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Journal of Clinical Microbiology, June 1999, p. 1832-1838, Vol. 37, No. 6
National Institute of Health, Department of
Medical Sciences, Ministry of Public Health, Nonthaburi,
Thailand1; Department of Pediatrics,
Sophia Children's Hospital, Erasmus University Rotterdam, 3000 DR
Rotterdam, The Netherlands2;
Laboratory of Microbiology and Pathology, Queensland Health,
Brisbane, Australia3; and Department
of Microbiology, Gifu University School of Medicine, Gifu,
Japan4
Received 1 December 1998/Returned for modification 21 January
1999/Accepted 18 March 1999
The prevalence of penicillin-resistant Streptococcus
pneumoniae in Thailand has dramatically increased over the last
decade. During a national survey, which was conducted from 1992 to
1994, 37.2% of the pneumococci isolated from the nasopharynges of
children with acute respiratory tract infections were penicillin
resistant (MIC, Streptococcus pneumoniae
is one of the leading bacterial pathogens causing illness and death
among young children, the elderly, and persons with underlying medical
conditions, such as immunocompromised patients (5).
Pneumococcal infection is usually preceded by colonization of the human
nasopharynx. This is an important step toward infection.
Consequently, pneumococcal colonization is an important risk
factor for developing disease. For instance, young children who are
frequently colonized with pneumococci more often develop acute otitis
media than do children who are not or less frequently colonized
(12, 19, 33, 43).
The prevalence of penicillin resistance among pneumococci, both
high-level resistance (MIC of >1 µg/ml) and intermediate-level resistance (MIC of 0.1 to 1 µg/ml), is alarmingly increasing
worldwide (4, 8, 14, 21-24, 42). International spread of a
restricted number of multiresistant pneumococcal clones has
significantly contributed to this increase. Soares and coworkers have
documented the spread of a multiresistant clone of serotype 6B from
Spain to Iceland in the late 1980s (35). This has resulted
in an epidemic of this clone, which was isolated with a frequency of up
to 12% as early as 1992 (22). In 1991, Munoz and
colleagues reported evidence for the intercontinental spread of a
multiresistant clone of S. pneumoniae serotype 23F from
Spain to the United States (26). This clone has subsequently
disseminated throughout the United States (25). Finally,
Gasc and colleagues in 1995 reported the spread of a multiresistant
pneumococcal clone of serogroup 9 from Spain to France (13).
The international clones 23F and 9V have been identified in many
countries all over the world (16, 30). Besides the
international spread of the clones 6B, 23F, and 9V, novel
penicillin-resistant and multiresistant clones in the former
Czechoslovakia, Spain, Japan, and South Africa that tend to spread in
an epidemic manner within these countries have been reported (6,
30, 31, 34, 41).
In Thailand, a national survey conducted from 1992 to 1994 demonstrated
a prevalence of penicillin-resistant pneumococci (MIC of Bacterial strains.
In the survey conducted in 1978, susceptibility testing was performed with 446 isolates. One hundred
seventeen isolates were collected in Bangkok from patients who were
admitted to three university hospitals (Siriraj Hospital, Chulalongkorn
Hospital, and Ramathibodi Hospital) and a private hospital (Seventh Day Adventist Hospital). These pneumococci were collected mainly from blood
(26%), throat swab (23%), sputum (17%), cerebrospinal fluid (10%),
and pus (7%) samples. In addition, 329 isolates were obtained from
healthy carriers (ranging from 3 to 45 years of age) in Bangkok (80%)
and Samutprakarn (20%), a province near Bangkok. The survey conducted
in 1986 comprised 95 pneumococcal isolates from patients who were
admitted to the Siriraj University Hospital in Bangkok. The isolates
were collected mainly from blood (57%), sputum (20%), pus (12%),
cerebrospinal fluid (4%), and pleural fluid (4%) samples.
