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Journal of Clinical Microbiology, August 1999, p. 2479-2482, Vol. 37, No. 8
Klinik für
Anästhesiologie1 and Department of
General and Environmental Hygiene,2 Hygiene
Institute, University of Tübingen, Tübingen, Germany
Received 5 January 1999/Returned for modification 19 March
1999/Accepted 20 April 1999
Critically ill patients often develop symptoms of sepsis and
therefore require microbiological tests for bacteremia that use conventional blood culture (BC) techniques. However, since these patients frequently receive early empirical antibiotic therapy before
diagnostic procedures are completed, examination by BC can return
false-negative results. We therefore hypothesized that PCR could
improve the rate of detection of microbial pathogens over that of BC.
To test this hypothesis, male Wistar rats were challenged intravenously
with 106 CFU of Escherichia coli. Blood was
then taken at several time points for detection of E. coli
by BC and by PCR with E. coli-specific primers derived from
the uidA gene, encoding Episodes of sepsis are common and
frequently life-threatening (12) complications, occurring in
44.8% of all critically ill patients (38). By definition
(4), sepsis is caused by microbial infection. However,
bacteremia, i.e., the presence of microorganisms in the bloodstream, is
diagnosed in only approximately 4 to 12% of all blood cultures (BC)
(26, 37). Escherichia coli is one of the most
common microorganisms isolated during hospital-acquired bacteremia in
intensive care patients (2, 21, 38). Several factors may
contribute to the low bacteremia detection rate. First, some species of
bacteria are difficult to culture (9), and some, such as
Mycobacterium spp. (5, 11, 15) or
Bartonella spp. (6), grow very slowly. Second,
bacteremia is often transient (29), meaning that the number
of viable microorganisms circulating in the blood decreases rapidly
after the onset of bacteremia due to phagocytic and other host defense
mechanisms. Finally, up to 65% of intensive care patients showing
symptoms of sepsis are already under antimicrobial treatment, thus
compromising the results of microbiological culture techniques (8,
25, 31, 37).
Since the emergence of bacteremia is associated with high mortality
rates and financial costs as well as a longer hospital stay (7,
27, 30), independent of the severity of the underlying disease
(3, 33), improved techniques for diagnosing bacteremia are
needed. We hypothesized that amplification of bacterial DNA by PCR
could overcome some of the problems associated with conventional BC
techniques. The potential of PCR technology to recover intracellular or
nongrowing microorganisms may be useful for diagnosing bacteremia. Although PCR has already been successfully applied in the detection of
fastidious microorganisms (22, 43) and, in particular, for
detecting bacteremia (23, 28, 44), a direct comparison of BC
techniques with PCR with respect to detection levels and time course
during bacteremia has yet to be carried out. Therefore, we assessed
these parameters for experimental bacteremia induced by E. coli in rats.
Rat model of bacteremia.
Male Wistar rats (350 to 500 g) were anesthesized by an initial intramuscular injection of ketamine
at 80 mg/kg of body weight (bw) and xylazine at 4 mg/kg of bw,
separately. Following this injection, both jugular veins were
cannulated with a 26-gauge cannula (Abbott, Wiesbaden, Germany) under
aseptic conditions. One cannula was used exclusively for the collection
of blood samples. Bacteremia was induced via the other cannula by
injection of 100 µl of a suspension of E. coli (ATCC
11229; 107 CFU/ml in 0.9% saline). E. coli was
chosen to represent nonfastidious pathogens for comparing the
sensitivities of BC and PCR because it is the most frequent
gram-negative pathogen causing bacteremia. We collected 2.2-ml blood
samples from 19 animals (group I) 5 min before bacterial challenge and
at 5, 15, 150, 180, and 210 min afterward. One blood sample from each
of 16 animals surviving 210 min was analyzed at each time point, with
the exception of time points 15, 150, and 210 min after bacterial
challenge, when analysis for E. coli was limited to 10, 15, and 13 rats, respectively, due to insufficient blood sample volumes.
One milliliter of whole blood was immediately inoculated into the BC
medium, and 1 ml was stored in EDTA tubes (Sarstedt, Nürmbrecht,
Germany) for PCR analysis; 100 µl of each sample was directly plated
in duplicate on sheep blood agar plates for the quantitation of bacteria.
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
PCR and Blood Culture for Detection of
Escherichia coli Bacteremia in Rats
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-glucuronidase. In further
experiments, cefotaxime (100 or 50 mg/kg of body weight) was
administered intravenously to rats 10 min after E. coli
challenge. Without this chemotherapy, the E. coli detection
rate decreased at 15 min and at 210 min after challenge from 100% to
62% of the animals with PCR and from 100% to 54% of the animals with
BC (P, >0.05). Chemotherapy decreased the E. coli detection rate at 25 min and at 55 min after challenge from
100% to 50% with PCR and from 100% to 0% with BC (P,
<0.05). Thus, at clinically relevant serum antibiotic levels, PCR
affords a significantly higher detection rate than BC in this rat
model. The results suggest that PCR could be a useful adjunct tool
supplementing conventional BC techniques in diagnosing bacteremia.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
PCR.
