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Journal of Clinical Microbiology, August 1999, p. 2667-2673, Vol. 37, No. 8
0095-1137/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Detection of Staphylococcus aureus and
Staphylococcus epidermidis in Clinical Samples by 16S
rRNA-Directed In Situ Hybridization
Vanessa
Krimmer,1
Hilde
Merkert,1
Christof
von Eiff,2
Matthias
Frosch,3
Jochen
Eulert,4
Jochen F.
Löhr,5
Jörg
Hacker,1 and
Wilma
Ziebuhr1,*
Institut für Molekulare
Infektionsbiologie1 and Institüt
für Hygiene und Mikrobiologie,3
Universität Würzburg, and König-Ludwig-Haus,
Orthopädische Klinik,4 Würzburg, and
Institut für Medizinische Mikrobiologie,
Universität Münster, Münster,2
Germany, and Schultheißklinik, Orthopädische Chirurgie,
Zürich, Switzerland5
Received 17 November 1998/Returned for modification 1 February
1999/Accepted 29 March 1999
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ABSTRACT |
Staphylococcus epidermidis and Staphylococcus
aureus are the most common causes of medical device-associated
infections, including septicemic loosenings of orthopedic implants.
Frequently, the microbiological diagnosis of these infections remains
ambiguous, since at least some staphylococci have the capacity to
reduce their growth rate considerably. These strains exhibit a
small-colony phenotype, and often they are not detectable by
conventional microbiological techniques. Moreover, clinical isolates of
S. aureus and S. epidermidis adhere to polymer
and metal surfaces by the generation of thick, multilayered biofilms
consisting of bacteria and extracellular polysaccharides. This study
reports improved detection and identification of S. aureus
and S. epidermidis by an in situ hybridization method with
fluorescence-labeled oligonucleotide probes specific for staphylococcal
16S rRNA. The technique has proven to be suitable for the in situ
detection of staphylococci, which is illustrated by the identification
of S. epidermidis in a connective tissue sample obtained
from a patient with septicemic loosening of a hip arthroplasty. We also
show that this technique allows the detection of intracellularly
persisting bacteria, including small-colony variants of S. aureus, and the differentiation of S. epidermidis from other clinically relevant staphylococci even when they are embedded in biofilms. These results suggest that the 16S rRNA in situ
hybridization technique could represent a powerful diagnostic tool for
the detection and differentiation of many other fastidious microorganisms.
 |
INTRODUCTION |
Staphylococci are the most important
pathogens in polymer-associated infections. They cause a wide range of
polymer-related infections as well as infections associated with
prosthetic joints and other implanted biomaterials (13, 21,
30). Although staphylococci are easy to identify by classical
microbiological techniques, in some cases the correct species diagnosis
is difficult. This might be due to the fact that at least some clinical
staphylococcal isolates can differ in a wide range of phenotypic
properties, leading to misinterpretations of biochemical tests
(10, 11, 23, 29). In Staphylococcus aureus, the
appearance of small-colony variants (SCVs) has been associated with
recurrent and persistent infections (29). SCVs are
characterized by a reduced growth rate, diminished exoprotein
production, and increased resistance to aminoglycosides. Moreover,
these bacteria were found to persist intracellularly. It was shown that
this phenotype is due to defects in the hemin and menadione metabolism
(5, 29, 33). The microbiological identification of SCVs is
often complicated by the reduced growth rate and altered cell wall and
exoprotein production. In S. epidermidis, variation of
phenotypic features, including variation of enzyme expression, has also
been described (8-11, 27, 35).
In the pathogenesis of foreign body-related infections caused by
S. epidermidis, adhesion of the bacteria to the biomaterials is an essential step (12, 28). Scanning electron microscope investigations of polymer devices revealed that multilayered cell clusters of staphylococci are embedded in a thick matrix of slime substance (14, 28). This process is suggested to occur in two stages: (i) a rapid initial attachment of the bacteria to the
polymer surfaces is followed by (ii) a cell proliferation process and
the production of an extracellular polysaccharide substance which
mediates the intercellular adherence of the bacteria and the
accumulation of a multilayered biofilm (17-19, 24, 25, 31).
The production of this substance, termed the polysaccharide intercellular adhesin, was found to be associated with the presence and
expression of the ica operon, which is widespread in
clinical S. epidermidis isolates (19, 35).