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Nasopharyngeal Carriage of Penicillin-Resistant
Streptococcus pneumoniae among Children with Acute
Respiratory Tract Infections in Thailand: a Molecular
Epidemiological Survey
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
0.1 µg/ml). In order to investigate the prevalence
and clonal relatedness of nasopharyngeal carriage of
penicillin-resistant S. pneumoniae in Thailand, a molecular
epidemiological survey was undertaken. To this end, 53 penicillin-resistant pneumococcal isolates from children who suffered
from acute respiratory tract infections and who originated from five
distinct regions of the country were characterized in detail. DNA
fingerprint analysis demonstrated 13 clusters, i.e., genotypes shared
by two or more strains, and 14 unique genotypes. The cluster size
varied from 2 (nine clusters) to 11 strains (one cluster). Six of the
13 restriction fragment end labeling clusters consisted of two or more
distinct serotypes, indicating frequent horizontal transfer of capsular genes. Geographical distribution of the genotypes among the five regions of Thailand demonstrated that only four genetic clusters were
restricted to single areas of the country, whereas the other nine
clusters represented isolates collected in two or more districts. These
observations demonstrate that the majority of the genetic clusters are
spread throughout the country. The most predominant genetic cluster,
representing 21% of the isolates, was identical to the Spanish
pandemic clone 23F. In addition, the second largest cluster matched the
Spanish-French international clone 9V. These data indicate that the
genetic clones 23F and 9V, which are widely spread throughout the
world, are the most predominant multidrug-resistant pneumococcal clones
in Thailand. Therefore, we conclude that these pandemic clones are
primarily responsible for the increase in the prevalence of
pneumococcal penicillin resistance in Thailand.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
0.1 µg/ml)
as high as 37.2% (1, 29, 37). This figure was much higher
than those in the surveys in 1978 (6.7%) (36) and in 1987 (10.6%) (20). In order to identify the nature of the
increase in the prevalence of penicillin-resistant pneumococci in
Thailand, a molecular epidemiological study was undertaken. To this
end, strains isolated from the nasopharynges of 53 pediatric patients,
who suffered from acute respiratory tract infections and who originated
from different regions across the country, were examined. The
pneumococcal isolates were characterized by restriction fragment end
labeling (RFEL) analysis, BOX PCR typing, penicillin-binding protein
(PBP) genotyping, serotyping, and drug susceptibility testing.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
0.1 µg/ml). Twenty-six of 36 high-level penicillin-resistant
pneumococcal isolates (MIC of >1.0 µg/ml) and 27 of 161 intermediate-level-resistant pneumococci (MIC of 0.1 to 1 µg/ml) were
randomly selected for this study (Table
1).

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FIG. 1.
Geographical map of Thailand. The medical centers
collaborating in this study are indicated by numbers: 1, Children's
Hospital Bangkok (central region); 2, Cholburi Hospital (eastern
region); 3, Khonkaen Hospital (northeastern region); 4, Maharaj Nakorn
Ratchasima Hospital (northeastern region); 5, Phra Buddha Chinaraj
Hospital (northern region); 6, Hatyai Hospital (southern region). The
geographical regions serviced by the medical centers are depicted by
open circles.
TABLE 1.
Prevalence of penicillin-resistant pneumococci among
1,783 children with acute respiratory
tract infectionsa
70°C and subcultured at 37°C on Columbia agar (Oxoid) supplemented with 5% sheep blood with 5% CO2. Bacterial
suspensions were prepared in 0.9% NaCl from 24-h agar cultures and
adjusted to a McFarland turbidity standard of 0.5. Suspensions were
further diluted (1:10) in saline. The inocula were applied on the test plates with a multipoint inoculator, resulting in about 104
CFU per spot. MICs were read after 24 h of incubation at 37°C with 5% CO2.
