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Journal of Clinical Microbiology, March 2000, p. 1187-1190, Vol. 38, No. 3
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Novel Screening Method for Urine Cultures Using a
Filter Paper Dilution System
Calvin M.
Kunin1,* and
William J.
Buesching2
Department of Internal
Medicine1 and Division of Medical Microbiology,
Department of Pathology,2 The Ohio
State University College of Medicine and Public Health, Columbus, Ohio
43210
Received 10 September 1999/Returned for modification 17 October
1999/Accepted 5 December 1999
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ABSTRACT |
We have developed a novel method for urine culture for office
practice based on the use of filter paper as a solid-phase dilution device. Filtration dilutes and spreads the inoculum onto a solid culture surface. Experiments were conducted to determine the optimum inoculum size, microbial permeability through filter papers, and ability to exclude vaginal epithelial cells. The filter paper dilution
system was compared to the standard streak method to detect bacteriuria
in specimens submitted to the diagnostic laboratory. The sensitivity
and specificity of the filter paper dilution system for detection of
high-count (
104 CFU/ml) gram-negative bacteriuria in 487 urine specimens were 98.2 and 97.4%, respectively. The sensitivity and
specificity for gram-positive bacteriuria in 404 urine specimens were
91.2 and 99.2%, respectively. Low-count gram-negative bacteriuria
(<104 CFU/ml) was detected by the filter paper dilution
system in five of nine specimens (55.6%). In addition, the filter
paper dilution system was able to detect gram-negative bacteria in 12 of 41 (29.3%) mixed cultures. Lactobacillus and
Gardnerella organisms in urine specimens were excluded by
the filter paper dilution system. Only three of eight
Candida sp. isolates were detected at counts of
104 CFU/ml. The system has good storage properties and
can be inoculated at the point of source without the need for
refrigeration or preservatives. It should be a useful screening method
for office practice, where members of the family
Enterobacteriaceae and staphylococci cause most infections.
Standard culture methods are preferred for hospital diagnostic
microbiology laboratories, where there is a need to detect yeasts and
fastidious microorganisms and to isolate individual colonies from mixed cultures.
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INTRODUCTION |
The quantitative culture is the
"gold standard" for the diagnosis of urinary tract infections.
Urine cultures account for a large proportion of the tests performed in
the clinical microbiology laboratory (1, 2). The information
must be clinically meaningful and reported to physicians in a timely
manner. The quality of the work depends on how well the specimens are
collected, transported, and processed. One of the major problems for
both the laboratory and clinicians is distinguishing between
contaminants and low counts of uropathogens in voided urine obtained
from females (2-4, 7).
The standard urine culture procedure is the surface streak plate method
combined with isolation, identification, and antibiotic susceptibility
testing. Several relatively simple and inexpensive screening methods
are available for use in office practice (1, 2, 4). These
include filter paper strips applied to the surface of small plastic
plates; dip-slides; and tube, cup, and pad culture methods. A variety
of automated tests have been developed to rapidly quantitate and
identify microorganisms and determine antimicrobial susceptibility
(1, 2). All of these methods involve inoculation of whole
urine directly into the system.
We have developed a novel method to perform quantitative urine cultures
based on the use of filter paper as a solid-phase dilution device.
Filtration dilutes and spreads the inoculum onto a solid culture
surface. It removes yeasts and bacteria adherent to vaginal epithelial
cells. The potential advantages include inexpensive construction,
simplicity of use, inoculation at the site of collection, elimination
of vaginal cell contaminants, detection of low-count bacteriuria,
preliminary identification, and good storage properties. The method can
be adapted for automated systems.
In this report, we describe the design and characteristics of the
filter paper culture system and its ability to detect significant bacteriuria compared to the agar streak method used in the diagnostic microbiology laboratory.
(An application has been filed for a U.S. provisional patent for a
solid-phase dilution system for urine culture.)
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MATERIALS AND METHODS |
Description of the filter paper dilution system.
