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Journal of Clinical Microbiology, August 1999, p. 2473-2478, Vol. 37, No. 8
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Comparison of Molecular Methods for Typing
Vibrio parahaemolyticus
S.
Marshall,1
C. G.
Clark,2,*
G.
Wang,1
M.
Mulvey,1
M. T.
Kelly,3 and
W. M.
Johnson1,2
National Laboratory for Enteric
Pathogens2 and National Laboratory for
Outbreak Investigations and Antibiotic
Resistance,1 Laboratory Centre for Disease
Control, Health Canada, Ottawa, Ontario, and Provincial
Laboratory, B.C. Centre for Disease Control, Vancouver, British
Columbia,3 Canada
Received 18 November 1998/Returned for modification 3 March
1999/Accepted 27 April 1999
 |
ABSTRACT |
An outbreak of Vibrio parahaemolyticus gastroenteritis
on Canada's west coast in 1997 emphasized the need to develop
molecular methods for differentiation and typing of these organisms.
Isolates were analyzed by enterobacterial repetitive intergenic
consensus sequence (ERIC) PCR, detection of restriction fragment length polymorphisms (RFLP) in rRNA genes (ribotyping), pulsed-field gel
electrophoresis (PFGE), and RFLP analysis of the genetic locus encoding
the polar flagellum (Fla locus RFLP analysis). ERIC PCR and ribotyping
were the most informative typing methods, especially when used
together, while Fla locus RFLP analysis was the least discriminatory.
PFGE exhibited good discrimination but suffered from a high incidence
of DNA degradation. ERIC PCR and ribotyping will be useful for the
evaluation of genetic and epidemiological relationships among V. parahaemolyticus strains.
 |
INTRODUCTION |
Pathogenic Vibrio
parahaemolyticus strains cause gastroenteritis in humans after
they consume contaminated foods, most often raw or partially cooked
fish and shellfish (1, 7, 15). The organism is widely
disseminated in estuarine environments throughout the world
(9) and has been detected in oysters on Canada's Pacific
coast (12) and in the environment of western North America
as far north as Alaska (30). Outbreaks of V. parahaemolyticus food poisoning are most common in Japan and
southeast Asia (1, 22), though they occur occasionally in
other parts of the world. The number of cases detected in Canada to
this date is extremely low (14). Prior to 1997, only
sporadic cases of locally acquired gastroenteritis caused by
urease-positive, Kanagawa hemolysin-negative V. parahaemolyticus were detected on Canada's Pacific coast
(11, 13). A prospective study in this region demonstrated
that V. parahaemolyticus infection was locally acquired in
only 10 patients during a 3-year period, 1984 to 1987 (11),
and that the isolates were urease-positive, Kanagawa hemolysin-negative
strains (11). A recent outbreak of gastroenteritis in July
and August 1997 appears to have been caused by ingestion of uncooked or
undercooked oysters contaminated with V. parahaemolyticus
(6). V. parahaemolyticus was found in oysters
from several harvesting areas in the region, though only in low
numbers. In addition, no deficiencies in oyster processing or
distribution that could account for the outbreak were identified.
Subspecies typing of V. parahaemolyticus may be useful for
tracking the organisms implicated in the recent Canadian west coast outbreak as well as for gaining insight into the ecology of the organisms in Canadian waters. A number of molecular methods for typing
V. parahaemolyticus have been described. Restriction
fragment length polymorphism (RFLP) analysis of virulence or
virulence-associated genes has been a valuable tool for typing several
bacterial species, including Escherichia coli O157:H7
(26) and Vibrio cholerae (3, 4, 32,
34). In V. parahaemolyticus, the thermostable direct
hemolysin (TDH) and the TDH-related hemolysin, encoded by the
tdh and trh genes, respectively, are important
virulence factors involved in the production of gastroenteritis
(20, 27). However, it appears that due to conservation of
nucleotide sequences flanking the tdh and trh
genes in V. parahaemolyticus, RFLP analysis of these genes
lacks discriminatory power (21). Use of the arbitrarily primed PCR method gave higher resolution in that study. Wong et al.