The antimicrobial agents tested were penicillin G (Sigma Chemical Co.,
St. Louis, Mo.), erythromycin (Abbott Laboratories, Ltd., Queenborough,
Kent, United Kingdom), doxycycline (Pfizer S. A., Brussels,
Belgium), vancomycin (Eli Lilly & Co., Indianapolis, Ind.), rifampin
(Sigma), cotrimoxazole, the combination (1:19) of trimethoprim (Sigma)
and sulfamethoxazole (Sigma), and ciprofloxacin (Bayer, Wuppertal,
Germany). Breakpoints of the antibiotics to discriminate between
susceptible and nonsusceptible strains were used according to the
National Committee for Clinical Laboratory Standards guidelines for
susceptibility testing (28).
Bacterial typing. (i) Serotyping. Pneumococci were serotyped on the basis of capsular swelling (quellung reaction) observed microscopically after suspension in antisera prepared at Statens Seruminstitut, Copenhagen, Denmark (11).
(ii) RFEL analysis.
Typing of pneumococcal strains by RFEL
was performed as described by Van Steenbergen et al. (40)
and adapted by Hermans et al. (18). Briefly, purified
pneumococcal DNA was digested by the restriction enzyme
EcoRI. The DNA restriction fragments were end labeled at
72°C with [
-32P]dATP with Taq DNA
polymerase (Goldstar; Eurogentec, Seraing, Belgium). The radiolabeled
fragments were denatured and separated electrophoretically on a 6%
polyacrylamide sequencing gel containing 8 M urea. Subsequently, the
gel was transferred onto filter paper, vacuum dried (Haake Buchler
Instruments Inc., Saddlebrook, N.Y.), and exposed for varying periods
at room temperature to ECL Hyperfilms (Amersham, Little Chalfont,
Buckinghamshire, United Kingdom).
(iii) BOX PCR typing. BOX PCR typing was carried out as described before (39). Briefly, 50 ng of pneumococcal DNA was amplified by PCR (4 min at 94°C [predenaturation]; 40 cycles of 1 min at 94°C, 1 min at 60°C, and 2 min at 74°C; and 2 min at 74°C [extension]), with primer BOX-A, designed on the primary structure of the BOX repeat motif. The amplified products were separated on a 1.5% agarose gel. Gels were stained with ethidium bromide, after which the banding patterns were evaluated visually. BOX PCR patterns showing a single band difference were defined as nonidentical types. BOX PCR was used as a confirmatory method to verify genetic clustering observed by RFEL analysis.
(iv) PBP genotyping. Genetic polymorphism of the penicillin resistance genes pbp1a, pbp2b, and pbp2x was investigated by restriction fragment length polymorphism analysis. To this end, we amplified the genes by PCR and analyzed the digested DNA products by agarose gel electrophoresis. PCR amplification of the PBP-encoding genes was performed in a 50-µl PCR buffer system containing 75 mM Tris-HCl (pH 9.0), 20 mM (NH4)2SO4, 0.01% (wt/vol) Tween 20, 1.5 mM MgCl2, 0.2 mM deoxynucleoside triphosphate, 10 pmol of the individual primers, 0.5 U of Goldstar Taq DNA polymerase (Eurogentec, Liège, Belgium), and 10 ng of purified chromosomal DNA. Cycling was performed in a PTC-100 programmable thermal controller (MJ Research, Watertown, Mass.) and consisted of the following steps: predenaturation at 94°C for 1 min; 30 cycles of 1 min at 94°C, 1 min at 52°C, and 2 min at 72°C; and final extension at 72°C for 3 min. The primers used to amplify the genes pbp1a, pbp2b, and pbp2x were described previously (7, 10, 26). The amplification products (5 µl) were digested by restriction endonuclease HinfI and separated by electrophoresis in 2.5% agarose gels (5 mm thick; Agarose MP; Boehringer Mannheim, Almere, The Netherlands) containing 0.5× Tris-borate-EDTA and 0.1 µg of ethidium bromide per ml. Gels were run in 0.5× Tris-borate-EDTA containing 0.1 µg of ethidium bromide per ml at a constant current of 20 mA for 4 h. Prior to electrophoresis, samples were mixed with a 5× concentrated layer mix consisting of 50% glycerol in water and 0.8 mg of bromophenol blue per ml. Gels were photographed with a Polaroid MP4 Land camera and Polaroid 667 films. The different PBP genotypes are represented by a three-number code (e.g., 1-6-13), referring to the restriction fragment length polymorphism patterns of the genes pbp1a (pattern 1), pbp2b (pattern 6), and pbp2x (pattern 13), respectively.
