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Journal of Clinical Microbiology, January 2000, p. 362-368, Vol. 38, No. 1
0095-1137/0/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
A Polymorphic Multigene Family Encoding an
Immunodominant Protein from Babesia microti
M. J.
Homer,1
E. S.
Bruinsma,1
M. J.
Lodes,2
M. H.
Moro,1
S.
Telford III,3
P. J.
Krause,4
L. D.
Reynolds,2
R.
Mohamath,2
D. R.
Benson,2
R. L.
Houghton,2
S. G.
Reed,2 and
D. H.
Persing1,*
Department of Laboratory Medicine and
Pathology, Mayo Clinic, Rochester, Minnesota
559051; Corixa Corporation, Seattle,
Washington 981042; Department of
Tropical Public Health, Harvard School of Public Health, Boston,
Massachusetts 021153; and Department
of Pediatrics, Connecticut Children's Medical Center, Hartford,
Connecticut 061064
Received 16 July 1999/Accepted 25 October 1999
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ABSTRACT |
Human babesiosis in the United States is caused predominantly by
Babesia microti, a tick-transmitted blood parasite.
Improved testing methods for the detection of infection with this
parasite are needed, since asymptomatic B. microti
infection represents a potential threat to the blood supply in areas
where B. microti is endemic. We performed immunoscreening
of an expression library of genomic DNA from a human isolate of
B. microti (strain MN1). Among 17 unique immunoreactive
clones, we identified 9 which represent a related family of genes with
little sequence homology to other known sequences but with an
architecture resembling that of several surface proteins of
Plasmodium. Within this family, a tandem array of a
degenerate six-amino-acid repeat (SEAGGP, SEAGWP, SGTGWP, SGTVGP) was
found in various lengths between relatively well conserved segments at
the N and C termini. In order to examine within-clone variation, we
developed a PCR protocol for direct recovery of a specific
bmn1-6 homologue directly from 30 human blood isolates, 4 corresponding hamster isolates, and 5 geographically corresponding Peromyscus leucopus (white-footed mouse) isolates. Isolates
from the hamsters had the same sequences as those found in the
corresponding human blood, suggesting that genetic variation of
bmn1-6 does not occur during passage. However, clones from
different patients were often substantially different from each other
with regard to the number and location of the degenerate repeats within
the bmn1-6 homologue. Moreover, we found that strains that
were closely related geographically were also closely related at the
sequence level; nine patients, all from Nantucket Island, Mass.,
harbored clones that were indistinguishable from each other but that
were distinct from those found in other northeastern or upper
midwestern strains. We conclude that considerable genetic and antigenic
diversity exists among isolates of B. microti from the
United States and that geographic clustering of subtypes may exist. The
nature of the bmn1-6 gene family suggests a mechanism of
antigenic variation in B. microti that may occur by
recombination, differential expression, or a combination of both mechanisms.
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INTRODUCTION |
Infection with Babesia
represents one of the most common parasitic infections worldwide among
wild and domestic animals and is second in prevalence only to
trypanosomal infections. Members of the genus Babesia, along
with their relatives the members of the family Theileridae, are called
piroplasms because of their pear-shaped forms found in infected
erythrocytes. The near ubiquitous distribution of Babesia
spp. in nature has led to the identification of nearly 100 species,
some of which are zoonotic. In general, Babesia spp. are
minimally pathogenic in their reservoir hosts but may be highly
pathogenic when transmitted to other species, including humans. Several
species of Babesia are capable of causing infection in
humans (10, 42). Of these, Babesia microti, a parasite of rodents, appears to be destined to have a significant public health impact in years ahead. In the United States, B. microti is transmitted by the deer tick Ixodes
scapularis (also called Ixodes dammini), which acquires
its infection from the white-footed mouse, Peromyscus
leucopus (8, 35, 36). Its perpetuation in nature is
thus similar to that of other tick-transmitted agents that are now
known to exist within congruent zoonotic cycles, including the Lyme
disease spirochete, Borrelia burgdorferi (25, 39), and the agent of human granulocytic ehrlichiosis
(31). It is thus not surprising that coinfection with these
agents exists in the mouse reservoir and occasionally in humans
(14, 19, 29, 32, 41).
Little is known about the mechanisms of persistence of B. microti in vertebrate hosts. The white-footed mouse reservoir
remains infected for the life of the animal, as do experimentally
infected hamsters and mice (23, 40). Other species of
Babesia are apparently capable of undergoing antigenic
variation during persistent infection, presumably in association with
immune responses mounted against parasite antigens (1). Our
group has investigated the structure of immunodominant antigens of
B. microti by expression cloning, followed by
immunoscreening with a pool of high-titer mouse and human sera. In the
course of these studies we identified a gene family that encodes
related antigens comprising geographically variable immunodominant
epitopes. Detection of immune responses to these proteins or
amplification and characterization of the genes encoding them may be
useful for the diagnosis and/or differentiation of babesial infection.
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MATERIALS AND METHODS |
Genomic DNA.
Infection with B. microti MN1 was
established by intraperitoneal inoculation of 500 µl of
cryopreserved, hamster blood into 3-week-old, 50- to 100-g, female
Golden Syrian hamsters (SASCO; Charles River, Wilmington, Mass.).
Infection was monitored by use of Giemsa-stained smears over a 2- to
3-week period. When the parasitemia levels reached 60 to 70%, the
blood was harvested by cardiac puncture. Erythrocytes were then
isolated with Histopaque 1077 (Sigma, St. Louis, Mo.) by diluting the
whole blood 1:1 with 0.9% saline and layering it over a 1/3 volume of
Histopaque. The samples were centrifuged at 500 × g
for 40 min at room temperature. The upper layers were discarded, and
DNA from the erythrocyte portion was extracted with the Isoquick
Nucleic Acid Extraction Kit (Orca Research Inc., Bothell, Wash.).
Genomic expression library and screening.