This study was aimed at the development of an improved identification
method for clinically important staphylococcal species by using a 16S
rRNA-based oligonucleotide in situ hybridization technique which also
detects biofilm-forming staphylococci and small-colony phenotypes in
tissue samples. The study demonstrates the potential of the technique
for the detection of other fastidious microorganisms which often remain
unidentified by classical microbiological approaches.
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MATERIALS AND METHODS |
Bacterial strains.
The bacterial strains used are listed in
Table 1.
16S rRNA-targeted DNA probes.
DNA oligonucleotide probes
were synthesized and labeled with Cy3 or fluorescein by MWG Biotech
GmbH, Ebersberg, Germany. The probe SEP-1, which is specific for
S. epidermidis, S. saccharolyticus, S. caprae, and S. capitis, was described by
Zakrzewska-Czerwinska et al. (34). The DNA probe EUB338,
which is specific for all eubacteria, was reported by Amann et al.
(2). The S. aureus-specific oligonucleotide probe
SA-P1 was described by Bentley et al. (7). All
oligonucleotide sequences are shown in Fig.
1.

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FIG. 1.
(A) Sequence alignment of the region in the 16S rRNA
genes of staphylococci corresponding to nucleotides 1014 to 1043 of the
E. coli 16S rRNA. The target region of the oligonucleotide
probe SEP-1 is boxed. Nucleotides different from those in the S. epidermidis sequence are in boldface. (B) Sequence alignment of
the region in the 16S rRNA genes of staphylococci corresponding to
nucleotides 66 to 95 of the E. coli 16S rRNA. The target
region of the oligonucleotide SA-P1 is boxed. Nucleotides different
from those in the S. aureus sequence are in boldface.
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RNA preparation for 16S rRNA hybridization.
Overnight
cultures were diluted 1:40 in 10 ml of brain heart infusion broth
(Difco) and grown at 37°C in a shaking water bath to the mid-log
phase. Bacterial cells were harvested by centrifugation for 5 min at
4,000 rpm. The pellet was resuspended in 500 µl of protoplast buffer
containing 15 mM Tris-HCl (pH 7.5), 0.45 M sucrose, 8 mM EDTA (pH 8.0),
and 100 µl of lysostaphin (500-µg/ml stock) (Sigma, Deisenhofen,
Germany). The mixture was chilled for 20 minutes on ice and then
incubated for 5 to 20 min at 37°C. Following the addition of 500 µl
of lysis buffer (30 mM Tris-HCl [pH 7.5], 100 mM NaCl, 5 mM EDTA [pH
8.0], 1% sodium dodecyl sulfate [SDS], 100 µg of proteinase K per
ml), the suspension was twice frozen at
80°C and thawed at room
temperature. Following the last thawing, the suspension was incubated
for 1 h at 37°C, and phenolchloroform-isoamyl alcohol extraction
was performed five times. The RNA was precipitated with 5 M sodium
chloride and 2 volumes of chilled 96% ethanol. Following
centrifugation, the RNA pellet was rinsed with 80% ethanol and air dried.
DIG labeling of oligonucleotides for dot blot hybridization.
For digoxigenin (DIG) labeling, the DIG Oligonucleotide 3'-End Labeling
Kit (no. 1362372; Boehringer, Mannheim, Germany) was used. The labeling
procedure was performed according to the instructions of the manufacturer.
Dot blot hybridization with DIG-labeled oligonucleotides.
Ten micrograms of RNA was blotted onto a nylon membrane (PALL Biodyne B
membrane) by using a dot blot apparatus (Schleicher & Schuell SRC 96 D
Minifold I Dot Blotter) and UV fixed. For the hybridization procedure
high-SDS buffer containing 50% formamide, 5× SSC (1× SSC is 0.15 M
NaCl plus 0.015 M sodium citrate), 7% SDS, 50 mM sodium phosphate (pH
7.0), 2% blocking reagent (Boehringer), and 0.1%
N-lauroylsarcosine was used. All buffers and solutions were
used according to the instructions of the supplier. The hybridization temperature was 42°C. Washing of the membrane was performed by using
a high-stringency washing buffer containing 0.1% SDS and 0.1× SSC at
50°C. Detection of the DIG-labeled oligonucleotide was performed by
using alkaline phosphatase-labeled anti-DIG antibody Fab fragments
(Boehringer) and the chemiluminescent substrate CSPD (Boehringer) by
the procedure recommended by the supplier. The membrane was exposed to
Hyperfilm-ECL (Amersham) for 1 to 60 min.