(33) have recently described a method for pulsed-field gel electrophoresis (PFGE) capable of separating 130 strains into 39 patterns constituting 14 PFGE types. Analysis of 16S and 23S ribosomal
gene RFLPs and enterobacterial repetitive intergenic consensus sequence
(ERIC) PCR have previously proven useful for subtyping V. cholerae (2, 24, 25). The genes for the polar flagellum
of V. parahaemolyticus have been cloned and sequenced and
are arranged at two separate loci within the genome of this organism
(17, 28). Since flagellar gene RFLPs have been useful for
characterization of other organisms, most notably Campylobacter jejuni (18, 19, 22), RFLPs of the V. parahaemolyticus polar flagellum were investigated to determine if
they would be similarly useful for typing of this organism.
We therefore compared four methods for subtyping strains from a recent
V. parahaemolyticus outbreak on Canada's Pacific coast: PFGE, ribotyping, ERIC PCR, and RFLP analysis of the polar flagellum gene locus (Fla locus RFLP analysis). ERIC PCR appeared to have the
best discriminatory power, followed closely by ribotyping and PFGE. Fla
locus RFLP analysis was not as discriminatory as the other methods, but
it may provide an alternate rapid method for molecular typing.
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MATERIALS AND METHODS |
Strains.
Bacterial isolates from patients (38 isolates) and
environmental sources (16 isolates), collected during the 1997 outbreak by hospital microbiology staff and laboratory personnel at the B.C.
Centre for Disease Control, were submitted to the Laboratory Centre for
Disease Control (LCDC) in Ottawa for further characterization. Six
other human V. parahaemolyticus isolates from sporadic cases of gastroenteritis were submitted by provincial laboratories to the
LCDC laboratories; a total of 60 isolates were characterized. Bacteria
were maintained on slants of Institut Pasteur maintenance medium (10 g
of Difco peptone per liter, 5 g of Difco beef extract per liter,
3 g of NaCl per liter, 2 g of
Na2HPO4 · 12H2O per liter, 8 g of Difco granulated agarose per liter [pH 7.4]) at room
temperature in the dark for long-term storage. Subcultures frozen at
80°C in brain heart infusion broth (Difco) containing 15% glycerol were used to prepare working cultures.
DNA extraction.
Bacteria grown overnight on nutrient agar
plates were suspended in TNE buffer (10 mM Tris, 20 mM NaCl, 50 mM EDTA
[pH 7.5]). Sodium dodecyl sulfate and proteinase K were added to
yield final concentrations of 0.5% and 100 µg/ml, respectively, and
the bacterial suspensions were incubated at 55°C for 30 min. DNA was
extracted with phenol-chloroform-isoamyl alcohol (25:24:1),
precipitated with isopropanol, washed with 70% ethanol, and
resuspended in TE buffer (10 mM Tris-HCl, 1 mM EDTA [pH 8]).
ERIC PCR.
The ERIC 1R primer (5'-ATG TAA GCT CCT GGG GAT TCA
C-3') (31) used in this investigation was obtained from the
DNA Core Facility, Bureau of Microbiology, LCDC. The reaction mixture
(25 µl per reaction) consisted of a 200 µM concentration of each
deoxynucleoside triphosphate, 1× PCR buffer II (Perkin-Elmer, Foster
City, Calif.), 1.5 mM MgCl2, 2 µM ERIC 1R primer, 1.25 U
of AmpliTaq (Perkin-Elmer), and 100 ng of template DNA. PCR was
performed in a Perkin-Elmer 9600 thermal cycler. Following an initial
denaturation at 94°C for 5 min, genomic DNA was amplified through 35 cycles of 94°C for 10 min, 52°C for 1 min, and 72°C for 1 min.
PCR was completed with a final extension at 72°C for 10 min. Products
were separated by electrophoresis on 1.5% agarose gels containing
0.5× TBE (10× TBE is 0.89 M Tris base, 0.89 M boric acid, and 0.02 M
disodium EDTA [pH 8.4]; Boehringer Mannheim, Laval, Quebec, Canada),
followed by ethidium bromide staining and photography with a UV transilluminator.
Long PCR and Fla locus RFLP analysis.