The B. microti genomic expression library was constructed by sonication
with a B. Braun (Allentown, Pa.) sonicator of 20 µg of total genomic
DNA to generate fragments of approximately 0.5 to 5.0 kbp. DNA
fragments were blunted with T4 DNA polymerase (Gibco BRL, Grand Island,
N.Y.) and were ligated to EcoRI adaptors (Stratagene, La
Jolla, Calif.). The adapted inserts were then phosphorylated with T4
polynucleotide kinase (Stratagene) and size selected with a Sephacryl
S-400-HR column (Sigma). Insert DNA was ligated to Lambda ZAP II,
EcoRI and calf intestine alkaline phosphatase-treated vector
(Stratagene), and the ligation mixture was packaged with Gigapack II
Gold packaging extract (Stratagene).
Expression screening.
Immunoreactive proteins were screened
from approximately 3 × 105 PFU with nitrocellulose
filters (Schleicher & Schuell, Keene, N.H.). Reactive plaques were
assessed with Escherichia coli-adsorbed, B. microti-infected patient serum pools (a pool of high-titer sera
from five patients from Minnesota, Nantucket, Mass., and Connecticut).
Positive plaques were visualized with 125I-conjugated
protein A (NEN Life Science Products, Boston, Mass.) or with an
alkaline phosphatase-conjugated goat anti-human immunoglobulin G (IgG;
heavy and light chains) secondary antibody (Zymed Laboratories Inc.,
South San Francisco, Calif.) and were developed with nitroblue tetrazolium-5-bromo-4-chloro-3-indolylphosphate (Gibco-BRL). Excision of the phagemid was done by the Lambda ZAP II protocol (Stratagene), and the resulting plasmid DNA was sequenced with an automated sequencer
(Perkin-Elmer Applied Biosystems Division, Foster City, Calif.) with
M13 forward, reverse, and internal DNA sequencing primers. Nucleic acid
and protein homology searches were performed with DNA Star (Genetics
Computer Group, Madison, Wis.) against the EMBL and GenBank (release
99) and the SwissProt, and Translated (release 97) databases. The
predicted protein translocation sites were analyzed with the PSORT
program (National Institute for Basic Biology, Okazaki, Japan).
Expression and purification of recombinant protein.
Expression of recombinant protein was achieved by amplifying the
plasmid insert with Pfu polymerase (Stratagene) and
clone-specific primers (25 to 30 nucleotides) which included a 5'
NdeI restriction site, an ATG initiation codon (underlined),
and a nucleotide sequence coding for six histidines (in boldface type)
(CAATTACATATGCATCACCATCACCATCAC) and
a 3' primer with a stop codon and an EcoRI restriction site. The amplification product was digested with the restriction enzymes NdeI and EcoRI (Gibco BRL), gel purified, and
ligated into a pET17b plasmid vector (Novagen, Madison, Wis.) that had
previously been cut with NdeI and EcoRI and
dephosphorylated. The ligation mixture was transformed into competent
XL1 Blue cells (Stratagene), and plasmid DNA was prepared for
sequencing (Qiagen Inc., Valencia, Calif.). Recombinant protein was
expressed by transforming plasmid DNA into competent BL21 pLysS cells
(Novagen) and inducing a single colony cell culture with 2 mM
isopropyl-
-D-thiogalactopyranoside (IPTG; Sigma).
Recombinant protein was recovered from the cell lysate with Ni-NTA
Agarose matrix (Qiagen) by following the manufacturer's instructions
and was dialyzed in 10 mM Tris (pH 8.0). Recombinant protein was
quality checked for purity by sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE), followed by staining with Coomassie blue
stain and by N-terminal protein sequencing (26) and was quantified by a Micro BCA assay (Pierce, Rockford, Ill.). Recombinants were also assayed for endotoxin contamination by the Limulus
assay (BioWhittaker, Walkersville, Md.).
Immunoblots.
A crude B. microti lysate was
prepared for immunoblotting by boiling a saponin-lysed erythrocyte
pellet in 500 µl of SDS-PAGE buffer containing 6%
-mercaptoethanol, 0.02 mg of leupeptin per ml, and 2.0 mM
phenylmethylsulfonyl fluoride. The lysate was then subjected to
SDS-PAGE on a 10% polyacrylamide gel and was transferred to
nitrocellulose (Schleicher & Schuell) with a mini-PROTEAN II (Bio-Rad
Laboratories, Hercules, Calif.) transfer system. Serum samples for
these immunoblots were diluted 1:200 in phosphate-buffered saline (PBS)
containing 0.1% Tween 20. The blots were processed by the same
protocol described below. Recombinant antigens (200 ng/lane) were
subjected to SDS-PAGE analysis with 15% polyacrylamide minigels. The
antigens were transferred to nitrocellulose BA-85 (Schleicher & Schuell) and were blocked for 1 h at room temperature with PBS
containing 1% Tween 20. The blots were then washed three times (10 min
each time) in PBS containing 0.1% Tween 20 and 0.5 M sodium chloride
(wash buffer). Next, the blots were probed for 1 h at room
temperature with serum diluted 1:500 in wash buffer followed by three
10-min washes. The blots were then incubated for 45 min at room
temperature with a 1/20,000 dilution of protein A-horseradish
peroxidase conjugate (Sigma) in wash buffer and were again washed three
times for 10 min each time. Finally, the blots were incubated in ECL
chemiluminescent substrate (Amersham Pharmacia Biotech, Inc.,
Piscataway, N.J.) for 1 min and were exposed to X-ray film (Kodak XAR5;
Eastman Kodak Co., Rochester, N.Y.) for 10 to 60 s, as required.
PCR amplification of B. microti-positive
samples.
