467[Free Full Text]. (Letter.)
|
| 22.
|
Schoofs, A.,
F. C. Odds,
R. Colebunders,
M. Ieven, and H. Goossens.
1997.
Use of specialised isolation media for recognition and identification of Candida dubliniensis isolates from HIV-infected patients.
Eur. J. Clin. Microbiol. Infect. Dis.
16:296-300[Medline].
|
| 23.
|
Sullivan, D., and D. Coleman.
1997.
Candida dubliniensis: an emerging opportunistic pathogen.
Curr. Top. Med. Mycol.
8:15-25[Medline].
|
| 24.
|
Sullivan, D., and D. Coleman.
1998.
Candida dubliniensis: characteristics and identification.
J. Clin. Microbiol.
36:329-334[Free Full Text].
|
| 25.
|
Sullivan, D.,
K. Haynes,
J. Bille,
P. Boerlin,
L. Rodero,
S. Lloyd,
M. Henman, and D. Coleman.
1997.
Widespread geographic distribution of oral Candida dubliniensis strains in human immunodeficiency virus-infected individuals.
J. Clin. Microbiol.
35:960-964[Abstract].
|
| 26.
|
Sullivan, D. J.,
M. C. Henman,
G. P. Moran,
L. C. O'Neill,
D. E. Bennett,
D. B. Shanley, and D. C. Coleman.
1996.
Molecular genetic approaches to identification, epidemiology and taxonomy of non-albicans Candida species.
J. Med. Microbiol.
44:399-408[Abstract].
|
| 27.
|
Sullivan, D. J.,
T. J. Westerneng,
K. A. Haynes,
D. E. Bennett, and D. C. Coleman.
1995.
Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals.
Microbiology
141:1507-1521[Abstract].
|
| 28.
|
Warren, N. G., and K. C. Hazen.
1999.
Candida, Cryptococcus, and other yeasts of medical importance, p. 1184-1199.
In
P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology, 7th ed. ASM Press, Washington, D.C
|
| 29.
|
Wickerham, L. J., and K. A. Burton.
1948.
Carbon assimilation tests for the classification of yeasts.
J. Bacteriol.
56:363-371[Free Full Text].
|
Journal of Clinical Microbiology, November 1999, p. 3533-3539, Vol. 37, No. 11
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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