Bacterial cell fixation and permeabilization for whole-cell
hybridization.
Lysis of the bacterial cells was performed as
described previously by Matsuhisa et al. (26) with some
modifications. Briefly, bacteria were grown to exponential phase and
harvested by centrifugation. The pellet was resuspended and washed in
phosphate-buffered saline (PBS) (130 mM sodium chloride, 10 mM sodium
phosphate buffer, pH 7.4). Cells were fixed in 4%
paraformaldehyde-PBS for 1 h, fixed again in 70% ethanol for 30 min, and stored in a 1:1 mixture of ethanol and PBS as described
previously (2). For the hybridization, 1 µl of bacterial
cells was dropped onto a microscope slide and air dried. For
permeabilization, the cells were treated with an enzyme mix (750 µg
of lysostaphin per ml, 5 mg of lysozyme per ml, 50 mM sodium phosphate,
0.05% saponin) for 1 h at 37°C.
Whole-cell hybridization.
Fifteen microliters of
hybridization solution (0.9 M NaCl, 20 mM Tris-HCl [pH 7.5], 0.001%
SDS, 43% formamide, 50 ng of Cy3- or fluorescein-labeled probe) was
applied to microscope slides and incubated for 3 h at 43°C in an
isotonically equilibrated humid chamber (6). Removal of the
unbound probe and washing were performed at 43°C as described by
Amann et al. (3). The slides were rinsed briefly with
distilled water, air dried, and mounted with Citifluor solution
(Citifluor Ltd., London, United Kingdom). Fluorescence was detected by
using an Axioplan microscope (Zeiss, Oberkochen, Germany) equipped with
an epifluorescence unit.
Detection of S. epidermidis in biofilms.
The
biofilm-producing strains S. epidermidis RP62A and S. aureus 453 were used. Bacterial strains were grown overnight in chamber slides (Lab-Tek II chamberslide no. 154534; Nalge Nunc International, Naperville, Ill.) in Tripticase soy broth at 37°C. After decanting, the supernatant slides were washed three times with
PBS to remove all nonadhering bacteria. Bacterial biofilms were fixed
by air drying and treated for hybridization as described above for the
whole-cell hybridization assay.
Detection of an S. aureus hemB mutant in a human
endothelial cell line by in situ hybridization.
For the
intracellular persistence assay, the following bacterial strains were
used: S. aureus 8325/4 (noninvasive), an invasive S. aureus 8325/4 hemB mutant (33),
Salmonella typhimurium C17 (invasive positive control)
(15), and Escherichia coli HB101 (noninvasive
negative control).
The human endothelial cell line E.Ahy 926 was grown to a confluent
monolayer in RPMI medium with 10% fetal calf serum and
2 mM glutamine
in chamber slides (Lab-Tek II chamberslide no.
154534). Washed bacteria
were adjusted to nearly equal numbers
for each strain and added to the
washed monolayers. The infected
monolayers were incubated for 3.5 h (2.5 h for the
hemB mutant)
at 37°C in 5%
CO
2 to allow adhesion and invasion of the bacteria.
The
monolayers were washed three times with PBS. In order to remove
all
extracellular bacteria, 1 ml of medium containing 10 µg of
lysostaphin (Sigma) per ml was added in case of the
S. aureus strains. Extracellular
S. typhimurium and
E. coli were removed
by adding 100 µg of gentamicin/ml.
Incubation in both cases was
for 30 min at 37°C. The monolayers were
washed three times with
PBS and fixed for 20 min in 4% freshly
prepared paraformaldehyde
at room temperature. Dehydration was
performed stepwise for 5
min in 50, 70, and 100% ethanol. For the
detection by the fluorescent
oligonucleotide probes, the fixed and
dehydrated monolayers were
treated as described above for the
permeabilization for whole-cell
hybridization. The conditions for the
in situ hybridization were
exactly the same as for the whole-cell
hybridization
assay.
In situ hybridization of paraffin-embedded tissue samples.