PCR primers were designed by using the regions flanking
the six-amino-acid repeat region of the bmn1-3- and
bmn1-6-related family of genes (Table
1). Genomic DNA that had been extracted by the Isoquick (Orca Research Inc.) protocol from 200 µl of patient whole blood that had previously tested positive with 18S rRNA-specific primers Bab1 and Bab4 (33) was used as the template for all PCRs. Five to 10 µl of DNA was added to a master mixture containing 1× buffer II (Perkin-Elmer Corp., Norwalk, Conn.), 2.0 mM
MgCl2 (Perkin-Elmer Corp.), 200 µM (each) dATP, dGTP, and
dCTP and 100 µM (each) dTTP and dUTP (Boehringer Mannheim
Biochemicals, Indianapolis, Ind.), 1.5 µg of bovine serum albumin
(fraction V; Sigma) per µl, 1.25 U of Taq Gold
(Perkin-Elmer Corp.) per 50 µl, 50 pmol of each primer per 50 µl of
the reaction mixture, and 2 drops of mineral oil. Amplification was
performed in a Perkin-Elmer 480 thermal cycler by using the following
profile: incubation at 94°C for 10 min and then 45 cycles at 94°C
for 1 min and 55°C for 1 min, followed by 72°C for 5 min; the
mixture was then held at 4°C. The PCR products were evaluated for
size on 2% agarose gels (Seakem GTG; FMC Bioproducts, Rockland, Maine)
and were then Southern blotted and probed with a digoxigenin-labeled
oligonucleotide or digoxigenin-labeled PCR product (Boehringer Mannheim
Biochemicals) from the bmn1-6 flanking or amino acid repeat
region. Positive products were purified with the Qiaquick PCR
purification kit (Qiagen Inc.) and were sequenced with forward and
reverse primers on an automated sequencer (model 373A; Perkin-Elmer
Applied Biosystems Division). Computer analyses of the sequence
products were done with the Wisconsin package (Genetics Computer Group,
Madison, Wis.). The Pileup program was applied to all sequences to
create a dendrogram by using the unweighted pair-group method with
arithmetic averages clustering strategy (38). See Fig. 4B
for a dendrogram that represents the clustering of the sequences
generated with Pileup.
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TABLE 1.
Nucleotide sequence and function of oligonucleotide
primers used to evaluate genetic heterogeneity of the BMN1-6 family
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RNA isolation and RT-PCR.
RNA was harvested from Histopaque
(Sigma)-isolated infected hamster erythrocytes with Trizol LS (Gibco
BRL) according to the manufacturer's instructions. RNA was then
treated with DNase by the addition of an equal volume of DNase
digestion buffer (20 mM Tris [pH 8.0], 10 mM MgCl2) and 1 U of RNase-free DNase I (Boehringer Mannheim Biochemicals) per µg of
RNA, incubation at 37°C for 1 h, and then extraction with
phenol-chloroform followed by ethanol precipitation. The reverse
transcription (RT) reaction was performed in a 20-µl reaction volume
containing 1.7 µg of RNA, 1× PCR buffer II (Perkin-Elmer Corp.), 3.0 mM MgCl2, 1 mM (each) dATP, dTTP, dGTP, and dCTP, 1 U of
RNasin (Promega Corp., Madison, Wis.) per µl, 15 U of avian
myelobastosis virus reverse transcriptase (Promega Corp.), and 50 pmol
of antisense primer (Table 1). The reaction tubes were incubated at
42°C for 60 min, followed by incubation at 99°C for 5 min and 4°C
for 5 min. PCR amplification was carried out in a total volume of 100 µl by the addition of a second mixture containing 0.8× PCR buffer II
(Perkin-Elmer Corp.), 10% (vol/vol) glycerol, 25 µg of isopsoralen
(IP-10; HRI Research, Concord, Calif.) per ml, 1.75 mM
MgCl2, 50 pmol each of sense and antisense primers, and 2.5 U of Amplitaq (Perkin-Elmer Corp.). Amplification was performed in a
Perkin-Elmer 480 thermal cycler by using the following profile:
incubation at 94°C for 4 min and then 50 cycles at 94°C for 1 min
and 55°C for 1 min, followed by a final extension step of 72°C for
5 min; the mixture was then held at 4°C. Before the tubes were opened
they were exposed to UV light (320 to 400 nm) for 15 min to help
eliminate future amplification of the same products. Controls without
reverse transcriptase were run for each reaction to demonstrate that
the amplification products were generated from an RNA template as
opposed to a DNA template. RT-PCR products were visualized on 2%
agarose gels, purified, and sequenced as described above.
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RESULTS |
Identification of the novel gene family (BMN1-6) and homology to
known sequences.
Screening of the B. microti genomic
library with the pool of high-titer sera from infected patients
resulted in the recovery of 17 unique clones encoding immunodominant
antigens. Analysis of the DNA sequences obtained from these clones
showed that 9 of the 17 (bmn1-1, -2,
-3, -5, -6, -7,
-12, -13, and -16) were homologous to
each other, and these were chosen for further analysis. The remaining
eight clones were unique and will be described in detail elsewhere
(M. J. Lodes, R. L. Houghton, E. S. Bruinsma, R. Mohamath, L. D. Reynolds, D. R. Benson, P. J. Krause,
S. G. Reed, and D. H. Persing, submitted for publication).
Clones bmn1-1 and bmn1-16 were determined to be
partial clones of bmn1-3. Further analyses of the DNA
sequences obtained from the seven unique clones identified them as
members of a polymorphic multigene family. All contain a degenerate,
arginine- and proline-rich repeat of six amino acids, with between 9 and 22 repeat units occurring in each antigen (Fig.