The filter
paper dilution system consists of a three-layer, circular filter paper
sandwich applied to the surface of 60- by 15-mm-diameter petri dish
(Fig. 1). The top layer filters the inoculum, the middle layer traps the microorganisms, and the bottom layer stores the media. The filtration component consists of a Whatman
no. 3 47-mm-diameter filter fitted with a small tab (Whatman International, Ltd., Maidstone, England). The culture component consists an absorbent filter pad overlaid by a 47-mm-diameter, 0.45 µM pore grid filter (Millipore Corporation, Bedford, Mass.) as used
in water bacteriology. A white grid is used for gram-negative bacteria,
and a black grid is used for gram-positive bacteria. The culture
component is glued at several points to the bottom of the dish to
prevent movement. The media consist of Endo broth MF (Difco, Detroit,
Mich.) for gram-negative bacteria and Columbia broth containing 10 µg
of colistin sulfate per ml and 15 µg of nalidixic acid per ml (Sigma,
St. Louis, Mo.) for gram-positive bacteria. The liquid media are added
to the culture system and stored in plastic bags at 4°C or
lyophilized (Freezemobile 6; Virtis Co., Inc., Gardiner, N.Y.) and
stored at room temperature until rehydrated with 2 ml of sterile water.
The inoculum consists of 0.1 ml of urine applied to the center of the
top layer. The top layer is removed at 15 to 30 min after inoculation.
It can be left in place for at least 2 h before colonies begin to
form. A forceps is applied to the tab to peel it off. The system may be
kept at room temperature until incubated at 35°C. Colonies are
counted after 24 and 48 h of incubation.

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FIG. 1.
Illustration of the filter paper dilution system. The
system is activated by adding 2 ml of selective medium or water to
dehydrated medium on the pads. (A and E) Top and bottom, respectively,
of a 60- by 15-mm petri dish. (B) Top layer. To the center of a Whatman
no. 3 filter paper with a tab, 0.1 ml of urine is applied after
activation. (C) Middle layer. Black and white 0.45 µM pore grids trap
the bacteria and provide the growth surface. (D) Bottom layer. An
absorbent pad serves as a reservoir for the medium. (F) Papers C and D
are fixed to the bottom of the petri dish at points H. Layer B is
removed by the tab 15 to 60 min after application of the inoculum. (G)
Bacterial colonies on the surface of the grid after incubation.
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Penetration of microorganisms through the filter papers.
The
microorganisms consisted of Escherichia coli ATCC 25922, Staphylococcus aureus ATCC 29213, Staphylococcus
epidermidis ATCC 12228, Enterococcus faecalis ATCC
29212, Candida albicans ATCC 90028, and clinical isolates of
Klebsiella pneumoniae and Enterobacter cloacae.
Stock cultures were streaked on MacConkey agar for gram-negative
bacteria and sheep blood agar plates for gram-positive bacteria and
yeasts. A sample of a single colony was added to trypticase soy broth
and incubated for several hours at 37°C until cloudy. The suspension
was then diluted to a 0.5 McFarland standard and serially 10-fold
diluted in Trypticase soy broth (Difco). Separate pipette tips were
used for each dilution. A 0.1-ml sample of each of the serial dilutions
was applied to the center of the surface of the system. An identical
inoculum was spread on the surface of MacConkey or Trypticase soy agar plates used for controls. The plates were incubated for 1 h at room temperature. The filter papers were then removed, the plates were
incubated overnight at 37°C, and the colonies were counted. The ratio
of the colony counts was determined for the filter paper systems versus
the controls at dilutions at which discrete colonies could be readily
distinguished (about 30 to 100 colonies).
The optimum time for penetration of bacteria through the surface filter
paper was determined by using
E. coli ATCC 25922 as
the test
microorganism. A 0.1-ml sample of each of the serial
dilutions (as
described above) was added to the surface of the
system containing Endo
broth. The Whatman filters were removed
at intervals, the plates were
incubated overnight at 37°C, and
the colonies were
counted.
