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Journal of Clinical Microbiology, December 1999, p. 3800-3803, Vol. 37, No. 12
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Identification and PCR-Restriction Fragment Length Polymorphism
Analysis of a Variant of the Ibaraki Virus from Naturally Infected
Cattle and Aborted Fetuses in Japan
Seiichi
Ohashi,1,*
Kazuo
Yoshida,1
Youichirou
Watanabe,2 and
Tomoyuki
Tsuda1
Laboratory of Clinical Virology, Kyushu
Research Station, National Institute of Animal Health, 2702,
Chuzan, Kagoshima 891-0105,1 and
Central Livestock Hygiene Service Center, Kamifukumoto-cho,
5500, Kagoshima 891-0116,2 Japan
Received 15 March 1999/Returned for modification 7 June
1999/Accepted 8 September 1999
 |
ABSTRACT |
One hundred fourteen field isolates of the Ibaraki virus (IBAV), a
member of the epizootic hemorrhagic disease virus serotype 2 (EHDV-2),
were isolated from blood samples of affected and apparently healthy
cattle and Culicoides biting midges and from blood samples of dams and internal organs of aborted fetuses during an outbreak of
Ibaraki disease in the southern part of Japan in 1997. In this outbreak, 242 cattle showed typical symptoms of the disease, and several hundred dams had miscarriages or stillbirths. The viruses that
induced typical Ibaraki disease and reproductive problems among cattle
were identical and were antigenically closely related to but distinct
from previous isolates of IBAV and EHDV-2. The virus was considered to
be a putative agent of this outbreak. Reverse transcription-PCR based
on segment 3 of the RNA genome of EHDV-2 and restriction fragment
length polymorphism analysis of the PCR products were conducted to
compare the genomes of the viruses. The results suggested that the
virus isolated in 1997 was a variant of IBAV and might be exotic.
 |
INTRODUCTION |
Ibaraki disease (IBAD) is an
arthropod-borne viral disease of cattle characterized by fever,
anorexia, and deglutitive disorder (15, 16). Since the first
recognition of the disease in Japan in 1959, epizootic occurrences of
the disease have been reported in Japan, Korea, and Taiwan (1,
11). The causative agent of IBAD is the Ibaraki virus (IBAV),
which belongs to the epizootic hemorrhagic disease virus (EHDV)
serogroup in the genus Orbivirus in the family
Reoviridae. Ten different serotypes of EHDV are known to
exist worldwide (6). IBAV has been demonstrated to be
closely related serologically to but distinct from the Alberta strain
of EHDV serotype 2 (EHDV-2) (2, 18).
The virion contains 10 double-stranded (ds) genome segments. Each of
the segments encodes various structural and nonstructural viral
proteins (9, 10, 13). One of these, segment 3 of the RNA
genome (RNA3), encodes a serogroup-specific antigen, VP3. Recently,
researchers demonstrated that reverse transcription (RT)-PCR with
primers based on the sequence of RNA3 was a useful tool for the
detection and differentiation of the EHDV serogroup (8, 12).
IBAD occurred on an epidemic scale in the late summer to autumn of 1982 and 1987 in the western parts of Japan. After the last outbreak in
1987, the next epidemic of the disease occurred from August to November
1997 in the same area. In the latter outbreak, numerous abortions and
stillbirths were reported among cattle, in addition to the typical
symptoms of IBAD. The viruses were isolated from the blood of affected
and apparently healthy animals and from aborted fetuses and
Culicoides biting midges. This paper describes the
identification of the suspected causal agent and the genetic comparison
with previous isolates of IBAV and EHDV by PCR-restriction fragment
length polymorphism (RFLP) analysis.
 |
MATERIALS AND METHODS |
Viruses and cells.
The Ibaraki-2 (16) and Y87061
strains of IBAV were isolated from the blood of infected cows in 1959 and 1987, respectively. The following EHDV strains were used in this
experiment: New Jersey (serotype 1), Alberta (serotype 2),
CSIRO439 (serotype 2), CSIRO157 (serotype 7), CSIRO753 (serotype 8),
CSIRO775 (serotype 9), and DPP 59 (serotype 10). All viruses were
propagated on hamster lung (HmLu-1) cells and baby hamster kidney
(BHK-21) cells. The cells were grown in Eagle's minimum essential
medium (MEM; Nissui Pharmaceutical Co., Tokyo, Japan) supplemented with
0.295% tryptose phosphate broth (Difco Laboratories, Detroit, Mich.),
0.15% NaHCO3, 2 mM L-glutamine, and 10% calf
serum. The viruses were inoculated onto a cell monolayer that had been
washed three times with Earle's solution and were cultured with
serum-free MEM. Infectious culture fluid was harvested when the cells
showed a complete cytopathic effect (CPE).