1). Seven unique hexapeptide variant
repeats (REAGGP, PEAGGP, SGTVGP, SGTGWP, SEAGWP, SEAGGP, and SEAGWS)
which occur in various combinations of repeat number and location of variant repeats were identified. These arrays of repeats show limited
DNA homology and overall architecture similar to those of several gene
families found in Plasmodium spp. Among those identified
were the sequence encoding the mature erythrocyte surface antigen (MESA
or PfEMP; e.g., bmn1-6 has 56.8% identity with P. falciparum [MESA] in a 623-nucleotide region) and the sequence encoding the merozoite surface antigen (MSA-2). When the deduced protein sequences were analyzed, however, the repeat region was found
to be most closely related to various sequences of proteins involved in
cytoskeletal structure (e.g., collagen and neurofilaments) even
including conservation of the spacing of the proline residues within
the sequence (e.g., BMN1-6 has 35.8% identity within a 109-amino-acid
overlap with collagen derived from Bombyx mori [silkworm]). Similar to the P. falciparum MESA sequence,
the repeat region is flanked on both ends by relatively well conserved
sequences. There are two general motifs at the 5' flanking region; six
of the clones contain a serine (S) residue four nucleotides upstream from the tandem repeat region and 3 of the clones contain a glycine (G)
(the positions of unique residues are marked by boldface lettering in
Fig. 1). The 3' end is well conserved, with two polymorphic sites: a
tryptophan (W)-to-proline (P) change at residue 174 and an isoleucine
(I)-to-threonine (T) change at residue 181, as shown in Fig. 1. The 5'
amino acid variations correlated with the 3' variations in all cases,
suggesting allelic forms of the gene family. Hydrophobicity analysis of
the protein sequence predicted a hydrophobic N terminus which could
represent a signal sequence, again similar to the MESA protein which
displays cell-surface localization. Finally, a telomeric repeat
sequence that is well conserved in a wide variety of organisms was
found in five clones (bmn1-2, -5, -6,
-7, and -16) (as reported elsewhere [Lodes et al., submitted]).

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FIG. 1.
Amino acid sequence alignment of the BMN1-6-related
family of genes recovered from the B. microti MN1 genomic
expression library screened using B. microti-infected
patient sera. The relatively well conserved amino and carboxy termini
flank a variable length of pattern-encoded degenerate repeats composed
of six amino acids. Oligonucleotide primers BMN16-5', BMN16-3',
BMN13-5', BMN13-3', and BMN112-3' (listed in Table 1) correspond to the
solid underlined amino acids. Oligonucleotide primers BMN16A-5' and
BMN16B-3' in Table 1 relate to the dashed overlined amino acids. Boxed
amino acids indicate bmn1 downstream primers RCBB6B and
RCBB6D in Table 1. Boldface letters indicate amino acids which differ
from the consensus sequence. In the downstream sequence alignment, dots
designate termination of the clone sequence and asterisks designate
consensus with the bmn1-6 sequence. The key to the shaded
sequences appears at the bottom.
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Expression and immunoreactivity of BMN1 proteins.
To examine
the expression of the BMN1 proteins, RT-PCR was performed with RNA
isolated from hamsters infected with B. microti MN1. Three
primer sets were tested, and the results are shown in Fig.
2. Only the primer set comprising
BMN16-3' and BMN16-5' (Table 1) amplified a product of the expected
size (357 bp) (Fig. 2, lane 3). The expected products for the other two
primers sets were 303 bp for BMN13-3' and BMN13-5' (Fig. 2, lane 1) and
267 bp for BMN112-3' and BMN13-5' (Fig. 2, lane 5). This finding would be consistent with predominant expression of the BMN1-6 homologue. However, attempts to generate adequate quantities of the BMN1-6 fusion
protein to evaluate immune responses to this homologue were
unsuccessful. Instead, a closely related clone (bmn1-7) was used to generate a fusion protein; this protein was expressed and
purified and was then assessed for immunologic reactivity by Western
blotting. Figure 3A shows the reactivity
of the clone bmn1-7 culture lysate to the infected patient
serum pool (used in the screening of the library) before and after
induction with IPTG. The level of an immunoreactive protein of
approximately 38 kDa showed a marked increase 3 h after induction
compared to that at time zero. The reactivity of the recombinant
protein to infected hamster serum was also tested, and significant
serologic reactivity was observed (data not shown). The immunologic
response to the recombinant protein was then compared with the
reactivity to the B. microti crude lysate (Fig. 3B). For
both antigen preparations, reactivity was observed in human and hamster
sera (Fig. 3B and data not shown).

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FIG. 2.
Ethidium bromide-stained 2% agarose gel visualization
of RT-PCR products. Lane M, 100- to 800-bp marker; lanes 1 and 2, primers BMN13-5' and BMN13-3' and MN1 RNA template with and without the
addition of reverse transcriptase, respectively; lanes 3 and 4, primers
BMN16-5' and BMN16-3' and the MN1 RNA template with and without the
addition of reverse transcriptase, respectively; lanes 5 and 6, primers
BMN13-5' and BMN112-3' and the MN1 RNA template with and without the
addition of reverse transcriptase, respectively.
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FIG. 3.
(A) Immunoblot showing mini-induction of clone
bmn1-7 in the pET17b vector screened with the positive
patient serum pool. T0 the culture lysate with an
A560 of 0.5 at time zero; T3, the culture lysate
3 h after the addition of IPTG. (B) Immunoblot showing reactivity
of infected patient serum pool or hamster serum with increasing amounts
(5, 10, and 20 µl) of crude B. microti lysate. ,
microliters. Numbers on the left are in base pairs.
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PCR analysis of patient samples.
Given the degenerate repeat
structure of the gene family identified in these studies, we were
interested in whether geographic variation in the gene family exists,
as described for the MSA gene family of Plasmodium
falciparum (6). To analyze variations within the
clones, a PCR protocol was developed by using the conserved flanking
regions (Fig. 1) as a basis for primer design. The two general motifs
at the 5' flanking region were represented along with three of the
possible combinations from the 3' end (underlined in Fig. 1). The
spectrum of possible primer pairs from the clones was used in a
trial-and-error process to find a set or sets of primers capable of
generating a consistently amplifiable single PCR product that could be
subjected to sequence analysis (data not shown). Ultimately, primers
capable of amplifying the bmn1-6 allelic variant were chosen
for further testing of specimens.
