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Journal of Clinical Microbiology, December 2000, p. 4681-4682, Vol. 38, No. 12
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Molecular Identification of Pasteurella
dagmatis Peritonitis in a Patient Undergoing Peritoneal
Dialysis
Frédéric
Wallet,1,*
Fatouma
Touré,2
Annie
Devalckenaere,1
Dominique
Pagniez,2 and
René J.
Courcol1
Laboratoire de
Bactériologie-Hygiène1 and
Service de Néphrologie B,2
Hôpital A. Calmette, CHRU de Lille, Lille, France
Received 30 June 2000/Returned for modification 18 August
2000/Accepted 21 September 2000
 |
ABSTRACT |
Pasteurella dagmatis was identified as the etiologic
agent of peritonitis in a continuous ambulatory peritoneal dialysis
patient by utilizing a molecular kit in our hospital's clinical
laboratory. This method would appear a useful approach to identify a
species of Pasteurella not included in the existing
database of commercial identification kits when discrepancies exist
between phenotypic tests.
 |
CASE REPORT |
A 43-year-old female patient was
admitted to the nephrology unit for evaluation of turbidity of
peritoneal fluid. The peritoneal catheter exit site was of normal
appearance. Microscopic examination of the fluid revealed 5,800 cells/mm3 with 90% polymorphonuclear cells. Gram staining
did not reveal any microorganisms. The white blood cell count was
7.7 × 109/liter with 81% polymorphonuclear cells.
Primary antibiotic therapy was started with intraperitoneal
administration of piperacillin (2 g, four times a day) and
cephalothin (500 mg, four times a day), resulting in rapid improvement.
The outcome was uneventful, with the patient being discharged 6 days
later on oral ofloxacin (200 mg/day) for 10 days. The patient's mother
drew our attention to the fact that her daughter lived in the company
of at least 10 cats. The patient denied accidental perforation of the
transfer line by feline claws or animal presence during bag exchanges. Pasteurella dagmatis was not found in the other clinical
samples: blood or sputum.
The peritoneal specimen was cultured for aerobic and anaerobic
organisms. Aerobic cultures on blood agar and chocolate agar plates
without V factor yielded a gram-negative rod pure culture. A Gram stain
from the culture showed small gram-negative coccobacilli with
occasional longer bacillary forms. This nonmotile, non-spore-forming facultative aerobic bacterium showed white-grey, small (1 mm), smooth
nonhemolytic colonies after 24 h of incubation. The bacterium was
catalase and oxidase positive. It was able to reduce nitrate to
nitrite, and it produced indole. Phenotypic identification performed
twice with the API 20E system (bioMérieux, Marcy l'Etoile, France) using an inoculum with a McFarland standard of 1 confirmed Pasteurella multocida (code number = 0040024).
Surprisingly, the ornithine decarboxylase assay was negative, and
mannitol was not fermented. A second traditional phenotypic
identification (6) showed that the bacterium was able to
produce acid by fermentation from glucose, maltose, trehalose, and
saccharose, and it hydrolyzed urea. The hydrolysis of urea and the
maltose fermentation were compatible with the identification of
P. dagmatis. The discrepancy of the urease test and the fact
that the library of the API 20E system contained only three species of
Pasteurella prompted us to use the Microseq 500 16S
ribosomal DNA (rDNA) bacterial sequencing kit (PE Applied Biosystems,
Foster City, Calif.). A 527-bp portion of the amplified DNA was
sequenced on an automated DNA sequencer (377 ABI Prism; PE Applied
Biosystems). These 527 bp were compared with National Center for
Biotechnology Information GenBank entries by using the BLAST algorithm,
giving 97% homology with P. dagmatis and 94% with P. multocida. The molecular identification of P. dagmatis
was the most reliable, corresponding to the phenotypic identification.
At the same time, because the colony morphologies of the two
Pasteurella species are similar, hydrolysis of urea was
tested on several colonies of the primary isolate to rule out the
possibility of a coinfection with P. multocida, as described by Zbinden et al. for cat-bite wounds (8). All the colonies were urease positive. At last, in vitro susceptibility tests, using a
disk-diffusion technique on Mueller-Hinton agar with 5% horse blood
added, showed that this bacterium was susceptible to ampicillin,
piperacillin, cefotaxime, aminoglycosides,
trimethoprim-sulfamethoxazole, and fluoroquinolones.
Pasteurella species exist as normal upper respiratory
and gastrointestinal flora of cats (50 to 90% colonized) and dogs (50 to 66% colonized) and may colonize the human respiratory tract in
underlying respiratory tract disease. Among the Pasteurella species, P. multocida is most frequently reported
(3). We report a case of continuous ambulatory peritoneal
dialysis (CAPD) peritonitis, which was for the first time attributed to
P. dagmatis using a combination of phenotypic and molecular
methods for identification.
CAPD peritonitis is usually caused by a single organism.
Coagulase-negative staphylococci are the most commonly identified agents (7). Pasteurella species are rarely
reported. In the recent literature, the clinical and microbiological
features of P. multocida cases have been described (4,
5). To prevent peritonitis due to Pasteurella spp. in
the patient undergoing CAPD, animals should be kept away from the
location of exchanges, and animal contact with peritoneal dialysis
equipment must be avoided. In the P. dagmatis endocarditis
case described by Sorbello et al. (6), the bacterium was
identified by using two commercial identification kits. Discrepancies
were found between these methods, and the identification was eventually
made possible by combining phenotypic features obtained with the
different identification systems. Using several commercial kits, it is
indeed possible to gather all the necessary substrates to obtain a
correct identification, but this approach is time-consuming. Moreover,
the commercial identification systems are not useful to differentiate
P. multocida from P. dagmatis, since P. dagmatis is not included in the existing database.
Fajfar-Whetstone et al. (2) were able to obtain a good
identification of P. dagmatis, not with the API 20E system but with the test for hydrolysis of urea, thus showing the limits of
the commercial kit. Among Pasteurella spp., P. multocida is the most frequently reported organism (3),
particularly in CAPD, but the method of identification is rarely
described (4, 5). The molecular approach using 16S rDNA
bacterial sequencing is an alternative method to identify the
bacterium. The use of the Microseq 500 16S rDNA bacterial sequencing
kit allowed us to confirm in 1 day, in a routine diagnostic laboratory,
the first reported case of P. dagmatis peritonitis in a CAPD
patient. This method would appear a useful approach to identify species
of Pasteurella not included in the existing database of
commercial identification kits, as well as subspecies of P. multocida which may be difficult to identify using phenotypic
tests (1), thus giving more information on the pathogenicity
of such bacteria when they are found in clinical samples.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratoire de
Bactériologie-Hygiène, Blvd. du Pr Leclercq, 59037 Lille
Cedex, France. Phone: 03 20 44 54 80. Fax: 03 20 44 48 95. E-mail:
fwallet{at}chru-lille.fr.
 |
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Journal of Clinical Microbiology, December 2000, p. 4681-4682, Vol. 38, No. 12
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
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