Virus isolation.
The heparinized blood samples were
collected from cattle with typical symptoms of IBAD and from cattle
raised in the same cowshed with the affected animals. Blood samples
were also taken from dams which had a miscarriage or a stillbirth.
These blood samples were separated into plasma and erythrocytes, and
the erythrocytes were washed three times with phosphate-buffered saline
to eliminate the antibodies. The internal organs of the fetuses, the
placenta, and Culicoides biting midges were homogenized with
MEM. All samples were stored at
80°C until use. The cells grown in
test tubes were washed three times with Earle's solution before
inoculation with samples. After inoculation with 0.1 ml of the samples,
the cells were incubated with 0.4 ml of MEM supplemented with
antibiotics at 37°C for 7 days. The cultures were passaged in the
same manner until a CPE was observed.
Production of hyperimmune serum.
Hyperimmune sera against
viruses were raised in rabbits. Fluid from cultures of the virus on
BHK-21 cells was centrifuged at 5,600 × g for 20 min
at 4°C and was concentrated by precipitation with 50% saturated
ammonium sulfate. Purified virus was obtained at the interface of the
discontinuous gradient of 20 and 50% (wt/vol) sucrose in
phosphate-buffered saline after centrifugation at 100,700 × g for 2 h at 4°C (SW 28.1 rotor; Beckman Coulter Inc.,
Fullerton, Calif.). The rabbits were immunized once intradermally with
a mixture of purified virus and Freund's complete adjuvant (Dia-iatron Co., Ltd., Tokyo, Japan) and, 3 weeks later, subcutaneously with a
mixture of purified virus and Freund's incomplete adjuvant (Dia-iatron Co., Ltd.). The serum was collected 10 days after the booster immunization.
Serum neutralization test.
Antiserum was serially diluted
twofold with serum-free MEM in a flat-bottom 96-well microplate
(Sumitomo Bakelite Co., Tokyo, Japan). One hundred 50% tissue culture
infective doses of virus were added to each dilution. The mixtures were
incubated at 37°C for 1 h, and then HmLu-1 cells suspended in
serum-free medium (GIT; Wako Pure Chemical Industries, Ltd., Osaka,
Japan) were added to each well. After incubation at 37°C for 7 days
in a humidified 5% CO2 atmosphere, the antibody titers
were expressed as a reciprocal of the highest dilution of sera that
completely inhibited the CPE.
Preparation of viral dsRNA.
The viral dsRNA was extracted
from infected BHK-21 cells by the method described by Siaz-Ruiz and
Kaper (17). Briefly, infected BHK-21 cells were homogenized
in TE buffer (2 mM Tris-HCl, 1 mM EDTA [pH 8.0]). After
centrifugation, the supernatant was disrupted in 1% sodium dodecyl
sulfate-0.4 M NaCl. The nucleic acid was precipitated by phenol
extraction and ethanol precipitation. The pellet was resuspended in 1 mM EDTA solution (pH 5.0), and then an equal volume of 4 M LiCl
solution was added and the mixture was kept at 4°C for 8 h.
After removal of the precipitant by centrifugation, an equal volume of
8 M LiCl solution was added to precipitate the viral dsRNA, and the
mixture was kept at 4°C for 8 h. The final pellet was
reconstituted in TE buffer (10 mM Tris-HCl, 1 mM EDTA [pH 8.0]). The
viral dsRNA was separated on a 0.9% agarose gel (FMC Bioproducts,
Rockland, Maine) for 60 min at 100 V. The gel was stained with ethidium
bromide and was visualized under UV light and photographed.
RNA extraction and RT-PCR.
Viral RNA was extracted from
virus culture fluid with a High Pure Viral RNA kit in accordance with
the manufacturer's instruction (Roche Diagnostics-Boehringer Mannheim,
Mannheim, Germany). The primers (L3-1
[5'-CCCAGATGTTCAATAGCGAACCTAATC-3'] and L3-2
[5'-TAACATTTCGTTA TAGCAATAGTAGTT-3']) were synthesized on
the basis of the sequence of RNA3 of EHDV described elsewhere
(12). RT-PCR was performed with a TaKaRa RNA PCR kit (with
RTase from avian myeloblastosis virus), version 2.1 (TaKaRa Shuzo Co.,
Ltd., Shiga, Japan), with some modifications. Briefly, the cDNA was
synthesized at 42°C for 30 min after preincubation with both primers
at 94°C for 4 min and then on ice. For PCR amplification, the PCR
mixture (5 mM MgCl2, 1× PCR buffer, 2.5 U of
Taq polymerase) was added to the RT reaction mixture. PCR
was carried out with 28 cycles of denaturation at 94°C for 30 s,
annealing at 60°C for 30 s, and elongation at 72°C for 90 s. The PCR products were separated on a 1.5% agarose gel at 100 V for
40 min. After staining with ethidium bromide, the gel was visualized
under UV light and photographed.