A 1-ml blood sample was divided into three aliquots of
300 µl each, which were transferred into sterile cups. Erythrocytes were lysed, and DNA was extracted according to the manufacturer's protocol with a Puregene DNA isolation kit (Biozym Diagnostik GmbH,
Hessisch Oldendorf, Germany) for whole blood. Two pairs of
oligonucleotide primers (one nested in the other) were derived from the
uidA gene of E. coli, encoding
-glucuronidase
specific for E. coli and Shigella spp.
Oligonucleotides P1 (5'-ATC ACC GTG GTG ACG CAT GTC GC-3') and P2
(5'-CAC CAC GAT GCC ATG TTC ATC TGC-3') were used in the first round of
PCR to amplify a 486-bp fragment (19). Oligonucleotides P3
(5'-TAT GAA CTG TGC GTC ACA GCC-3') and P4 (5'-CAT CAG CAC GTT ATC GAA
TCC-3') were used in the nested PCR for the amplified products from the
primary PCR to amplify a 186-bp fragment. For DNA amplification, 20.4 µl of reaction mixture was added to 29.6 µl of purified DNA. The
master mixture for the first round of PCR included the following: 10 mM
Tris-HCl, 50 mM KCl, 4.5 mM MgCl2, 600 µM each
deoxynucleoside triphosphate (dNTP) (Amersham Pharmacia Biotech,
Freiburg, Germany), 0.6 µM each primer, and 1 U of Taq DNA
polymerase (Amersham Pharmacia Biotech). Each reaction mixture was
overlaid with 1 or 2 drops of mineral oil. PCR amplifications were
performed with a Hybaid Omni Gene Temperature Cycler (MWG Biotech,
Ebersberg, Germany).
Analysis of cefotaxime levels in serum. Cefotaxime concentrations were measured by high-performance liquid chromatography with a UV detection system by the method reported by Dell et al. (10).
Statistical analysis. In order to detect any relevant difference between the PCR and the BC methods with respect to bacteremia detection as a function of time, we chose confidence intervals of 95% (P, <0.05). The minimum number of experiments needed to establish a difference of at least 30% between the two techniques for group I was calculated to be 20. A preliminary data analysis was scheduled after the completion of 12 experiments. For groups II and III, the confidence intervals were also 95%. The minimum number of experiments needed to reveal a difference of at least 80% between the two methods for groups II and III was 10 (1).
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RESULTS |
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For the detection of E. coli DNA in rat blood samples, PCR was performed with primers for the uidA gene of E. coli (19). PCR products from rat blood samples were verified to be specific for the target gene by Southern hybridization with a dUTP-labeled probe for uidA. No differences in the sizes of the PCR fragments from rat blood samples on agarose gels and the hybridization product on the Southern blot were observed (data not shown).
The sensitivity of PCR and BC for detecting E. coli in whole rat blood was 1 CFU/ml (data not shown). Before bacterial challenge, BC, the direct plating method, and PCR all returned negative results, indicating the absence of bacterial contamination during the animal experiment and during the PCR procedure (Fig. 1A). After bacterial challenge, the rates of detection of E. coli by the three methods decreased in a time-dependent manner (Fig. 1A). Even after 210 min, the E. coli PCR was positive for 61% of the 13 blood samples, whereas BC with the BACTEC system and the direct plating method were positive for 53 and 8% of the samples, respectively. No significant difference was observed between PCR and BC for the detection of E. coli at any of the examination times, but the rate of detection by the direct plating method was noticeably lower than that by either PCR or BC. Quantitatively, the direct plating method showed mean numbers of bacteria per milliliter of 27, 15, 0.0, 0.6, and 0.4 at 5, 15, 150, 180, and 210 min after E. coli challenge.
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As expected, the sensitivity of BC decreased significantly during experimental E. coli bacteremia in rats receiving clinically relevant doses of cefotaxime (Fig. 1B and C). In antibiotic treatment groups II and III, peak serum cefotaxime levels ranged between 121 and 137 mg/liter and between 94 and 86 mg/liter 15 min after injection, respectively (data not shown). When blood was taken 15 min after cefotaxime was administered intravenously, i.e., 25 min after bacterial challenge, only 10% of the samples were found positive by BC, whereas 100% of the samples were found positive by PCR (Fig. 1B and C). Data analysis established an 80% higher detection rate for the PCR method 25 min after bacterial challenge with both cefotaxime doses. At subsequent sampling times, the advantage of the PCR technique was also evident but did not reach the 80% range.