PCR primers designed
to amplify a 6.6-kb fragment comprising most of the 8.3-kb locus
containing V. parahaemolyticus polar flagellar genes
flaB, flaA, flaG, flaH,
flaI, flaJ, and flaK, (17,
26) were obtained from the DNA Core Facility. The forward primer,
5'-TAC CTA AAC AAC GCA AAC TCA GCA CA-3', lies within flaB,
the first gene in the operon. The reverse primer, 5'-TGC GGT ATG ACG
AAT AGT GAA TG-3', is contained in flaK, the last gene in
the operon. Long PCR utilized reagents from the GeneAmp XL PCR kit
(Perkin-Elmer) in 50-µl reaction mixtures containing 1× XL buffer
II, a 200 µM concentration of each deoxynucleoside triphosphate, 30 pmol of each primer, 1.2 mM magnesium acetate, 3 U of recombinant
Tth DNA polymerase XL, and 40 ng of DNA template. Amplification was accomplished in a Perkin-Elmer 2400 thermal cycler
according to the following cycle parameters: initial denaturation at
94°C for 1 min; 16 cycles of 94°C for 15 s, 60°C for 30 s, and 68°C for 7 min; 17 cycles of 94°C for 15 s, 60°C for
30 s, and 68°C for 7 min 15 s; and final extension at
72°C for 10 min. After 6 µl of each PCR product was digested with a
restriction enzyme in a total volume of 30 µl for 3 h at 37°C,
15 µl of the final digest was analyzed on 2% agarose gels, stained,
and visualized as summarized above. Restriction enzymes tested were
chosen on the basis of the published flagellar locus gene sequence and
included DdeI, RsaI, TaqI, and
Sau3AI; double digestion by PstI and
SspI was also performed. RsaI performed best in
these initial experiments and was used for all subsequent analyses.
Ribotyping.
Genomic DNA was restricted for 6 h with
BglI, and fragments were separated on a 0.8% agarose gel. A
supercoiled DNA ladder (Gibco BRL, Burlington, Ontario, Canada)
linearized with PvuII was used as a size standard. After
electrophoresis, gels were stained with ethidium bromide and observed
under UV light to ensure that the DNA was completely digested. After
denaturation and neutralization, DNA in the gel was capillary blotted
onto a Hybond-N+ membrane (Amersham Life Science Inc., Oakville,
Ontario, Canada) and cross-linked to the membrane with a Stratalinker
2400 instrument (Stratagene; PDI Bioscience, Aurora, Ontario, Canada).
All subsequent procedures were done according to the protocol for
hybridization in tubes supplied with the enhanced chemiluminescence
(ECL) direct nucleic acid labeling and detection kit (Amersham Life
Science Inc.). Briefly, membranes were prehybridized in ECL
hybridization buffer for 1 h at 42°C. The rrnB rRNA
operon of E. coli was cut from plasmid pKK3535
(15), purified from the gels, and used as a probe for the
rRNA genes (16). A supercoiled DNA ladder (Gibco BRL) was
used as the probe for the size standard. Each probe (200 ng) was
denatured by boiling 5 min, labeled directly with horseradish peroxidase according to the manufacturer's directions, added
immediately to the hybridization buffer, and allowed to hybridize at
42°C overnight. Blots were then washed once in 5× SSC (20× SSC is
3.0 M NaCl plus 0.3 M sodium citrate, pH 7.0; Boehringer Mannheim), three times at 55°C in primary wash buffer without urea (0.1× SSC
containing 0.4% sodium dodecyl sulfate), and twice with 2× SSC, and
they were developed with ECL detection reagent followed by exposure to
Hyperfilm-MP photographic film (Amersham Life Science Inc.). No
cross-reactivity of the supercoiled DNA ladder probe with V. parahaemolyticus DNA was seen on blots labeled only with this probe.
PFGE.