To remove paraffin, the tissue sections were treated twice with
Rotihistol (Roth, Karlsruhe, Germany) for 10 min and then with
Rotihistol-ethanol (1:1) for 10 min. For the detection by the
fluorescent oligonucleotide probes, the tissue sections were treated as
described above for the permeabilization for whole-cell hybridization.
The conditions for the in situ hybridization were exactly the same as
for the whole-cell hybridization assay.
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RESULTS AND DISCUSSION |
Specificities of the oligonucleotide probes.
The detection and
identification of microorganisms based on their 16S rRNAs have many
advantages. First, each bacterial cell contains multiple copies of the
16S rRNA in its ribosomes. Hence, the technique is sensitive enough to
detect single bacterial cells. Second, 16S rRNA genes are highly
conserved throughout bacterial evolution. They consist of regions which
are common to all eubacteria and other regions which are extremely
species specific. By using the appropriate gene probes, it is possible
either to detect any bacterial pathogen or, when highly specific probes
are used, to identify single bacterial species. Also, this technique
allows for the identification of microorganisms independently of
bacterial growth rates and metabolic activities. This is a special
advantage for the detection of dormant and metabolically inactive
bacteria, since the number of ribosomes is not significantly affected
in such organisms. This article reports the development of improved diagnostic tools for both S. aureus and S. epidermidis, which are the most common causative agents of
infections in orthopedic implants (30).
For the detection of
S. aureus and
S. epidermidis, two oligonucleotide probes which are directed against
specific regions
in the 16S rRNA were used. The nucleotide sequence of
the
S. epidermidis-specific
probe SEP-1 was described by
Zakrzewska-Czerwinska et al. (
34).
For the
S. aureus-specific probe SA-P1, the sequence published
by Bentley et
al. (
7) was used. Figure
1 shows an alignment
of the 16S
rRNA genes of different
Staphylococcus species and
the
positions of the SEP-1 and SA-P1
probes.
In a first set of experiments, the specificities of the gene probes
used in this study were analyzed by dot blot hybridizations
(Fig.
2 and
3). To this end, RNAs of (i) different staphylococcal
species, (ii) a
range of nonrelated bacteria, and (iii)
Candida albicans
were isolated, dotted onto nylon membranes, and hybridized
with the
appropriate DIG-labeled gene probes. In a control experiment,
the
stability and the amount of the filter-immobilized RNA were
determined
by using the oligonucleotide probe EUB338 (
2), which
binds
to the 16S rRNAs of all eubacteria (Fig.
3b) but not to
the rRNA of
C. albicans (Fig.
2b).

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FIG. 2.
RNA dot blot hybridization with S. epidermidis 163 (1), S. capitis DSM 20326 (2), S. warneri DSM 20316 (3),
S. aureus 8325/4 (4), S. saprophyticus
DSM 20229 (5), and C. albicans ATCC 44808 (6). The oligonucleotide probes were labeled with DIG, and
hybridizations were performed as described in Materials and Methods at
42°C in a buffer containing 50% formamide. (a) Strain numbers; (b)
hybridization with probe EUB338; (c) hybridization with probe SEP-1;
(d) hybridization with probe SA-P1.
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Figure
1A shows that the sequence of the SEP-1 probe differs from those
of most staphylococcal species by more than two nucleotides.
In the
cases of
S. capitis and
S. warneri, however, the
SEP-1
probe contains only one and two nucleotide mismatches,
respectively.
As expected, the
S. epidermidis-specific
probe, SEP-1, hybridized
to the RNAs from the
S. epidermidis
isolates but not to RNAs isolated
from all of the other bacterial
species analyzed in this experiment
(Fig.
3c). The data also show that it was not
possible to distinguish
between
S. epidermidis and the very
closely related species
S. capitis (Fig.
2c). Since the
S. epidermidis-specific gene probe
contains only one base
exchange in comparison with the corresponding
S. capitis 16S
rRNA region,
S. capitis strains were misidentified
as
S. epidermidis. This cross-hybridization of the SEP-1 gene
probe with
S. capitis,
S. saccharolyticus, and
S. caprae has also
been described recently by
Zakrzewska-Czerwinska et al. (
34).