Penetration of vaginal epithelial cells through filter
paper.
Vaginal cells were collected from three adult women. One
woman had normal menstrual cycles, and two were postmenopausal and receiving hormone replacement therapy. A cotton swab was gently rotated
over the mucosal surface of the vaginal vault. The swab was then
swirled in 30 ml of Dulbecco's phosphate-buffered saline (Gibco BRL,
Grand Island, N.Y.). The cell suspension was vortexed, and 5 ml was
passed through a Whatman no. 3 filter paper cone. A 0.5-ml sample of
the cell suspension and the filtrate was added to PreservCyt solution
(Cytyc Corporation, Boxborough, Mass.). An even layer of cells was
deposited on a microscope slide. The slides were processed by the
Papanicolaou method in the Cytology Laboratory of the Ohio State
University Hospital. Cell counts were performed on 10 100× or ×400
fields depending on the cell density.
Comparison of the filter paper system with standard urine
cultures performed in the clinical diagnostic microbiology
laboratory.
Urine specimens were obtained from 487 adult patients
(females, 57.4%; males, 42.5%) from the clinic and inpatient services at the Ohio State University Medical Center. The specimens were transported to the clinical diagnostic microbiology laboratory by using
the Vacutainer Urine Collection kit (Becton Dickinson, Franklin Lakes,
N.J.). Urine specimens, without preservative, were obtained from an
additional 54 clinic patients. The specimens were cultured by the
streak plate method (4) with 0.01-ml quantitative loops on
MacConkey and Columbia colistin-nalidixic acid agar (Remel, Lenexa,
Kans.). The inoculum was evenly distributed by a rotating device. The
urine specimens were stored at 4°C and cultured by the filter paper
system within 24 h. The findings were compared with laboratory
reports obtained from the hospital computer system. In a parallel
study, freshly obtained urine, without preservative, was tested
directly in the filter paper culture system before the sample was sent
in the Vacutainer system to the laboratory.
End points and statistical analysis.
Calculations of
sensitivity, specificity, and related values were performed as
described by Sackett et al. (6) with the following
assumptions. For the clinical diagnostic microbiology laboratory, a
negative urine culture was considered to be <10,000 CFU/ml. A positive
culture was considered to be
10,000 CFU/ml. For the filter paper
dilution system, a negative culture was considered to be no growth or
<10 CFU. A positive culture was considered to be from >10 CFU to too
numerous to count.
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RESULTS |
Penetration of microorganisms through filter papers.
In
preliminary experiments, an 0.1-ml inoculum of E. coli cells
applied to Whatman no. 3 filter paper was found to provide optimal
dilution and spread compared to smaller or larger inocula, more porous
Whatman no. 1 and 2 filters, and the thinner no. 5 and 6 filters. The
growth zone occupied almost the full diameter of the HA filters when
0.1-ml inocula of
105 CFU/ml were applied to the
filtration component.
Penetration was virtually complete within 15 min (Table
1). In this experiment, the filter paper
diluted the inoculum about
1:74. In other experiments, the dilution
factor for
E. coli was
1:8, 1:47, and 1:63. Other dilution
factors for microorganisms
tested with the filter paper system were as
follows:
S. aureus,
1:8 and 1:13;
S. epidermidis,
1:24;
E. faecalis, 1:14;
E. cloacae,
1:6.2; and
K. pneumoniae, 1:127.
C. albicans penetrated very
poorly
through Whatman no. 3 paper (dilution factor of about 1:600).
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TABLE 1.
Effect of time at room temperature before removal of the
Whatman no. 3 filtration component from the filter paper dilution
system on the colony counts of E. coli ATCC 25922
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Up to about 100 colonies could be counted on the HA filters.
E. coli produced small, relatively discrete, red colonies. Other
members of the family
Enterobacteriaceae tended to form
larger
colonies.