Recovery of bmn1-6 homologues directly from human, hamster,
and mouse blood samples was then carried out by direct PCR
amplification of DNA extracted from whole blood. Figure
4A shows an amino acid sequence alignment
of the homologues recovered from enumerated patient samples, two
P. leucopus samples, one hamster sample, and the
bmn1-6 sequence as a reference. Ten variants were found, overall, together comprising 14 to 20 repeats in the tandem repeat region. The following six of the seven extant hexapeptides were represented in these variants: REAGGP, PEAGGP, SGTVGP, SGTGWP, SEAGWP,
and SEAGGP. When duplicate PCRs were performed with one sample, these
primers consistently generated the same PCR product, as determined by
direct sequencing. Every isolate that generated a product with the
bmn1-6 primers also generated appropriate PCR products, on
the basis of their sizes and sequences, with the 18S rRNA primers Bab1
and Bab4 (33). However, only 24 of 48 samples that were
positive for the 18S rRNA gene were positive with the bmn1-6
primer set. To test whether isolates potentially lacked the
bmn1-6 sequence, we tested blood specimens that were PCR
positive with the 18S rRNA primer set with PCR primers designed to
detect the conserved C-terminal portion of the bmn1
sequence. Forty-four of 48 patient isolates tested were positive,
including 20 from patients who were negative with the primer set
designed to detect the variable region. This suggests that failure to
detect the variable region of the bmn1-6 gene in some
samples was not due to the absence of the gene but more likely was due
to a lower efficiency of recovery of the variable region.

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FIG. 4.
(A) Representative amino acid sequence alignment of
B. microti from patients or animals amplified and sequenced
with the BMN16-5' and BMN16-3' primers or, in some cases, the BMN16A-5'
and BMN16B-3' primer set. Solid underlined regions indicate the former
primer set. Boldface letters indicate amino acids that differ from the
bmn1-6 consensus sequence. Numbers to the right designate
the number of patients with the same motif. The key to the shaded
sequences appears at the bottom. (B) Dendrogram generated from the
Genetics Computer Group Pileup program demonstrating the clustering of
all patient and animal isolate sequences generated from the
bmn1-6 primer sets (BMN16-5' and BMN16-3' or BMN16A-5' and
BMN16B-3'). The left column is the patient or animal code. The center
column is the known or probable location of infection (BI, Block
Island; LI, Long Island; the other abbreviations represent states). The
right column indicates the source of DNA used in the analysis.
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Differences observed between variants could be categorized into two
general classes: heterogeneity in the tandem repeat region and
heterogeneity in the flanking regions. The amplification product derived from strain MN1 was, as expected, closely related to
bmn1-6 homologues recovered from strains MN2 and MN3 (also
obtained from patients from Minnesota), which differed only by the
number of SEAGGP repeats. The sequences of isolates RIFISH, BI2018, and BI2227 differed from that of bmn1-6 with additional repeats
at positions 108 to 119 and a degenerate repeat at positions 96 to 101. Different numbers of SEAGGP repeats in these three samples also
distinguished them as variants separate from one another. Some of the
variants were also distinguished by changes in the more conserved
regions. The sequences of BI254, BI2275, BI1414, and JA7203 differed
from the bmn1-6 sequence with degenerate repeats at
positions 66 to 71, 84 to 89, and 96 to the end of the repeat region,
but they also harbored amino acid substitutions in the flanking
regions. Furthermore, BI254, BI2275, and BI1414 harbored identical
tandem repeat regions and could be differentiated only by substitutions
in the flanking regions. Thus, the total array of sequence variation
includes length polymorphism, amino acid substitutions in conserved
flanking regions, as well as insertion of degenerate motifs into the
repeat region. As a control for the reliability of our recovery
technique, we amplified some samples several times, with consistent
results. Furthermore, the isolates from hamsters had sequences
indistinguishable from those found in the corresponding human
blood samples. Taken together, these observations may have important
implications for how B. microti genetic variation might (or
might not) occur (see Discussion).
Geographic distribution of variants.
When these variants are
analyzed with respect to the geographic location of the original
sample, a clear distribution could be seen. Variants that were closely
related geographically are also closely related at the sequence level.
Figure 4B shows a dendrogram of several variants or homologues obtained
from B. microti-positive samples. Each terminal cluster
corresponds to a variant shown in Fig. 4A. The samples were from two
general regions in the United States: the upper Midwest (Minnesota) and the northeastern United States. Both regions are known to be endemic for B. microti (42). Samples from the same
geographic locations occurred in related clusters; e.g. the 11 samples
from Minnesota fell into three separate variant groups or terminal
clusters. Furthermore, these groups were found to be more related to
one another than to any other variant. These variants were most similar to the bmn1-6 sequence and varied only by the number of
SEAGGP repeats.
Samples from the northeastern states seemed to fall into two broad
groups; those samples from Nantucket comprised one variant with closely
related variants from Connecticut and Rhode Island. These variants had
flanking regions with sequences identical to the bmn1-6
sequence but differed by the presence of additional and substituted
repeats. Interestingly, the variant from Nantucket, Mass., was more
closely related to the variants from Minnesota than to the
geographically proximal variants in New York and Connecticut, which
comprised a second northeastern group that contained four variants. The
latter variants were distinguished primarily by amino acid
substitutions in the flanking regions.
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DISCUSSION |
We have identified a B. microti gene family that
encodes highly variable immunodominant antigens. Two allelic forms of
this gene family which are distinguishable by minor sequence variations in the amino- and carboxy-terminal fragments were identified. Located
between the relatively well conserved amino- and carboxy-terminal fragments are a series of degenerate six-amino-acid repeats. Members of
both supergroups vary with respect to the number of six-amino-acid repeats and the positions of degenerate motifs. The DNA sequence homology and the similarity in the overall structure of the
bmn1-6 gene family to the MESA (also known as PfEMP) gene
from Plasmodium could provide some insight into the
potential role of the babesial homologues. MESA is synthesized in
mature merozoites or parasites within erythrocytes and is then
transported to the internal face of the erythrocyte membrane (4,
16), where it specifically but noncovalently binds to erythrocyte
protein 4.1 (22). It is believed that MESA plays a role in
altering the membrane of the infected erythrocyte; this ultimately aids
in the persistence of the parasite but it is not required for in vitro
growth or cytoadherence (34). The homology of the BMN1
protein sequence to various collagen and neurofilament sequences
further supports this role in Babesia survival. All of these
sequences have been shown or are predicted to fold into
-helical
coiled coils which can form homopolymer filaments and which primarily
have structural functions. It would seem reasonable to suppose that the
primary function of BMN1 proteins might be structural, although they
could play a more direct role in host cell invasion. Whether or not the
specific role of BMN1 is similar to that of MESA remains to be seen. It
is clear, however, that the overall similarity to MESA and several
other multigene families from Plasmodium spp., Mycoplasma, and Neisseria identifies BMN1 as a
family of proteins in which the ability to generate escape variants of
immunodominant epitopes, presumably by intragenic or intergenic
recombination, is important for survival.