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RESULTS |
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From 1992 to 1994, the prevalence of penicillin-resistant
pneumococci in Thailand was determined during a national antimicrobial resistance survey. This study showed a country-wide penicillin resistance rate (MIC of
0.1 µg/ml) of 37.2%; 6.8% of the
pneumococcal isolates showed high-level resistance to penicillin,
whereas 30.4% of the isolates were intermediate-level resistant (Table
1). The resistance rates varied from region to region, ranging from 17.1% in Hatyai Hospital (southern region) to 59.2% in Phra Buddha Chinaraj Hospital (northern region). The latter region had the highest
prevalence of high-level pneumococcal penicillin resistance (28.6%),
followed by the Children's Hospital Bangkok (central region; 6.9%).
Twenty-three of the 26 randomly selected high-level penicillin-resistant isolates and 14 of the 27 intermediate-level penicillin-resistant isolates were resistant to more than three antibiotics with resistance profile
penicillin-trimethoprim-sul-famethoxazole-doxycycline-erythromycin-chloramphenicol, penicillin-trimethoprim-sulfamethoxazole-doxycycline-eryth-romycin, or
penicillin-trimethoprim-sulfamethoxazole-doxycycline-chloramphenicol. None of the isolates were resistant to vancomycin, rifampin, or ciprofloxacin.
All 53 penicillin-resistant pneumococcal isolates were analyzed by RFEL. This DNA fingerprint method divided the strains into 27 distinct types (Fig. 2 and Table 1). These RFEL types represented 13 clusters, i.e., types shared by two or more strains, and 14 unique types. Thirty-nine strains shared RFEL types with at least one other strain (74%). The cluster size varied from 2 (nine clusters) to 11 strains (one cluster). In addition, two clusters of three strains and one cluster of four strains were observed. For 10 RFEL clusters, genetic identity was confirmed by BOX PCR typing. Within the remaining three RFEL clusters, strong genetic relatedness was observed by BOX PCR typing (data not shown). Although the degree of genetic clustering, i.e., the percentage of strains sharing their RFEL types with one or more other strains, was comparable between the groups of high-level and intermediate-level penicillin-resistant strains (high level, 50%; intermediate level, 48%), a reduced number of RFEL types was observed among the high-level penicillin-resistant isolates (15 high-level penicillin resistance RFEL types and 20 intermediate-level penicillin resistance RFEL types [Fig. 2]).
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Comparison of the 27 Thai RFEL types with 107 additional types present in the international RFEL data library and representing 15 other countries (15, 16) revealed that the most predominant cluster matched the Spanish pandemic clone 23F (RFEL type 15), whereas RFEL cluster 23, representing four 9V strains, was identical to the Spanish-French international clone 9V, respectively. Strain P390, displaying RFEL type 17, was genetically identical to a penicillin-resistant pneumococcal strain isolated in The Netherlands. In addition, the remaining 24 Thai RFEL types did not match any of the 107 types present in the international library.
The 53 pneumococcal isolates comprised eight distinct serotypes. In
addition, one strain displayed a nontypeable capsular type. The
capsular types of the high-level-resistant isolates were restricted to
6A, 6B, 9V, 19F, and 23F. The intermediate-level penicillin-resistant
pneumococci harbored the serotypes 6A, 6B, 9V, 14, 15B, 15C, 19F, and
23F (Table 2). Six of the 13 RFEL clusters consisted of two or more distinct serotypes. The most predominant RFEL cluster, 15, consisting of 11 strains, harbored three
distinct serotypes, 23F, 19F, and 14 (Table 2). Based on the serotype
distribution of the 53 penicillin-resistant pneumococci, 89% of the
strains display capsular types that are covered by the 7-valent
conjugate vaccine in which the serotypes 4, 6B, 9V, 14, 18C, 19F, and
23F are represented.