S. aureus and
S. epidermidis
produced characteristic
orange colonies and white colonies,
respectively. Streptococci
formed tiny "salt- and pepper-like"
colonies.
Penetration of vaginal epithelial cells through Whatman no. 3 filter paper.
The counts of squamous epithelial vaginal cells of
the unfiltered suspensions were 69.2, 62.6, and 32.2 per ×100 field
for the three women, respectively. Some of the preparations contained 0 to 4 leukocytes per field and occasional colonies of bacteria. In
contrast, there were virtually no intact vaginal squamous epithelial cells, leukocytes, or bacterial colonies in the Whatman no. 3 filtrates. Only a rare cell was seen on the entire slide. The filtrates
contained small numbers of red-stained nonnucleated cell fragments.
These were about a quarter of the size of the intact cells and numbered
0.8, 4.0, and 4.7 per ×100 field for the three women, respectively.
Thus, filtration was shown to remove 94% of the epithelial cells.
Comparison of the filter paper dilution system and streak plate
method.
An inoculum of 0.1 ml was selected to achieve optimum
spread, and Whatman no. 3 filter paper was used to achieve maximum
dilution. The filtration component was removed 15 to 60 min after
incubation at room temperature. About half of the systems contained
fresh media. The other half consisted of dehydrated plates stored at room temperature for up to 6 weeks. Two milliliters of sterile water
was added to the dehydrated plates prior to use. The data from the
fresh and dehydrated systems were pooled for analysis, since identical
results were obtained. The results for gram-negative and gram-positive
bacteria are shown in Tables 2 and
3, respectively. The sensitivity and
specificity of the filter paper dilution system correlated well with
the clinical diagnostic microbiology laboratory at a positive cutoff
point of
104 CFU/ml.
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TABLE 2.
Comparison of 487 urine cultures for gram-negative
bacteria performed with the filter paper dilution system versus the
streak plate method used in the diagnostic
microbiology laboratorya
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TABLE 3.
Comparison of 404 urine cultures for gram-positive
bacteria performed with the filter paper dilution system versus the
streak plate method in the diagnostic
microbiology laboratorya
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Low-count gram-negative bacteriuria (<10
4 CFU/ml)
determined by the streak method was detected in five of nine specimens
(55.6%)
by the filter paper dilution system (as one or more colonies).
Mixed cultures (<10
4 CFU/ml) by the streak method were
sterile in the filter paper
dilution system in 29 of 41 specimens
(70.7%). The remaining 12
of 41 (29.3%) contained one or more
colonies of gram-negative
bacteria.
Lactobacillus and
Gardnerella at counts of 10
4 to 10
5
CFU/ml by the streak method were not detected by the filter paper
dilution system. Only 3 of 8
Candida sp. isolates at counts
of
>10
4 CFU/ml were detected by the filter paper system.
These observations
suggest that the filter removed cell-associated
bacteria and yeasts
usually did not penetrate the filter well. The
filter paper system
appeared to be able to isolate gram-negative
bacteria from mixed
cultures.
Although the gram-negative and gram-positive filter paper sets tended
to be selective for their respective groups, several
species of
gram-negative bacteria were isolated in both systems
when used at the
same time. These included
Klebsiella and
Enterobacter spp. (6 of 14);
Pseudomonas sp. (2 of 7); and
Proteus,
Providencia,
or
Morganella (6 of 7). This was presumed to be due to
resistance
to the concentrations of nalidixic acid and colistin
contained
in the Columbia broth. A positive test in both filter paper
sets
suggests the presence of these
microorganisms.
Fifty-four fresh urine specimens, without preservative, were cultured
directly on the filter paper system. The tests were
performed and
interpreted as positive or negative by a medical
secretary who had no
prior microbiology training. The system detected
five of five
E. coli isolates and one of one each of
Proteus mirabilis and
S. aureus isolates, as well as a coagulase-negative
Staphylococcus
isolate at counts of

10
4 CFU/ml.
E. faecalis was not detected in one
specimen.