The existence of multiple allelic variants within this gene family also
suggests that differential expression of members of the gene family may
occur. Several of the members of the bmn1-6 gene family were
found to be located next to telomeric sequences, which is consistent
with the findings that several other antigen-encoding genes are located
in proximity to telomeric domains (15, 21). Telomeres can
exert position effects on the transcription of nearby genes, resulting
in either active expression or transcriptional repression, and these
effects are under epigenetic control (11). Therefore, it is
possible that changing the genomic location of the bmn1
clones can lead to differential expression. Indeed, clone bmn1-6, which was found to be expressed by RT-PCR, was
located near telomeric repeats. The presence of apparently unexpressed clones bmn1-2, -5, -7, -16 near telomeres is not wholly inconsistent with the presence of
antigenic gene families seen in other organisms. In trypanosomes,
several copies of the gene encoding the variant surface glycoprotein
(VSG) are found within telomeric expression sites, but only one site is
active at a time (for reviews, see references 2 and
43). The mechanism of site switching is not known,
but epigenetic regulation has been implicated. Further studies will be
necessary to determine if telomeric location associates with expression
of these genes, either directly or indirectly. It has been proposed
that protozoan species such as Plasmodium spp. and
Trypanosoma spp. might use the genetic flexibility of chromosome ends in immune evasion (21).
The finding that human isolates share the same antigen sequence
variation as hamster isolates derived from corresponding blood specimens as well as isolates obtained from P. leucopus (the
natural reservoir for B. microti) from the same geographic
regions suggests that sequence variation in the bmn1-6
family, if it occurs, does not occur rapidly. Indeed, the finding that
geographic variation exists among isolates derived from different
geographic regions suggests that although variation does occur in this
gene family, it probably occurs by recombination followed by clonal
dissemination of a variant within a specific geographic region. In this
regard, it is interesting that the isolates from eastern Long Island
and Block Island share the same sequence motif and are distinct from isolates from Nantucket, mainland Connecticut, and the upper Midwest. These distinguishing features may become useful for epidemiologic studies in the future (19). Recent studies of B. microti infection in humans have indicated that in untreated
patients, persistent infection is relatively common (18).
Such persistence could be facilitated by a mechanism of antigenic
variation involving differential gene expression or recombination.
Several other variant multigene families have been described in other
species of Babesia such as variant erythrocyte surface antigen 1 (VESA1) from B. bovis (1, 30), variable
surface merozoite antigen family (VSMA) from B. bovis
(5, 13, 17), and rhoptry-associated protein 1 (RAP-1 [also
known as Bv60, p58, Bo60, or Bc60]) from B. bovis, B. bigemina, B. divergens, B. ovis, and
B. canis (7, 9, 28, 37). Some of these families also have tandem repeat regions which have been attributed as the
source of antigenic variation in the expressed proteins, although the
overall gene structure is not necessarily similar to that of the BMN1
family (7, 17, 20, 27). Like the BMN1 family, however,
geographic variation is seen with the VSMA family (3, 17).
In addition, several of the antigens generated from these multigene
families have proved to be potentially valuable targets for
immunization in cattle (24) and have even been shown to neutralize merozoites in vitro (12).
The identification of the bmn1-6 family offers opportunities
for study of the location, function, antigenicity, and expression of
the encoded proteins. In addition, it may be possible to study variation in these loci during long-term infection in mice. Such studies are now under way in the laboratory. Studies of this type will
be useful in determining whether the bmn1-6 family will be useful as a diagnostic antigen and/or as a recombinant subunit vaccine.
 |
ACKNOWLEDGMENTS |
This work was supported by grants from the National Cancer
Institute (Public Health Service grant AI 41103), the Centers for Disease Control and Prevention (CCU 513368-01), and the Corixa Corporation.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Infectious
Disease Research Institute/Corixa Corporation, Seattle Life Sciences
Center, Suite 600, 1124 Columbia St., Seattle, WA 98104. Phone: (206) 754-5711 Fax: (206) 754-5715. E-mail: persing{at}corixa.com.
 |
REFERENCES |
| 1.
|
Allred, D. R.,
R. M. Cinque,
T. J. Lane, and K. P. Ahrens.
1994.
Antigenic variation of parasite-derived antigens on the surface of Babesia bovis-infected erythrocytes.
Infect. Immun.
62:91-98[Abstract/Free Full Text].
|
| 2.
|
Borst, P.,
W. Bitter,
P. A. Blundell,
I. Chaves,
M. Cross,
H. Gerrits,
F. van Leeuwen,
R. McCulloch,
M. Taylor, and G. Rudenko.
1998.
Control of VSG gene expression sites in Trypanosoma brucei.
Mol. Biochem. Parasitol.
91:67-76[CrossRef][Medline].
|
| 3.
|
Carson, C. A.,
H. M. Brandt,
J. B. Jensen,
C. W. Bailey, and G. K. Allen.
1994.
Use of random amplified polymorphic DNA analysis to compare Babesia bovis and B. bigemina isolates.
Parasitol. Res.
80:312-315[CrossRef][Medline].
|
| 4.
|
Coppel, R. L.,
J. G. Culvenor,
A. E. Bianco,
P. E. Crewther,
H. D. Stahl,
G. V. Brown,
R. F. Anders, and D. J. Kemp.
1986.
Variable antigen associated with the surface of erythrocytes infected with mature stages of Plasmodium falciparum.