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The 53 penicillin-resistant pneumococcal strains were collected in six hospitals representing five regions of the country: Children's Hospital Bangkok (central region; n = 23), Cholburi Hospital (eastern region; n = 6), Khonkaen Hospital and Maharaj Nakorn Ratchasima Hospital (northeastern region; n = 4 and 4, respectively), Phra Buddha Chinaraj Hospital (northern region; n = 15), and Hatyai Hospital (southern region; n = 1). The RFEL clusters 66 (n = 2), 67 (n = 2), 68 (n = 2), and 70 (n = 2) were observed in single regions of the country, whereas the other nine clusters represented isolates collected in two or more regions (Table 2).
All strains were analyzed by PBP genotyping. Sixteen distinct PBP genotypes were observed. The representative types are summarized in Fig. 3. The PBP types 1-1-1 and 1-10-13 were the most predominant penicillin resistance types and represented 16 and 10 strains, respectively. PBP type 1-1-1 was observed in four distinct RFEL types representing five distinct regions, whereas PBP type 1-10-13 was displayed by seven different RFEL types representing three distinct regions. Fourteen PBP type 1-1-1 strains (88%) and four PBP type 1-10-13 strains (40%) were high-level penicillin resistant (Table 2). The PBP types 1-1-1 and 1-10-13 were observed in 11 and 4 of the 16 countries that are currently represented in the international database (15). Twelve of the 16 PBP genotypes were Thailand specific, as they were not observed so far in any of the other countries representing 80 distinct PBP genotypes (15). The pbp2x type 13 was observed in 23 strains isolated in four distinct regions of the country and represented 17 RFEL types (Table 2). The vast majority of the 23 pbp2x type 13 strains displayed serotype 6B (n = 20). Comparison of the PBP genotypes of the individual genes pbp1a, pbp2b, and pbp2x between the 53 Thai penicillin-resistant strains and 185 Dutch and 10 Thai penicillin-susceptible pneumococcal isolates (17, 32) did not demonstrate any overlap (data not shown).
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DISCUSSION |
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In Thailand, a national survey conducted from 1992 to 1994 demonstrated a prevalence of penicillin-resistant pneumococci of 37.2% (1, 29, 37). This figure was much higher than that demonstrated in the surveys in 1978 (6.7%) (36) and in 1987 (10.6%) (20) (details of the 1978 and 1987 surveys are available in Materials and Methods). In order to identify the nature of the increase in the prevalence of penicillin-resistant pneumococci in Thailand, a molecular epidemiological study in which 53 penicillin-resistant pneumococcal isolates collected from 1992 to 1994 were analyzed in detail was conducted.
RFEL analysis of 53 penicillin-resistant pneumococcal isolates that were collected from children with acute respiratory tract infections in five distinct regions divided the strains into 27 distinct types. These RFEL types represented 13 clusters, i.e., types shared by two or more strains, and 14 unique types. Thirty-nine strains shared RFEL types with at least one other strain (74%). The degree of clustering among the penicillin-resistant isolates was comparable with that in data obtained in The Netherlands (17), a country with a very low prevalence of penicillin resistance (<1%). These data clearly demonstrate that the transmission behavior of these strains is comparable in both countries. The cluster size varied from 2 (nine clusters) to 11 strains (one cluster). The most predominant RFEL cluster, representing 21% of the isolates, was identical to the Spanish pandemic clone 23F (RFEL type 15) (26). In addition, the second largest RFEL cluster (RFEL type 23; four isolates) matched the Spanish-French international clone 9V (13). These data indicate that the pandemic clones 23F and 9V, which are widely spread throughout the world (15, 16, 38), are the most predominant multidrug-resistant pneumococcal clones in Thailand.