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DISCUSSION |
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BC is considered the "gold standard" for detecting microorganisms in the blood (29, 37). Nevertheless, many clinicians and microbiologists are concerned that BC for critically ill patients receiving antimicrobial chemotherapy could indicate lower rates of bacteremia than are actually present (8, 34). Antibiotic-binding BC devices, such as the BACTEC Plus F system, were developed in response to these concerns (13, 31, 41). Still, the rate of detection of bacteria in blood specimens has not changed substantially. The results of the present study strongly suggest that the clinicians' suspicions have a scientific basis. In an experimental rat model for E. coli bacteremia, a significantly higher rate of detection of E. coli was achieved with PCR technology than with BC when the animals were treated with clinically relevant levels of cefotaxime.
Interestingly, this difference in the detection rate between PCR and BC was not due to a higher sensitivity of our PCR than of BC. Regardless of whether PCR or BC is used, the ability to detect bacteremia depends on the presence of at least one microorganism in the blood being sampled. When tested in vitro, both methods detected as little as 1 CFU of E. coli per ml of blood, a volume which is normally used for diagnosing bacteremia, particularly in neonatal intensive care units (26). Furthermore, no significant difference in E. coli detection rates was observed between PCR and BC at any time point during experimental bacteremia in animals without antibiotic treatment. The sensitivity of our PCR was comparable to that previously reported for PCR used to detect bacteremia (17, 23, 28, 32, 35, 44). To our knowledge, however, minimal detection levels of BC systems in vitro have yet to be reported. Since the number of pathogens is less than 1 microorganism per ml of blood in 62% of all adult patients with E. coli bacteremia (37) and can be less than 0.04 organism per ml of blood (18), large blood volumes (20 to 30 ml) have to be used in order to avoid false-negative results. Thus, even though the PCR method was designed for smaller volumes from the very outset, it has to be adapted accordingly. This problem might be solved in the near future, because the rapidly increasing clinical use of PCR technology to detect pathogens which could not be isolated by conventional methods (5, 15, 24) has already prompted the development of a variety of different DNA isolation kits.
Our finding that BC is much less efficient than PCR in detecting bacteremia during antimicrobial treatment is most probably due to the killing of E. coli by cefotaxime; killed bacteria are not detectable by BC, while PCR detects bacterial DNA independently of viability.
Similarly, in a rabbit model of endocarditis, recovery rates for E. coli and other bacteria were reduced during antimicrobial treatment (25). In addition, the higher sensitivity of PCR technology than of conventional BC techniques is due to the fact that intracellular or phagocytosed microorganisms are also detectable by PCR.
In order to quantify bacterial numbers in E. coli-challenged rat blood, the direct plating method was used. Direct plating corroborated the results obtained by PCR and BC with respect to the rapid clearance of E. coli from the bloodstream. The lower sensitivity of the direct plating method compared with PCR or BC may be due to its smaller sample volume and a lack of dilution of bacterial growth-inhibiting factors in the blood, which are known to influence bacterial recovery rates in BC (29, 37). Thus, since direct plating is clearly less sensitive than BC in detecting E. coli in blood samples, BC is a better standard than direct plating for the evaluation of PCR technology (20).
From the clinical point of view, it is vital to develop improved techniques for diagnosing bacteremia, because the emergence of bacteremia is of substantial prognostic and therapeutic importance (2, 16, 39). The occurrence of secondary bacteremia (14) is a signal that the host's defenses have failed to contain an infection at its primary site or that the physician has failed to control the infectious process (40, 42). Thus, the detection of bacteria in the patient's blood, regardless of whether they are still viable or have been killed by antibiotics, implies that the treatment regimen might be insufficient and has to be augmented.
Extracellular bacterial DNA has been considered to be immunologically inert in mammals. However, it was shown recently that bacterial DNA has substantial immunostimulatory properties comparable to those of endotoxin (36) and that its presence can cause sepsis-like symptoms in mice (36). Thus, methods for detecting DNA might improve our understanding of the frequently life-threatening systemic inflammatory response syndrome (4) in intensive care patients. In summary, our results suggest that PCR could prove to be a useful adjunct tool supplementing conventional BC techniques in diagnosing bacteremia.
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ACKNOWLEDGMENTS |
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We are indebted to W. Hoffmann and T. Gottwald of the University of Tübingen for technical assistance concerning the rat model; K.-J. Plaueln of Hoechst-Marrion-Roussel, Frankfurt, Germany, for the kind gift of cefotaxime; M. Ulrich, C. Goerke, P. Krüger, and C. Wolz for discussions concerning the establishment of PCR technology; C. Meisner for assistance in the statistical evaluation of our data; D. Isaacman for reading the manuscript; and D. Blaurock for language corrections in the manuscript.
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FOOTNOTES |
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* Corresponding author. Mailing address: Klinik für Anästhesiologie, University of Tübingen, Hoppe-Seyler-Str. 3, D-72076 Tübingen, Germany. Phone: 0049 7071 2986622. Fax: 0049 7071 295533. E-mail: gerd.doering{at}uni-tuebingen.de.
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