RFLP analysis of PCR products.
The complete nucleotide
sequence of the RNA3 of an Australian isolate of EHDV-2 and the partial
nucleotide sequence of IBAV have been reported elsewhere
(7). The predicted PCR products of EHDV-2 and IBAV have been
shown to be cut at five and at least two sites, respectively, with
restriction enzyme Sau3AI, and those of IBAV has been shown
to be cut at at least one site with restriction enzyme
HaeIII. The PCR products were digested with
HaeIII and Sau3AI (TaKaRa Shuzo Co., Ltd.),
followed by ethanol precipitation. All reactions were performed at
37°C for 60 min. Restriction fragments were separated on a 2.0%
agarose gel, and the gel was observed as described above.
 |
RESULTS |
Virus isolation.
IBAD occurred from August through November
1997 in nine prefectures in the western part of Japan. During that
outbreak, 242 cattle showed clinical symptoms and were diagnosed with
IBAD on the basis of serological examination to confirm the
seroconversion to IBAV. During the same period, several hundred cases
of abortions and stillbirths occurred among cattle in the same
prefectures. A total of 114 virus isolates were obtained from blood
samples from both affected and apparently healthy cattle and from the samples from the fetuses and Culicoides biting midges.
Fifty-three, 3, and 11 isolates were isolated from erythrocytes,
plasma, and whole blood, respectively, of cattle exhibiting typical
IBAD symptoms and cattle raised in the same cowshed with affected
animals. These 67 isolates are referred to as IBAD relatives.
Thirty-five and two isolates were from the aborted fetuses and
placentas, respectively. Seven isolates were obtained from the blood of
dams that had a miscarriage or stillbirth and from the blood of cattle
raised in the same cowshed with the affected animals. These 44 isolates are referred to as abortion or stillbirth relatives. Three virus isolates were obtained from Culicoides biting midges caught
during the epidemic period of the disease.
Neutralization test.
An isolate, designated KS(H-22)P/97, was
chosen from among the isolates of IBAD relatives, and its serological
relationship to IBAV and EHDV was investigated via the
cross-neutralization test. As shown in Table
1, antisera to the Ibaraki-2 and Y87061 strains of IBAV equally neutralized the homologous strain at titers up
to 64 to 128 as well as the CSIRO439 strain of EHDV. The Alberta strain
of EHDV was neutralized by antisera to Ibaraki-2 and Y87061 at titers
up to 8 and 16, respectively. KS(H-22)P/97 was neutralized by these
sera up to a titer of 8. On the other hand, antiserum to KS(H-22)P/97
neutralized the homologous strain at a titer of 64, whereas the
neutralization titers of the serum against other strains of IBAV and
EHDV were less than 16.
Genomic dsRNA profiles of viruses.
The genomic dsRNA profile
of KS(H-22)P/97 was determined by agarose gel electrophoresis and was
compared with those of strains Ibaraki-2 and Y87061 of IBAV and the
CSIRO439 strain of EHDV (Fig. 1). The
migration patterns of the genome segments of strain KS(H-22)P/97 were
identical to those of the other three strains of the virus. Segments 7 and 8 of the viruses seemed to migrate together.

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FIG. 1.
Agarose gel electrophoresis of viral dsRNA. The dsRNA
extracted from infected BHK-21 cells was electrophoresed through a
0.9% agarose gel and was stained with ethidium bromide. Lanes: 1, mock-infected cells; 2, IBAV Ibaraki-2; 3, IBAV Y87061; 4, KS(H-22)P/97; 5, EHDV-2 CSIRO439; M, pHY marker (TaKaRa Shuzo Co.,
Ltd.). The numbers 1 to 10 on the right indicate RNA segments 1 to 10, respectively.
|
|
RT-PCR.