S. capitis,
S. saccharolyticus, and
S. caprae have been shown
to have a certain pathogenic potential (e.g.,
S. caprae can
be
associated with bone and joint infections in humans [
20,
32]),
but clearly, they are rarely isolated human pathogens
(
1,
22),
whereas the vast majority of this type of
infections are caused
by
S. epidermidis. Therefore, it is
unlikely that the cross-reactivity
of the SEP-1 probe will pose a real
problem, particularly as the
treatment strategy would be the same as
that for an
S. epidermidis infection. The
S. aureus-specific oligonucleotide probe SA-P1
revealed positive
signals only with the RNA isolated from
S. aureus and not
with that from any other species tested in this study
(Fig.
2d). Thus,
both oligonucleotide probes proved to be suitable
for the
identification of
S. aureus and a group of four
coagulase-negative
staphylococci, including
S. epidermidis,
and for their discrimination
from a range of other bacterial species.
However, it should be
noted that an extensive study involving a broad
range of related
and nonrelated bacterial species is required to
completely exclude
possible unspecific reactions of the oligonucleotide
probes described
here.

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FIG. 3.
RNA dot blot hybridizations with bacterial strains
listed in Table 1. The oligonucleotide probes were labeled with DIG,
and hybridizations were performed as described in Materials and Methods
at 42°C in a buffer containing 50% formamide. (a) Strain numbers,
corresponding to the first 25 strains, respectively, in Table 1; (b)
hybridization with probe EUB338; (c) hybridization with probe SEP-1.
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Fluorescent hybridization of whole bacterial cells.
The goal
of the experiments described next was to establish a 16S rRNA-based in
situ hybridization method that would allow for an improved diagnosis of
staphylococcal infections. First, it was important to show that
staphylococcal cells can be sufficiently permeabilized to allow for
intracellular hybridization with fluorescence-labeled oligonucleotide
probes. Next, we attempted to answer the question of whether
staphylococci can be reliably differentiated by this technique. To
address these issues, different staphylococcal species were analyzed in
a whole-cell hybridization assay. The microorganisms were grown in
liquid cultures to the exponential phase, harvested, and treated as
described in Materials and Methods. For the detection of S. aureus and S. epidermidis, the Cy3-labeled
oligonucleotide probes SA-P1 and SEP-1 were used. The FLUOS-labeled
probe EUB338 was used as a positive control specific for all
eubacterial species. The results obtained by fluorescence microscopy
can be summarized as follows: (i) hybridization with the positive
control (EUB338) revealed that all eubacterial cells are visualized by
this technique (Fig. 4b, e, h, k, and n),
(ii) the SEP-1 probe specifically stained all S. epidermidis
and S. capitis cells (Fig. 4a and d), and (iii) with SEP-1,
no specific fluorescence signals were obtained for S. warneri (Fig. 4g) and S. aureus, S. haemolyticus, and S. saprophyticus (data not shown). We
concluded from these data that the two-nucleotide mismatch of the SEP-1
probe with the S. warneri target sequence appeared to be
sufficient for a reliable discrimination between S. epidermidis and other staphylococcal species (with the exception of S. capitis). Finally, the S. aureus-specific
probe SA-P1 was found to specifically label S. aureus cells,
whereas S. epidermidis and other staphylococci remained
unstained (Fig. 4j and m).

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FIG. 4.
Epifluorescence micrographs of S. epidermidis
RP62A (a to c), S. capitis DSM 20326 (d to f), S. warneri DSM 20316 (g to i), S. aureus 8325/4 (j to l),
and S. epidermidis RP62A (m to o) under high-stringency
conditions (43°C, 43% formamide). The SEP-1 probe (a, d, and g), the
SA-P1 probe (j and m) the EUB338 probe (b, e, h, k, and n), or phase
contrast (c, f, i, l, and o) was used.
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Obviously, a gene probe capable of identifying all staphylococcal
species at the genus level is highly desirable. In the absence
of such
a reagent, we are restricted to the identification of
bacterial
infections with the eubacterial gene probe EUB338 and
the subsequent
discrimination of
S. aureus and
S. epidermidis with specific gene probes. There is a clear need for the development
of
additional gene probes which could be used in combination for
the
identification of any bacterial
pathogen.
Detection of S. epidermidis in bacterial biofilms.