Mol. Biochem. Parasitol.
20:265-77[CrossRef][Medline].
|
| 5.
|
Cowman, A. F.,
O. Bernard,
N. Stewart, and D. J. Kemp.
1984.
Genes of the protozoan parasite Babesia bovis that rearrange to produce RNA species with different sequences.
Cell
37:653-660[CrossRef][Medline].
|
| 6.
|
Creasey, A.,
B. Fenton,
A. Walker,
S. Thaithong,
S. Oliveira,
S. Mutambu, and D. Walliker.
1990.
Genetic diversity of Plasmodium falciparum shows geographical variation.
Am. J. Trop. Med. Hyg.
42:403-413.
|
| 7.
|
Dalrymple, B. P.,
R. E. Casu,
J. M. Peters,
C. M. Dimmock,
K. R. Gale,
R. Boese, and I. G. Wright.
1993.
Characterisation of a family of multi-copy genes encoding rhoptry protein homologues in Babesia bovis, Babesia ovis and Babesia canis.
Mol. Biochem. Parasitol.
57:181-192[CrossRef][Medline].
|
| 8.
|
Etkind, P.,
J. Piesman,
T. K. Ruebush II,
A. Spielman, and D. D. Juranek.
1980.
Methods for detecting Babesia microti infection in wild rodents.
J. Parasitol.
66:107-110[CrossRef][Medline].
|
| 9.
|
Goff, W. L.,
W. C. Davis,
G. H. Palmer,
T. F. McElwain,
W. C. Johnson,
J. F. Bailey, and T. C. McGuire.
1988.
Identification of Babesia bovis merozoite surface antigens by using immune bovine sera and monoclonal antibodies.
Infect. Immun.
56:2363-2368[Abstract/Free Full Text].
|
| 10.
|
Gorenflot, A.,
K. Moubri,
E. Precigout,
B. Carcy, and T. P. Schetters.
1998.
Human babesiosis.
Ann. Trop. Med. Parasitol.
92:489-501[CrossRef][Medline].
|
| 11.
|
Gottschling, D. E.,
O. M. Aparicio,
B. L. Billington, and V. A. Zakian.
1990.
Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
Cell
63:751-762[CrossRef][Medline].
|
| 12.
|
Hines, S. A.,
G. H. Palmer,
D. P. Jasmer,
W. L. Goff, and T. F. McElwain.
1995.
Immunization of cattle with recombinant Babesia bovis merozoite surface antigen-1.
Infect. Immun.
63:349-352[Abstract].
|
| 13.
|
Hines, S. A.,
G. H. Palmer,
D. P. Jasmer,
T. C. McGuire, and T. F. McElwain.
1992.
Neutralization-sensitive merozoite surface antigens of Babesia bovis encoded by members of a polymorphic gene family.
Mol. Biochem. Parasitol.
55:85-94[CrossRef][Medline].
|
| 14.
|
Hofmeister, E. K.,
C. P. Kolbert,
A. S. Abdulkarim,
J. M. Magera,
M. K. Hopkins,
J. R. Uhl,
A. Ambyaye,
S. R. Telford III,
F. R. Cockerill III, and D. H. Persing.
1998.
Cosegregation of a novel Bartonella species with Borrelia burgdorferi and Babesia microti in Peromyscus leucopus.
J. Infect. Dis.
177:409-416[Medline].
|
| 15.
|
Horn, D., and G. A. Cross.
1995.
A developmentally regulated position effect at a telomeric locus in Trypanosoma brucei.
Cell
83:555-561[CrossRef][Medline].
|
| 16.
|
Howard, R. J.,
J. A. Lyon,
S. Uni,
A. J. Saul,
S. B. Aley,
F. Klotz,
L. J. Panton,
J. A. Sherwood,
K. Marsh,
M. Aikawa, et al.
1987.
Transport of an Mr approximately 300,000 Plasmodium falciparum protein (Pf EMP 2) from the intraerythrocytic asexual parasite to the cytoplasmic face of the host cell membrane.
J. Cell. Biol.
104:1269-1280[Abstract/Free Full Text].
|
| 17.
|
Jasmer, D. P.,
D. W. Reduker,
S. A. Hines,
L. E. Perryman, and T. C. McGuire.
1992.
Surface epitope localization and gene structure of a Babesia bovis 44-kilodalton variable merozoite surface antigen.
Mol. Biochem. Parasitol.
55:75-83[CrossRef][Medline].
|
| 18.
|
Krause, P. J.,
A. Spielman,
S. R. Telford III,
V. K. Sikand,
K. McKay,
D. Christianson,
R. J. Pollack,
P. Brassard,
J. Magera,
R. Ryan, and D. H. Persing.
1998.
Persistent parasitemia after acute babesiosis.
N. Engl. J. Med.
339:160-165[Abstract/Free Full Text].
|
| 19.
|
Krause, P. J.,
S. R. Telford III,
A. Spielman,
V. Sikand,
R. Ryan,
D. Christianson,
G. Burke,
P. Brassard,
R. Pollack,
J. Peck, and D. H. Persing.
1996.
Concurrent Lyme disease and babesiosis. Evidence for increased severity and duration of illness.
JAMA
275:1657-1660[Abstract].
|
| 20.
|
Kung'u, M. W.,
B. P. Dalrymple,
I. G. Wright, and J. M. Peters.
1992.
Cloning and characterisation of members of a family of Babesia bigemina antigen genes containing repeated sequences.
Mol. Biochem. Parasitol.
55:29-38[CrossRef][Medline].
|
| 21.
|
Lanzer, M.,
K. Fischer, and S. M. Le Blancq.
1995.
Parasitism and chromosome dynamics in protozoan parasites: is there a connection?
Mol. Biochem. Parasitol.
70:1-8[CrossRef][Medline].
|
| 22.
|
Lustigman, S.,
R. F. Anders,
G. V. Brown, and R. L. Coppel.
1990.