Although the five regions were not equally represented by pneumococcal isolates, geographical distribution of the genotypes among the five Thai regions demonstrated that only the RFEL clusters 66 (n = 2), 67 (n = 2), 68 (n = 2), and 70 (n = 2) were observed in single areas of the country, whereas the other nine clusters represented isolates collected in two or more districts. These data clearly suggest the national spread of the majority of the RFEL clusters. The majority of the RFEL types (24 of 27 types) were Thailand specific, as they did not match with any of the 107 RFEL types representing 15 other countries. In addition, the PBP genotypes also suggest a Thailand-specific origin: the majority of the PBP types (12 of 16 types) were not observed in the international collection. Nevertheless, since the pandemic clones 23F and 9V are most predominantly present in Thailand, we conclude that these imported clones are primarily responsible for the high prevalence of pneumococcal penicillin resistance in this country.
The increasing rate of antibiotic resistance in S. pneumoniae complicates the elimination of pneumococci by therapy
and strongly supports the application of new vaccine strategies.
Conjugate capsular vaccines contain a limited number of capsular
serotypes, linked to a carrier protein (3, 9). Although the
results of early trials with these vaccines look promising, care should be taken since several investigators have observed horizontal transfer
of capsular genes (2, 15-17). Horizontal transfer of capsular genes may interfere with vaccination programs in the long run
if (antibiotic-resistant) strains with a vaccine-type capsule switch to
nonvaccine capsular types. In Thailand, horizontal transfer of capsular
genes appears to occur frequently. Six of the 13 RFEL clusters
consisted of two or more distinct serotypes. The pandemic clone 23F
(RFEL cluster 15; 11 strains), harbored three distinct serotypes, 23F,
19F, and 14. Based on the serotype distribution of the 53 penicillin-resistant pneumococci, 89% of the strains display capsular
types that are covered by the 7-valent conjugate vaccine. However, it
is important to notice that in the collection investigated in this
study the number of high-level penicillin-resistant isolates is
overrepresented. Since the number of nonvaccine serotypes is higher in
the group of intermediate-level-resistant isolates, vaccine coverage of
penicillin-resistant pneumococci (MIC of
0.1) is therefore expected
to be lower than calculated.
The emergence of resistant strains and the rapid spread of resistant clones raise the need for an effective global surveillance system. Detailed studies on the epidemiology and epidemic behavior of (multi)resistant pneumococci will assist in identifying emerging clones. To this respect, close collaboration between the laboratories sharing interests in pneumococcal molecular epidemiology is of utmost importance. Extensive collaboration can be facilitated by the establishment of a freely accessible electronic network. Such a network can be used to exchange epidemiological information. Consequently, this network can be used to construct and distribute an international data library containing DNA fingerprints of (multi)resistant pneumococcal strains. This approach will facilitate adequate worldwide monitoring of the epidemiology of emerging (multi)resistant pneumococcal strains.
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ACKNOWLEDGMENTS |
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We are grateful to our colleagues responsible for the national survey of antimicrobial resistance of S. pneumoniae and Haemophilus influenzae in Thailand for providing the pneumococcal isolates: in particular, P. Sunakorn (chairman), A. Vejabhuti, S. Lochindarat, A. Teeraraatkul, V. Veerawerapong, S. Darnswang, P. Ratanakasetsin, P. Kittikhun, Y. Prompunjai, R. Pinyosmosorn, P. Yutayong, S. Chup-Uppakarn, Y. Sutivichit, S. Dusadeepituk, S. Wasanawat, and P. Wongveerakhan. T. Wattana, P. Rattanapiriyakul, and S. Poosup are greatly acknowledged for their technical assistance. We are also grateful to M. Kusum and P. Warachit for encouraging this study.
Part of this study was supported by the World Health Organization.
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FOOTNOTES |
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* Corresponding author. Mailing address: Laboratory of Pediatrics, Room Ee 1500, Erasmus University Rotterdam, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands. Phone: 31-10-4088224. Fax: 31-10-4089486. E-mail: hermans{at}kgk.fgg.eur.nl.
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