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DISCUSSION |
The novel features of the filter paper dilution urine culture
system are its ability to dilute and spread the inoculum and its
ability to remove cellular elements. It overcomes the problem of
contamination of female-voided urine by cell-associated, commensal microorganisms (3, 4). The magnitude of dilution is not great
about 8- to 75-fold with E. coli with a Whatman no. 3 filter. A 10-fold-lower final concentration is achieved by using an
inoculum of 0.1 ml. Exact quantitation is not possible at counts of
104 CFU/ml. Nevertheless, the system provides clinically
meaningful results for rapidly growing bacteria equivalent to those
achieved by the standard streak method.
The system has several advantages over current urine culture screening
methods (4). These include (i) the ability to detect low-count bacteriuria, even in the presence of mixed cultures; (ii)
inexpensive construction; (iii) ease of use; and (iv) excellent storage
characteristics. The system should reduce the need for repeat cultures
by eliminating low-count contaminants and the costs of inappropriate
therapy by eliminating false positives. The differential medium allows
preliminary identification. Colonies can be isolated from cultures
containing single microorganisms for formal identification and
susceptibility tests.
The system can be inoculated at the point of collection.
Point-of-source collection is controversial (5), but has
several advantages. These include elimination of refrigeration or
preservatives, decreased workload for laboratory personnel, and faster
turnaround times. The intact units can be transported to the laboratory
from the point of source in hospitals and clinics several hours after inoculation. If there is a long delay in transport, the filtration device can be removed at the site of collection. Preliminary results can be obtained after suitable incubation in clinics and the field. It
should be possible to discard the negatives and transport only the
positives to the diagnostic microbiology laboratory for further identification and susceptibility testing. The units can also be used
for self-testing by patients with recurrent urinary tract infections
and for screening.
The drawbacks for use in the field include the need to inoculate urine
specimens soon after collection unless refrigerated and the need to
remove the filtration component if there is a long delay prior to
transport, as well as issues of quality control. The disadvantages of
the filter paper system for use in hospital diagnostic laboratories are
(i) the difficulty in isolating individual colonies from mixed
cultures, (ii) the inability to provide quantitative end points, (iii)
the poor sensitivity for yeasts, and (iv) uncertainty about its ability
to detect fastidious microorganisms.
The prototype device described in this report needs to be improved
before it is suitable for use in the field or can replace standard
methods in hospital diagnostic laboratories. Additional features might
include a more selective filtration component; improved media; heavier
plastic construction; a dome-shaped, twistoff screw top; an inoculation
port at the top of the dome; supporting threads in the filtration
component to prevent tears; and a 0.1-ml inoculator. We are currently
exploring the use of filter papers of different sizes and porosities to
inoculate differential agar culture plates. The system might also be
adapted for automation. Multiple syringes could be used to aspirate
urine from trays of collection tubes and apply a fixed inoculum to the
culture systems. After penetration is complete, the filtration
component could be mechanically removed at the tab. It might be
possible to automate direct susceptibility testing by devising a system
with multiple syringes to inoculate urine on multiple small filter
papers impregnated with antimicrobial drugs. The end point would be
growth or no growth under the papers on agar plates.
In summary, we have described a novel system for urine cultures based
on filtration methods. The system has the potential to reduce costs of
screening, avoid contamination, and provide more rapid results. It can
be adapted for point-of-source and automated cultures.
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ACKNOWLEDGMENTS |
This study was supported by the Leadership Council of the Ohio
State University Medical Center.
We are grateful to Hua Hua Tong and Karen Blackburn for technical assistance.
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FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Internal Medicine, The Ohio State University College of Medicine and Public Health, Room M110, Starling Loving Hall, 320 West 10th Ave.,
Columbus, OH 43210. Phone: (614) 293-8976. Fax: (614) 293-5627. E-mail:
ckunin{at}columbus.rr.com.
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Journal of Clinical Microbiology, March 2000, p. 1187-1190, Vol. 38, No. 3
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.