The mature-parasite-infected erythrocyte surface antigen (MESA) of Plasmodium falciparum associates with the erythrocyte membrane skeletal protein, band 4.1.
Mol. Biochem. Parasitol.
38:261-270[CrossRef][Medline].
|
| 23.
|
Lykins, J. D.,
M. Ristic, and R. M. Weisiger.
1975.
Babesia microti: pathogenesis of parasite of human origin in the hamster.
Exp. Parasitol.
37:388-397[CrossRef][Medline].
|
| 24.
|
Mahoney, D. F.,
J. D. Kerr,
B. V. Goodger, and I. G. Wright.
1979.
The immune response of cattle to Babesia bovis (syn. B. argentina). Studies on the nature and specificity of protection.
Int. J. Parasitol.
9:297-306[CrossRef][Medline].
|
| 25.
|
Mather, T. N., and M. E. Mather.
1990.
Intrinsic competence of three ixodid ticks (Acari) as vectors of the Lyme disease spirochete.
J. Med. Entomol.
27:646-650[Medline].
|
| 26.
|
Matsudaira, P.
1987.
Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes.
J. Biol. Chem.
262:10035-10038[Abstract/Free Full Text].
|
| 27.
|
Mishra, V. S.,
T. F. McElwain,
J. B. Dame, and E. B. Stephens.
1992.
Isolation, sequence and differential expression of the p58 gene family of Babesia bigemina.
Mol. Biochem. Parasitol.
53:149-158[CrossRef][Medline].
|
| 28.
|
Mishra, V. S.,
E. B. Stephens,
J. B. Dame,
L. E. Perryman,
T. C. McGuire, and T. F. McElwain.
1991.
Immunogenicity and sequence analysis of recombinant p58: a neutralization-sensitive, antigenically conserved Babesia bigemina merozoite surface protein.
Mol. Biochem. Parasitol.
47:207-212[CrossRef][Medline].
|
| 29.
|
Mitchell, P. D.,
K. D. Reed, and J. M. Hofkes.
1996.
Immunoserologic evidence of coinfection with Borrelia burgdorferi, Babesia microti, and human granulocytic Ehrlichia species in residents of Wisconsin and Minnesota.
J. Clin. Microbiol.
34:724-727[Abstract].
|
| 30.
|
O'Connor, R. M.,
T. J. Lane,
S. E. Stroup, and D. R. Allred.
1997.
Characterization of a variant erythrocyte surface antigen (VESA1) expressed by Babesia bovis during antigenic variation.
Mol. Biochem. Parasitol.
89:259-270[CrossRef][Medline].
|
| 31.
|
Pancholi, P.,
C. P. Kolbert,
P. D. Mitchell,
K. D. Reed, Jr.,
J. S. Dumler,
J. S. Bakken,
S. R. Telford III, and D. H. Persing.
1995.
Ixodes dammini as a potential vector of human granulocytic ehrlichiosis.
J. Infect. Dis.
172:1007-1012[Medline].
|
| 32.
|
Persing, D. H.
1997.
The cold zone: a curious convergence of tick-transmitted diseases.
Clin. Infect. Dis.
25:S35-S42.
|
| 33.
|
Persing, D. H.,
D. Mathiesen,
W. F. Marshall,
S. R. Telford III,
A. Spielman,
J. W. Thomford, and P. A. Conrad.
1992.
Detection of Babesia microti by polymerase chain reaction.
J. Clin. Microbiol.
30:2097-2103[Abstract/Free Full Text].
|
| 34.
|
Petersen, C.,
R. Nelson,
C. Magowan,
W. Wollish,
J. Jensen, and J. Leech.
1989.
The mature erythrocyte surface antigen of Plasmodium falciparum is not required for knobs or cytoadherence.
Mol. Biochem. Parasitol.
36:61-65[CrossRef][Medline].
|
| 35.
|
Piesman, J.,
S. J. Karakashian,
S. Lewengrub,
M. A. Rudzinska, and A. Spielman.
1986.
Development of Babesia microti sporozoites in adult Ixodes dammini.
Int. J. Parasitol.
16:381-385[CrossRef][Medline].
|
| 36.
|
Piesman, J., and A. Spielman.
1982.
Babesia microti: infectivity of parasites from ticks for hamsters and white-footed mice.
Exp. Parasitol.
53:242-248[CrossRef][Medline].
|
| 37.
|
Skuce, P. J.,
T. R. Mallon, and S. M. Taylor.
1996.
Molecular cloning of a putative rhoptry associated protein homologue from Babesia divergens.
Mol. Biochem. Parasitol.
77:99-102[CrossRef][Medline].
|
| 38.
|
Sneath, P. H. A., and R. R. Sokal.
1973.
Numerical taxonomy. The principles and practice of numerical classification.
W. H. Freeman & Company, San Francisco, Calif.
|
| 39.
|
Spielman, A.
1976.
Human babesiosis on Nantucket Island: transmission by nymphal Ixodes ticks.
Am. J. Trop. Med. Hyg.
25:784-787.
|
| 40.
|
Spielman, A.,
P. Etkind,
J. Piesman,
T. K. Ruebush II,
D. D. Juranek, and M. S. Jacobs.
1981.
Reservoir hosts of human babesiosis on Nantucket Island.
Am. J. Trop. Med. Hyg.
30:560-565.
|
| 41.
|
Sweeney, C. J.,
M. Ghassemi,
W. A. Agger, and D. H. Persing.
1998.
Coinfection with Babesia microti and Borrelia burgdorferi in a western Wisconsin resident.
Mayo Clin. Proc.
73:338-341[Medline].
|
| 42.
|
Telford, S. R., III, and A. Spielman.
1998.
Babesiosis of humans, p. 349-359.
In
L. Collier, A. Balows, and M. Sussman (ed.), Topley and Wilson's microbiology and microbial infections, 9th ed., vol. 5. Arnold, London, England.
|
| 43.
|
Vanhamme, L., and E. Pays.
1995.
Control of gene expression in trypanosomes.
Microbiol. Rev.
59:223-240[Abstract/Free Full Text].
|
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