The adherence and formation of biofilms on smooth surfaces is an
essential step in the pathogenesis of staphylococcal infections. Therefore, we decided to extend the approach described above to address
the question of whether it is possible to identify staphylococci in
biofilms. In these experiments, the biofilm-positive strain S. epidermidis RP62A, which produces the polysaccharide intercellular adhesin, was used. In parallel, an S. aureus clinical
isolate which had been found to form biofilms on polystyrene surfaces was analyzed and served as a control. The fluorescent hybridization technique with the SEP-1 probe proved to be suitable for the detection of S. epidermidis cells, even when they were embedded in a
thick matrix of extracellular polysaccharides (Fig.
5a). In the control experiment with the
biofilm-forming S. aureus isolate, no specific staining was
obtained. This finding confirms the specificity of SEP-1 for S. epidermidis and also rules out the possibility that the positive
signal was generated by an unspecific binding to extracellular proteins
or polysaccharides. We concluded from these data that SEP-1 is an
appropriate diagnostic tool for the detection and differentiation of
S. epidermidis isolates even when they form biofilms.

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FIG. 5.
Detection of staphylococci in biofilms. Phase-contrast
(c and f) and epifluorescence (a to e) micrographs of S. epidermidis RP62A (a, b, and c) and S. aureus 8325/4
(d, e, and f) in biofilms following hybridization with the Cy3-labeled
probe SEP-1 (a and d) and the FLUOS-labeled probe EUB338 (b and e)
under high-stringency conditions (43°C, 43% formamide) are shown.
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Detection of an S. aureus SCV phenotype by the
fluorescent hybridization technique.
The abilities of clinically
relevant staphylococci both to generate biofilms and to vary their
phenotypic properties (e.g., growth rate, antibiotic susceptibility,
and adherence properties) have been suggested to contribute
considerably to staphylococcal virulence. The occurrence of S. aureus SCVs has been associated with recurrent and persistent
infections, especially in patients with osteomyelitis and in patients
with orthopedic implants (29). SCVs are characterized by a
reduced growth rate, an increased resistance to aminoglycosides, and
intracellular persistence. In order to investigate whether SCVs can be
detected by the direct hybridization technique, we did an invasion
assay by using a site-directed S. aureus hemB mutant which
exhibits all properties of a small-colony phenotype, including the
invasion of endothelial cells (33). The human endothelial
cell line E.Ahy 926 was incubated with the S. aureus hemB
mutant as described in Materials and Methods. Thereafter, the fixed
cells were hybridized with the oligonucleotide probes EUB338 and SA-P1.
Fluorescence microscopy analysis revealed that the S. aureus
SCVs can be detected by both the EUB338 and SA-P1 gene probes, even
when the bacteria occur intracellularly (Fig. 6a and b). An S. typhimurium
isolate which is invasive in epithelial cells was used as a positive
control for the invasion assay (data not shown), and the noninvasive
strain E. coli HB101 was used as a negative control (Fig.
6c). We conclude from this experiment that the 16S rRNA technique is
indeed suitable for the detection of metabolically inactive bacteria
even when they occur intracellularly. Therefore, the method gives the
opportunity to improve the diagnosis of infections caused by
staphylococcal SCVs.

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FIG. 6.
Detection of intracellularly persisting bacterial cells
of an S. aureus hemB mutant in the human endothelial cell
line E.Ahy 926. (a) Hybridization with the FLUOS-labeled probe EUB338.
(b) Hybridization with the Cy3-labeled probe SA-P1. (c) Negative
control with the noninvasive strain E. coli HB101 probed
with EUB338.
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In situ hybridization of a tissue section sample from a patient
with hip arthroplasty loosening.
A further important problem in
the diagnosis of orthopedic staphylococcal infections is the evaluation
of the microbiological results, especially when coagulase-negative
staphylococci have been identified. Often it is difficult to decide
whether an isolate represents the causative agent of an infection or an
unspecific contamination from the skin or the environment. One possible
way to overcome these problems is to use diagnostic tools which allow the direct detection and differentiation of the bacteria in situ (e.g.,
in tissues, smears, or biopsy material, etc.).