To confirm the specificity of RT-PCR with the
synthesized primer pair, PCR was done with cDNA transcribed from dsRNA
extracted from IBAV and a different serotype of EHDV. The specific PCR
product, with an expected size of 659 bp, was amplified from the
Australian EHDV isolates, i.e., CSIRO439, CSIRO157, CSIRO753, CSIRO775,
and DPP 59, as well as the Ibaraki-2 and Y87061 strains of IBAV (Fig. 2A). No specific band was amplified for
the North American EHDV isolates, the New Jersey and Alberta strains
(Fig. 2A). The specific band was amplified from IBAD relatives,
abortion or stillbirth relatives, and isolates from
Culicoides biting midges in 1997. Figure 2B shows the
results of RT-PCR for representative isolates from different
prefectures, Hyogo (HG), Okayama (OY), Fukuoka (FO), Saga (SG),
Nagasaki (NS), Kumamoto (KM), Oita (OI), Miyazaki (MZ), Kagoshima (KS),
and Okinawa (ON).

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FIG. 2.
PCR amplification of IBAV and EHDV. (A) Lanes: 1, IBAV
Ibaraki-2; 2, EHDV-1 New Jersey; 3, EHDV-2 Alberta; 4, EHDV-2 CSIRO439;
5, EHDV-7 CSIRO157; 6, EHDV-8 CSIRO753; 7, EHDV-9 CSIRO775; 8, EHDV-10
DPP 59; M, pHY marker. (B) Lanes: 1, IBAV Ibaraki-2; 2, IBAV Y87061; 3, isolate from HG; 4, isolate from OY; 5, isolate from FO; 6, isolate
from SG; 7, isolate from NS; 8, isolate from KM; 9, isolate from OI;
10, isolate from MZ; 11, isolate from KS; 12, isolate from ON; M, pHY
marker.
|
|
RFLP analysis of PCR products.
The identities of the specific
PCR products were analyzed by RFLP analysis. The PCR products were
digested with either the HaeIII or the Sau3AI
restriction enzyme. Analysis of the RFLP patterns obtained with
HaeIII grouped the viruses into two types of Australian EHDV
and IBAV strains. All 114 isolates recovered in 1997 had the same RFLP
pattern as those of IBAV (Fig. 3A). The
RFLP patterns obtained with Sau3AI were rather
complicated (Fig. 4B). Three
Australian EHDV isolates, CSIRO439, CSIRO157, and CSIRO775, had the
same RFLP pattern as the Ibaraki-2 strain of IBAV. Australian EHDV
strains CSIRO753 and DPP 59 and IBAV strain Y87061 each had
different RFLP patterns. However, all 114 isolates recovered in
1997 had identical RFLP patterns, and the patterns were distinct
from those of EHDV and formerly recovered IBAV isolates (Fig. 3B).

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FIG. 3.
RFLP patterns of PCR products amplified from field
isolates in 1997. PCR products were digested with HaeIII (A)
and Sau3AI (B). Lanes: 1, IBAV Ibaraki-2; 2, IBAV Y87061; 3, isolate from HG; 4, isolate from OY; 5, isolate from FO; 6, isolate
from SG; 7, isolate from NS; 8, isolate from KM; 9, isolate from OI;
10, isolate from MZ; 11, isolate from KS; 12, isolate from ON; M, pHY
marker.
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|

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FIG. 4.
RFLP patterns of PCR products amplified from IBAV and
EHDV. PCR products were digested with HaeIII (A) and
Sau3AI (B). Lanes: 1, IBAV Ibaraki-2; 2, EHDV-2 CSIRO439; 3, EHDV-7 CSIRO157; 4, EHDV-8 CSIRO753; 5, EHDV-9 CSIRO775; 6, EHDV-10 DPP
59; M, pHY marker.
|
|
 |
DISCUSSION |
During the epidemic of IBAD in 1997, affected cattle
showed typical symptoms of the disease, i.e., fever, anorexia, and
disturbance of deglutition. Sixty of the animals died of aspiration
pneumonia, dehydration, and emaciation resulting from difficulty with
swallowing. In such animals, degeneration of striated muscular tissue
was observed in the esophagus, larynx, pharynx, tongue, and skeletal muscles. These clinical and pathological findings are identical to
those that occur with IBAD (15). Although subclinical or inapparent infection with IBAV has frequently occurred, abortion and
stillbirth of cows had not been reported in previous outbreaks. During
the outbreak in 1997, numerous cases of abortions and stillbirths among
cattle were observed together with IBAD. A total 114 virus isolates
were obtained from the blood of affected animals and cattle raised in
the area where the epidemic occurred and from fetuses and
Culicoides biting midges that were suspected as being the
vectors. The results of RFLP analysis with HaeIII and
Sau3AI with these viruses revealed that all of the isolates
were identical and had the same origin. Furthermore, the virus seemed
to cause not only typical symptoms of IBAD but also abortions and
stillbirths in cows.
