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Journal of Clinical Microbiology, July 1999, p. 2385-2386, Vol. 37, No. 7
0095-1137/99/$04.00+0
LETTERS TO THE EDITOR
Detection and Characterization of Novel Rotavirus Strains in
the United States
 |
LETTER |
Surveillance of rotavirus strains was first established in the
United States in 1987, through the analysis of G and P types of
isolates obtained in seven sentinel locations, mostly during multiple
consecutive rotavirus seasons extending from 1987 to 1993 (4,
14). Subsequently, this initial surveillance was expanded to 37 centers participating in a system of national reporting on year-round
rotavirus activity in order to assess geographic and temporal trends,
but without monitoring strain types (8, 15).
The composition and distribution of rotavirus types may vary in
distinct geographic and socioeconomic regions of the world, as
demonstrated in a study that compared data obtained in the United
States and in Brazil as models for the epidemiology of rotavirus in
temperate, developed and tropical, developing countries, respectively
(6). In this context, it was of interest to verify whether
the recent data reported by Ramachandran et al. (12) were
still in accordance with those obtained by Gouvea et al. (4)
and Santos et al. (14) for the United States in the previous decade. Indeed, the major epidemiological characteristics were confirmed: an overwhelming prevalence of conventional strains (83% in
the recent season versus 95% in previous seasons) with a predominance
of P[8]G1 strains (66 versus 71%) and very low proportions of mixed
infections (2.3 versus 3%) were found in the continental United
States. Differences in the sensitivities of the assays employed in the
two studies might have accounted for the small difference found in the
efficiencies of typing rotavirus strains (94.5% in the recent study
versus 100% in the old study). Nevertheless, contrary to Ramanchandran
et al.'s statement, a few strains bearing the supposedly attenuated
P[6] specificity had already been identified in association with
infant diarrhea in the United States (14). Some of those
isolates had been further sequenced and characterized, including the
oldest known and cell culture-adapted American P[6] strain, SC2
(13).
Of interest in Ramachandran et al.'s study was the finding of a small
percentage (7.2%) of strains of the G9 type in several Midwestern
states. Remarkably, however, G9 strains were not detected in the more
populated region of Philadelphia, where it had circulated a decade ago
(1, 12). Following the first identification of rotavirus
type G9 in the developed world (prototype strain WI61 in Philadelphia,
Pa., and strain F45 in Japan), it was also recognized as a cause of
infant diarrhea in the developing world (strain Mc323 in Chiang Mai,
Thailand, and an unnamed strain in Belém, Brazil) (1, 10,
11, 16). Molecular analysis revealed very high genomic identity
between strains WI61 and F45, suggesting that they might represent the
same emerging virus that had been successfully introduced into the
human population (5, 7). Most recently, genetically distinct
G9 strains were identified as common human rotaviruses in India and
frequent swine pathogens in Southern Brazil (2, 9), thus
supporting the suggestion that G9 strains might have emerged in the
human population from animal reservoirs by natural reassortment
(3, 16).
 |
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Diversity of porcine rotavirus in Paraná.
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Isolation and characterization of a serotype 9 human rotavirus strain.
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Ramachandran, M.,
J. R. Gentsch,
U. D. Parashar,
S. Jin,
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H. B. Greenberg,
S. Urasawa,
G. Gerne,
B. S. Coulson,
K. Tanaguchi,
J. S. Bresee,
R. I. Glass, and The National Rotavirus Strain Surveillance System Collaborating Laboratories.
1998.
Detection and characterization of novel rotavirus strains in the United States.
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36:3223-3229[Abstract/Free Full Text].
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Santos, N.,
V. Gouvea,
M. C. Timenetsky,
H. F. Clark,
M. Riepenhoff-Talty, and A. Garbarg-Chenon.
1994.
Comparative analysis of VP8* sequences from rotaviruses possessing M37-like VP4 recovered from children with and without diarrhoea.
J. Gen. Virol.
75:1775-1780[Abstract/Free Full Text].
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Santos, N.,
M. Ripenhoff-Talty,
H. F. Clark,
P. Offit, and V. Gouvea.
1994.
VP4 genotyping of human rotavirus in the United States.
J. Clin. Microbiol.
32:205-208[Abstract/Free Full Text].
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Torok, T. J.,
P. E. Kilgore,
M. J. Clarke,
R. C. Holman,
J. S. Bresee, and R. I. Glass.
1997.
Visualizing geographic and temporal trends in rotavirus activity in the United States, 1991 to 1996.
Pediatr. Infect. Dis. J.
16:941-946[Medline].
|
| 16.
|
Urasawa, S.,
A. Hasegawa,
T. Urasawa,
K. Taniguchi,
F. Wakasugi,
H. Susuki,
S. Inouye,
B. Pongprot,
J. Supawadee,
S. Suprasert,
J. Rangsiyanond,
S. Tonusin, and Y. Yamazi.
1992.
Antigenic and genetic analyses of human rotavirus in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses.