Isolates were grown overnight at 37°C with shaking
in brain heart infusion broth with or without 2% NaCl added. Bacteria
were collected by centrifugation, washed with 500 µl of 75 mM
NaCl-25 mM EDTA (pH 7.9), centrifuged again, and suspended in 200 µl
of 10 mM Tris containing 20 mM NaCl and 50 mM EDTA (pH 7.9). A
suspension equivalent to McFarland standard 8 was prepared by adding
200 µl of 2% low-melting-point agarose (Boehringer Mannheim)
solution in TNE buffer. This suspension was transferred to disposable
plug molds (Bio-Rad Laboratories Ltd., Richmond, Calif.) and cooled to
4°C. Plugs were suspended in 1 ml of 250 mM EDTA (pH 8) containing 2 mg of proteinase K per ml and incubated at 55°C for 30 min. After
this time, 1 ml of 1.0% N-lauroylsarcosine (wt/vol) was added, and incubation was continued overnight at 55°C. Agarose plugs
were washed three times with TE buffer (pH 7.5) for 30 min per wash and
then were washed five times with distilled water for a minimum of 20 min per wash. After equilibration with restriction enzyme digestion
buffer A (Boehringer Mannheim) for 45 min, agarose-embedded DNA was
digested with 80 U of restriction enzyme overnight at 30°C. Initial
experiments on selected isolates indicated that NotI and
ApaI gave similar results; therefore, ApaI was
used in all analyses. Digestion was stopped by the addition of 100 µl of loading dye (30% glycerol, 0.25% bromophenol blue, and 0.25% xylene cyanol FF in distilled water), and plugs were melted for 15 min
at 69°C. Forty microliters of sample was added to a 1% agarose gel
made by using 0.5× TBE. Electrophoresis was performed for 24 h at
6 V/cm with a 1- to 18-s linear ramp time in a Bio-Rad CHEF-DR II
electrophoresis system. Gels were cooled to 14°C throughout the run.
After staining with ethidium bromide, banding patterns were visualized
with a UV transilluminator and photographed.
 |
RESULTS |
Patterns from the four typing methods were compared visually.
PFGE, ribotyping, and ERIC PCR differentiated strains into 15, 14, and
13 similar types, respectively, while Fla locus RFLP analysis generated
five discrete types (Table 1). In
addition, PFGE or ERIC PCR patterns differing by only one or two bands
were designated subtypes, resulting in 19 and 20 different patterns,
respectively. When the results from all four methods were combined, at
least 35 patterns were obtained from the 60 isolates. The largest
group, 14 strains, had identical patterns generated by all four methods and contained both outbreak strains and an environmental strain (T97-67), indicating that bacteria causing clinical cases of disease were likely derived from environmental sources.
All isolates from the 1997 V. parahaemolyticus outbreak on
Canada's Pacific coast segregated into four ribotype pattern groups (A, B, C, and F), which also contained four strains isolated from the
environment and three from sporadic cases of disease occurring in
previous years (Table 1). The remaining 12 environmental isolates were
distributed in eight different ribotypes, while each of the 2 remaining
isolates from sporadic cases had a unique ribotype pattern (Fig.
1). These data indicate that only a
subset of the bacteria present in the environment was represented in
the outbreak. Two isolates (T97-63 and -64) were considered untypeable
by this method after repeated failures to obtain sufficient quantities of restriction endonuclease-digested DNA for analysis; only smears were
seen on gels, suggesting that rapid nonspecific degradation of DNA took
place. Degradation of DNA was occasionally seen with some samples (Fig.
1, lane 5), but subsequent reisolation of DNA from these strains had
good yields and clear ribotype patterns (data not shown).

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FIG. 1.
Representative ribotype patterns of
BglI-digested DNA. Pattern designations are given in
parentheses. Lane 1, T97-31 (A); lane 2, T97-32 (B); lane 3, T97-33
(C); lane 4, T97-54 (D); lane 5, T97-57 (degraded DNA from isolate
exhibiting pattern E in subsequent analysis); lane 6, T97-45 (F); lane
7, T97-58 (G); lane 8, T97-60 (H); lane 9, T97-52 (I); lane 10, T97-61
(J); lane 11, T97-65 (K); lane 12, T97-66 (L); lane 13, T97-472 (M);
lane 14, T97-474 (N); lane M, PvuII-digested supercoiled
DNA, with sizes of selected standard bands shown at the right.