To conclude our study, we addressed the question of whether the 16S
rRNA hybridization technique is also appropriate for the
direct
detection of staphylococci in tissues. We therefore used
the method in
a clinical case of hip arthroplasty loosening that
was thought to be
caused by
S. epidermidis.
In a 65-year old female suffering from progressive loosening of an
artificial hip arthroplasty, a replacement of the implant
had to be
performed. Since the clinical course was typical for
an infection of
the implant, specimens for microbiological investigations
were obtained
during surgery. Initially, microbiological cultivation
failed to
identify any causative agent. However, after prolonged
cultivation (1 week) in Trypticase soy broth,
S. epidermidis was
identified
in several specimens of the material. The
S. epidermidis isolate was found to be resistant to oxacillin, gentamicin, and
erythromycin. To decide whether the isolate represented the cause
of
the infection or a contamination, the 16S rRNA hybridization
technique
was used again. A tissue sample which had been obtained
during the
joint replacement surgery was fixed with paraformaldehyde
and embedded
in paraffin for thin-layer dissection. For the in
situ hybridization
with the fluorescence-labeled oligonucleotide
probes, the tissue
sections were treated as described in Materials
and Methods. Both the
EUB338 and SEP-1 probes were used in this
experiment. In all tissue
sections analyzed, several foci which
gave signals with both
oligonucleotide probes were identified.
The foci were localized in the
vicinity of blood vessels and resembled
bacterial structures in size
and shape. To ensure that the observed
structures indeed represented
bacteria, any unspecific reaction
was excluded by probing another
section with the
S. epidermidis-specific
SEP-1 probe and a
Legionella pneumophila-specific probe, LEGPNE1
(
16), as a negative control. No specific signal of the foci
was obtained with the
Legionella-specific probe in this
control
experiment (Fig.
7B). In
contrast, the structures were strongly
stained with the
S. epidermidis-specific SEP-1 probe (Fig.
7A).
In a prospective study
using a mathematical model, it was shown
recently that the
investigation of at least three independent
specimens gives results
that are highly predictive of an infection
(
4). Although we
had only one specimen at our disposal, we
feel that the high number of
the
S. epidermidis-specific bacterial
foci in the sample and
their localization, combined with the microbiological
cultivation
results from several independent specimens, strongly
suggest an
involvement of an
S. epidermidis infection in the loosening
of the implant. The direct detection and identification of
S. epidermidis in the infected tissue by this method support the
clinical diagnosis that the loosening of the arthroplasty was
caused by
an infection.

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FIG. 7.
In situ hybridization of connective tissue from a
patient suffering from progressive loosening of an artificial hip
arthroplasty with the S. epidermidis specific gene probe
SEP-1 (A) and the Legionella-specific gene probe LEGPNE1
(16) as a negative control (B). Two different sectors of a
sample that was obtained during replacement surgery are shown.
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In summary, this initial report shows that the in situ hybridization
technique with 16S rRNA-directed oligonucleotide probes
is suitable for
the diagnosis of staphylococcal infections associated
with orthopedic
implants. It should be noted that, for several
reasons, this method
cannot be expected to replace conventional
culture techniques. In those
cases, however, where the standard
cultivation fails to identify a
causative infectious agent, the
16S rRNA in situ hybridization could
represent a useful additional
diagnostic tool. We have applied this
method to the diagnosis
of one clinical case of hip arthroplasty
loosening. However, in
order to explore its general usefulness in the
diagnostic laboratory
(in comparison with currently available culture
techniques), a
broad clinical study would be extremely
desirable.
Encouraged by the results of this study, we believe that the method can
be extended to allow for the identification of a wide
range of other
fastidious microorganisms (e.g.,
Legionella,
Burkholderia,
or streptococci). For this purpose,
however, the method has to
be optimized to make it practicable for use
in the routine microbiological
laboratory.
 |
ACKNOWLEDGMENTS |
We thank Rudolf I. Amann of the Max-Planck-Institut für
Marine Biologie, Bremen, Germany, for helpful discussions and technical support with whole-cell hybridizations, and we thank Bernd Schmaußer of the Institut für Pathologie, Universität Würzburg,
Würzburg, Germany, for carrying out the sectioning of
paraffin-embedded tissue.
This work was supported by a grant from the BMBF (no. 01K19608), by the
Graduiertenkolleg Infektiologie, and by the Fond der Chemischen Industrie.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Molekulare Infektionsbiologie, Röntgenring 11, 97070 Würzburg, Germany. Phone: 49 931-312154. Fax: 49 931-312578. E-mail: w.ziebuhr{at}mail.uni-wuerzburg.de.
 |
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Journal of Clinical Microbiology, August 1999, p. 2667-2673, Vol. 37, No. 8
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