J. Infect. Dis.
166:227-234[Medline].
|
| | | | |
Vera Gouvea
Norma Santos
Department of Virology Instituto de Microbiologia Universidade Federal do Rio de Janeiro Rio de Janeiro, Brazil
|
 |
AUTHORS' REPLY |
Our study on rotavirus strain surveillance was designed to obtain data
on rotavirus strains currently circulating in the United States, in
anticipation of assessing the impact of a national rotavirus
vaccination program on strain diversity. One of our main conclusions
was that a strain believed to be uncommon globally, serotype G9, was
present in multiple U.S. cities and was one of two predominant strains
in one city, Indianapolis, in 1996. One hypothesis to explain these
results was that in the United States, these strains had been
previously underdetected because of inadequate strain surveillance or
lack of routine detection methods for G9 strains. Alternatively, since
these strains have been detected in humans from a number of countries,
including Japan (6, 10, 11), India (12),
Bangladesh (15), Malawi (3), and Thailand (16), and only once before in the United States
(2), the new finding that this strain was prevalent in
multiple U.S. cities could represent either the introduction of a new
strain or the emergence of that earlier isolate. The data presented by
Ramachandran et al. (13) were consistent with the emergence
of a distinct strain closely related to subgroup I human rotavirus
strains with short electropherotypes, and consequently, we did not
discuss a potential animal origin for these strains, a possibility that was raised in a study of G9 strains from Thailand (16). A
more recent study on the antigenic and genetic properties of several of
these strains supports the hypothesis that the recent U.S. P[6],G9
isolates are closest genetically to human rotaviruses of the DS-1
genogroup (8). Although we did not exhaustively cite all the
studies documenting the global importance of serotypes G1 to G4, we did
cite representative papers from the United States (9, 18),
Japan (17), and Italy (5).
A second conclusion of our study was that strains bearing the P[6]
genotype had been detected relatively frequently in multiple U.S.
cities for the first time. Previously, this genotype had been detected
frequently among infants with diarrhea only in developing countries,
for which we cited references from Timenetsky and coworkers from a
study in Brazil and from Ramachandran and coworkers in studies from
India (12, 14).
Regarding the failure to detect G9 strains in Philadelphia, where the
first U.S. isolates were identified (2), we are currently involved in targeted studies in Philadelphia examining strains from
both an earlier period (1995 to 1996) and a later period (1997 to
1998). G9 strains have been detected during both periods (1,
7), and many of the strains appear to be related to the
predominant strain from 1996 to 1997 (13). We anticipate that both of these studies will be submitted for publication in 1999.
 |
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| Clark, H. F. 1999. Personal
communication.
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Y. Hoshino,
L. M. Bell,
J. Groff,
G. Hess,
P. Bachman, and P. A. Offit.
1987.
Rotavirus isolate W161 representing a presumptive new human serotype.
J. Clin. Microbiol.
25:1757-1762.
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1989.
Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes.
Virology
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J. S. Bresee, R. I. Glass, and J. R. Gentsch.
Unpublished data.
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1999.
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K. Akatani,
N. Ikegami,
N. Katsushima, and O. Nakagomi.
1990.
Isolation and molecular characterization of a serotype 9 human rotavirus strain.
Microbiol. Immunol.
34:77-82.
|
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|
Ramachandran, M.,
B. K. Das,
A. Vij,
R. Kumar,
S. S. Bhambal,
N. Kesari,
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Ramachandran, M.,
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U. D. Parashar,
S. Jin,
P. A. Woods,
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C. D. Kirkwood,
R. F. Bishop,
H. B. Greenberg,
S. Urasawa,
G. Gerna,
B. S. Coulson,
K. Taniguchi,
J. S. Bresee,
R. I. Glass, and The National Rotavirus Strain Surveillance System Collaborating Laboratories.
1998.
Detection and characterization of novel rotavirus strains in the United States.
J. Clin. Microbiol.
36:3223-3229.
|
| 14.
|
Timenetsky, M. C.,
N. Santos, and V. Gouvea.
1994.
Survey of rotavirus G and P types associated with human gastroenteritis in Sao Paulo, Brazil, from 1986 to 1992.
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Unicomb, L. E.,
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1999.
Evidence of high-frequency genomic reassortment of group A rotavirus strains in Bangladesh: emergence of type G9 in 1995.
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Urasawa, S.,
A. Hasegawa,
T. Urasawa,
K. Taniguchi,
F. Wakasugi,
H. Suzuki,
S. Inouye,
B. Pongprot,
J. Supawadee,
S. Suprasert,
P. Rangsiyanond,
S. Tonusin, and Y. Yamazi.
1992.
Antigenic and genetic analyses of human rotaviruses in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses.
J. Infect. Dis.
166:227-234.
|
| 17.
|
Urasawa, S.,
T. Urasawa,
K. Taniguchi,
F. Wakasugi,
N. Kobayashi,
S. Chiba,
N. Sakurada,
M. Morita,
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Woods, P. A.,
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Distribution of serotypes of human rotavirus in different populations.
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30:781-785[Abstract/Free Full Text].
|
| | | | |
Jon R. Gentsch
Roger I. Glass
Viral Gastroenteritis Section Centers for Disease Control and Prevention Atlanta, Georgia
|
Journal of Clinical Microbiology, July 1999, p. 2385-2386, Vol. 37, No. 7
0095-1137/99/$04.00+0