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Analysis of PFGE patterns revealed that the outbreak strains could be
divided into four types, A, B, C, and D. Strains in the A group could
be further divided into A1, A2, and A3 subtypes, differing by one to
three bands (Table 1; Fig. 2). Within the outbreak strains, the PFGE pattern generally coincided with the ribotype pattern, so that strains with ribotype pattern A had PFGE type
A1, A2, or A3, strains with ribotype pattern B had PFGE type B, strains
with ribotype pattern C had PFGE type C, and strains with ribotype
pattern F had PFGE type E (Table 1). The only exception was strain
T97-37, which had ribotype pattern B but PFGE type C. PFGE patterns B
and C differed by more than 10 bands (Fig. 2), suggesting that isolate
T97-37 was not closely related to other isolates having the same
ribotype, ERIC PCR, and Fla locus RFLP analysis patterns. Environmental
isolates showed greater variability, including eight different types
among nine strains plus six untypeable strains. With the exception of
strain T97-67, discussed above, none of the environmental strains had
the same PFGE types as outbreak strains. Similarly, strains isolated
from sporadic cases exhibited different PFGE types than either outbreak or environmental strains.

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FIG. 2.
Representative PFGE patterns for V. parahaemolyticus chromosomal DNA digested with ApaI.
Pattern designations are given in parentheses. Lane M, DNA
concatemer size standard, with sizes of selected bands given at the
left; lane 1, T97-31 (A1); lane 2, T97-34 (A2); lane 3, T97-450 (B);
lane 4, T97-42 (C); lane 5, T97-45 (D); lane 6, T97-52 (E); lane 7, T97-61 (I); lane 8, T97-65 (K).
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ERIC PCR differentiated the outbreak strains into six types, A, B, C,
D, H, and I (Table 1; Fig. 3). Dominant
bands in the ERIC PCR patterns were characteristic of types, while
differences in fainter bands allowed differentiation of subtypes.
Subtypes A1 and A2 differed by one band, subtypes B2 and B3 each had a one-band difference compared to subtype B1, and subtypes H2 and H3 each
had a one-band difference compared to subtype H1. A total of 10 subtypes were seen among outbreak isolates (Table 1; Fig. 3).
Environmental strains were grouped into seven different types, three
subtypes of which (A1, B1, and D) were also found in outbreak strains.
Unique ERIC PCR patterns were found in all isolates from sporadic cases
prior to 1997. Groups of outbreak isolates that were apparently
identical by ribotype and PFGE type were differentiated by ERIC PCR
(Table 1). In addition, while ribotyping found environmental isolates
T97-53, -55, -62, and -67 to be identical to 18 outbreak strains
producing ribotype pattern B, ERIC PCR identified 16 of these outbreak
isolates as having identity solely with strain T97-67. ERIC PCR also
detected identity between environmental isolates T97-63 and -64 and the
outbreak strain T97-461. In total, 18 of 38 outbreak isolates were
found to be identical to environmental isolates when either ERIC PCR or
ribotyping was used for comparison. Patterns generated by ERIC PCR were
reproducible in at least three different assays, though the intensities
of some of the fainter bands occasionally varied somewhat.

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FIG. 3.
ERIC 1R PCR profiles from selected V. parahaemolyticus isolates. Pattern designations are in
parentheses. Lane M, 100-bp ladder; lane 1, T97-31 (A1); lane 2, T97-32
(B1); lane 3, T97-33 (C1); lane 4, T97-56 (D); lane 5, T97-65 (G); lane
6, T97-450 (I); lane 7, T97-474 (L); lane 8, negative control.
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The polar flagellum locus containing the flaA and
flaB flagellin genes, genes for hook-associated proteins
(flaG and flaH), and other genes encoding
proteins comprising the flagellar apparatus (flaK,
flaJ, and flaK) was amplified by PCR and the
resulting product was digested with RsaI, which exhibited
the greatest number of polymorphisms and an optimal complexity of
banding patterns (Fig. 4). Only five
different patterns were obtained by Fla locus RFLP analysis. Type B was
common to organisms from the 1997 British Columbia outbreak that also
had ribotype B, organisms from the environment, and isolates from
sporadic cases of V. parahaemolyticus gastroenteritis prior
to 1997 (Table 1). Fla locus RFLP analysis and ribotyping identified
the same 18 outbreak isolates as being identical to environmental
isolates. The second most common Fla locus RFLP pattern, type C, was
associated only with outbreak strains having ribotypes C and F, while
type A was associated only with outbreak strains that had ribotype A
and with two isolates from sporadic cases before 1997. Fla locus RFLP
types D and E were each associated with only a single environmental
isolate.