The results of a neutralization test indicated that strain
KS(H-22)P/97 was closely related to IBAV and EHDV-2. However, the isolate was distinct from strains of both virus groups. Strain CSIRO439
was most closely related to the prototype Ibaraki-2 and Y87061 strains
of IBAV, as described previously (5), while strain
KS(H-22)P/97 was distinct from the Ibaraki-2 and Y87061 strains of IBAV and the CSIRO439 strain of EHDV-2. The antigenic relationship between KS(H-22)P/97 and the North American
EHDV-2 strains is not clear. The genomic dsRNA profile revealed that strain KS(H-22)P/97 belongs to the same genotype that
includes the Ibaraki-2, Y87061, and CSIRO439 strains.
The sequence of RNA3 of EHDV has been demonstrated to be highly
conserved, with more than 90% homology among cognate genes of the same EHDV topotype (3, 7, 19). The primer pair based on the sequence of the RNA3 gene of EHDV allowed successive detection of Australian EHDV and IBAV strains as well as isolates recovered in 1997. McColl and Gould (12) revealed that the
specific PCR product of IBAV was not obtained at the high-stringency
annealing temperature at 65°C but that it was obtained when the
temperature was reduced to 37°C. In this experiment, the specific
products were obtained from both EHDV and IBAV at an annealing
temperature of 60°C. The serogroup-specific primer used in this
study, however, did not amplify the genes of the North American EHDV
strains. Although the nucleotide sequences of RNA3 of the Australian
EHDV and North American EHDV strains had 79% homologies (7,
19), the nucleotide sequences of the North American EHDV strains
were substituted at the 3' end of the primer annealing site. The
failure of specific amplification in North American EHDV strains
might be caused by this substitution. The RT-PCR could not
directly distinguish IBAV from Australian EHDV strains, contrary to the results described by McColl and Gould (12).
RFLP analysis of PCR products allowed grouping of the viruses. Analysis
of the RFLP pattern obtained by digestion with HaeIII grouped viruses into distinct topotypes of Australian EHDV and IBAV
(Japanese EHDV) strains. The isolates recovered in 1997 were grouped
into IBAV. Although the RFLP pattern obtained by digestion with
Sau3AI indicated that the genomic variation existed in a topotype among Australian EHDV and IBAV strains, further information including determination of the nucleotide sequence would be needed to
reveal the phylogenic association. The RFLP pattern obtained by
digestion with Sau3AI suggested that the isolates
recovered in 1997 were unique strains of IBAV. The serological
surveillance data indicated that many arboviruses, including EHDV and
IBAV, are present in eastern and southeastern Asia (4, 14).
In Japan, import controls on animals and preventive efforts with vaccines have been used. The live attenuated vaccine derived from the
Ibaraki-2 strain has been demonstrated to be effective and safe.
National surveillance and intensive monitoring of yearlings as sentinel
cattle have been in place for a number of years, and until 1997, IBAD
had not been observed and no animals in the sentinel groups had
seroconverted since 1987. In addition to this history, the fact that
the outbreak of IBAD and reproductive problems had occurred in southern
parts of Japan in 1997 suggests that the virus was probably introduced
into Japan by infected Culicoides biting midges carried on
the wind from places where climate conditions were suitable.
 |
ACKNOWLEDGMENTS |
We thank Tomomi Kubo for technical assistance. We are
grateful to T. Nakayama (Hyogo, Japan), T. Fukutomi (Okayama, Japan), K. Ishibashi and Y. Uchinuno (Fukuoka, Japan), T. Koga (Saga, Japan), T. Tonokawa (Nagasaki, Japan), K. Ide (Kumamoto, Japan), A. Toshimitsu (Oita, Japan), K. Inai (Miyazaki, Japan), and T. Kokuba
and K. Nakamura (Okinawa, Japan) for providing us with virus isolates.
This work was supported by grants received from the Ministry of
Agriculture, Forestry, and Fishery of Japan.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Clinical Virology, Kyushu Research Station, National Institute of
Animal Health, 2702, Chuzan, Kagoshima 891-0105, Japan. Phone:
81-99-268-2078. Fax: 81-99-268-3088. E-mail:
ohashis{at}sat.affrc.go.jp.
 |
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Journal of Clinical Microbiology, December 1999, p. 3800-3803, Vol. 37, No. 12
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
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40: 3684-3688
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