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FIG. 4.
RFLP patterns obtained by RsaI digestion of
the product of PCR of the V. parahaemolyticus Fla locus.
Pattern designations are given in parentheses. Lanes M, 100-bp ladder;
lane 1, T97-31 (A); lane 2, T97-32 (B); lane 3, T97-33 (C); lane 4, T97-58 (D); lane 5, T97-56 (E).
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 |
DISCUSSION |
The molecular typing methods used here were helpful for
differentiating isolates obtained from patients during the outbreak. There was a strong correspondence among ribotypes, PFGE types, and Fla
locus RFLP types for the 38 outbreak isolates when compared with a
background of heterogeneous environmental strains, suggesting that the
outbreak isolates were derived from a limited number of initial
sources. The correspondence of ERIC PCR types with types identified by
the other three methods was not as strong. One environmental isolate,
however, was found to be identical to several outbreak isolates when
all four typing methods were considered, confirming the environmental
origin of the outbreak strains.
ERIC PCR typing and ribotyping identified 17 outbreak isolates as being
identical to one environmental strain, whereas PFGE almost completely
segregated outbreak strains from environmental and sporadic isolates.
This finding implies that these methods measure genetic events that
occur independently, and it makes interpretation of the relationships
between strains more complex. It is clear that no single method is
sufficient to unambiguously examine the genetic relatedness among the
strains. At the same time, there appears to be a tremendous genetic
heterogeneity in the endemic environmental V. parahaemolyticus population that is reflected in the large number
of types associated with human disease that were seen here.
V. parahaemolyticus is endemic to Canada's Pacific
Northwest region (12), though it cannot be isolated from
oysters during periods when water temperatures are cool. It seems
likely that, as noted for other geographical areas (9), this
organism may reside undetected in environmental reservoirs until
conditions are appropriate for its association with and growth in
oysters or other shellfish. While ribotyping and Fla locus RFLP
analysis indicated that at least some of the types found in outbreak
and environmental isolates in 1997 were also present in isolates from sporadic cases prior to 1997, no identity from year to year could be
found by the other two methods. Genetic changes resulting in variant
ribotypes or Fla locus RFLP patterns may occur more slowly than changes
producing different patterns in PFGE or ERIC PCR analyses, though the
biological processes that could generate such differences are unknown.
Karaolis et al. (10) have calculated a rate of one rRNA
restriction site change every 6 years in V. cholerae; in
this and other bacterial species, the stability of ribotype patterns
has allowed the development of standard ribotyping schemes (5,
24). On the other hand, genetic changes that alter PFGE patterns
can occur during the course of an outbreak (29). Ribotyping
may therefore be the most useful method for examining similarity in
isolates that are temporally or geographically separated.
Simpson's index of diversity has been adapted for use as a method for
deriving a numerical index of the discriminatory ability of single or
combined typing systems (8). The numbers derived are
presented as the discrimination index. For each typing method, the
discrimination index represents the percentage of occasions that two
strains sampled randomly from a population fall into different types.
In this investigation, ribotyping exhibited a discrimination index
slightly lower than that of PFGE or ERIC PCR but much higher than that
of Fla locus RFLP analysis (Table 2).
Despite the fact that ribotyping is slower and somewhat more
labor-intensive than the other three methods, the lower rate of change
of ribotype patterns, as discussed above, may be useful for evaluating
potential links between environmental strains and isolates from
infected patients. In this investigation, ribotyping was used in the
initial grouping of strains (Table 1). The resulting groups appeared to
have a logical coherence overall when other typing methods were
included, suggesting that ribotyping detected an underlying similarity
in the biology of these bacteria. Ribotyping may also be useful for
investigating changes in populations of environmental isolates over
longer periods of time. Isolates with ribotypes B and C were isolated
from patients in the years before the 1997 outbreak; these types were
also found among outbreak strains, suggesting that long-term carriage
in the environment may occur.
ERIC PCR has the best discriminatory value (Table 2), is rapid, and is
relatively easy to perform, making it the method of choice when a
single method is to be used for typing V. parahaemolyticus. However, the potentially rapid change in ERIC PCR types could also
obscure relationships between strains that otherwise might be evident
if other methods were used. ERIC typing in conjunction with ribotyping
(Table 2) has the best discrimination index and typing ability of all
the methods. This combination may be used to elucidate most of the
relevant genetic and epidemiological relationships among V. parahaemolyticus strains.
While PFGE had a high diversity index, evaluation of PFGE results was
complicated by the relatively large number of strains (14 of 60 [23%]) that were untypeable as a result of DNA degradation, despite precautions to limit the activity of endogenous proteases and
DNases. This difficulty was not encountered in previous work (33), though it may limit the usefulness of this method in
the future. Comparison of our PFGE data with those of Wong et al. (33) indicates that the two methods have similar
complexities in the size ranges separated. Though PFGE appeared to be
an excellent technique for differentiation of outbreak, environmental,
and sporadic strains in this study, the high proportion of untypeable isolates may limit the utility of this method in the future.
Fla locus RFLP analysis had the lowest discriminatory power of any
technique used in this study, though it was useful for confirmation of
types determined by other methods. The fact that fewer patterns were
generated by Fla locus RFLP analysis than by the other three techniques
and the conservation of these patterns from year to year suggest that
the fla genes within this locus are relatively conserved.
The choice of more variable genetic loci for RFLP analysis may provide
more detailed information about the genetic relationships among isolates.
In previous investigations of V. parahaemolyticus in the
Pacific Northwest of North America, locally acquired infections were found only when the organism could be detected in the local environment (11). V. parahaemolyticus strains have been
recovered from the environment in this area when water temperatures
were greater than 14°C and salinities were less than 13%. The
outbreak in 1997 occurred in a year of exceptionally warm ocean surface
temperatures and heavy rainfall associated with El Niño
conditions conducive to the growth of V. parahaemolyticus. Climatic changes associated with global
warming could make these conditions more common in the future,
increasing the risk of outbreaks associated with V. parahaemolyticus in this area. Ribotyping and ERIC PCR can be used
to further characterize V. parahaemolyticus populations in the environment. Investigations on whether the bacteria responsible for
British Columbia outbreaks are endemic to the Canadian west coast or
imported from other areas when environmental conditions are favorable
may aid risk analysis and prevention.
Counts of V. parahaemolyticus from the oysters obtained from
local harvesting areas during the 1997 British Columbia outbreak were
below the levels considered necessary to cause human illness (6). Though no deficiencies in oyster processing or
distribution were identified in initial investigations, improper
handling may have occurred at some point before consumption. In Taiwan,
outbreaks were most often associated with commercially prepared school
seafood lunches (23), suggesting that mishandling of seafood
ingredients may be a common factor. The molecular typing methods
described here could be used to aid trace-back investigations aimed at
determining the source of improperly handled foods and to create
opportunities for intervention or remediation. They should be useful
for the epidemiological investigation, intervention, and control of
human disease resulting from infection with V. parahaemolyticus.
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ACKNOWLEDGMENTS |
We are very grateful to Anna Pacagnella for providing isolates
from the 1997 outbreak of V. parahaemolyticus on Canada's
west coast. We extend our thanks to Rae Ashlyn Bosy and Charles Dendy for technical assistance, to David Woodward for collection and maintenance of the LCDC enteric reference database, from which sporadic
strains were obtained, and to Shaun Tyler for help with production of
the figures. Thanks are also due to hospital laboratory directors and
provincial laboratory directors for provision of isolates to the Bureau
of Microbiology for analysis.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory
Centre for Disease Control, Bureau of Microbiology, Health Canada,
Federal Laboratories, 1015 Arlington St., Winnipeg, Manitoba, Canada
R3E 3R2. Phone: (204) 789-2094. Fax: (204) 789-2097. E-mail:
Clifford_Clark{at}hc-sc.gc.ca.
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Journal of Clinical Microbiology, August 1999, p. 2473-2478, Vol. 37, No. 8
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