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Journal of Clinical Microbiology, April 2000, p. 1364-1369, Vol. 38, No. 4
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Comparison of the Nucleotide Sequences of 16S rRNA, 444 Ep-ank, and groESL Heat Shock Operon Genes in
Naturally Occurring Ehrlichia equi and Human Granulocytic
Ehrlichiosis Agent Isolates from Northern California
Joon-seok
Chae,1
Janet E.
Foley,1
J. Stephen
Dumler,2 and
John E.
Madigan1,*
Department of Medicine and Epidemiology,
School of Veterinary Medicine, University of California, Davis,
California 95616,1 and Department of
Pathology, The Johns Hopkins University School of Medicine,
Baltimore, Maryland 212052
Received 2 August 1999/Returned for modification 10 November
1999/Accepted 29 December 1999
 |
ABSTRACT |
We examined 11 naturally occurring isolates of Ehrlichia
equi in horses and two human granulocytic ehrlichiosis
agent isolates in California for sequence diversity in three genes.
Ehrlichia equi isolates were from Sierra
(n = 6), Mendocino (n = 3), Sonoma (n = 1), and Marin (n = 1) counties,
and human granulocytic ehrlichiosis (HGE) agent isolates were obtained
from Humboldt county. PCR with specific primers for 16S rRNA, 444 Ep-ank and groESL heat shock operon genes
successfully produced amplicons for all 13 clinical samples. The 444 Ep-ank gene of the HGE agent and E. equi
isolates from northern California is different from the eastern U.S.
isolates BDS and USG3. The translated amino acid sequence of the
groESL heat shock operon gene fragment is identical among
E. equi, the HGE agent, and E. phagocytophila,
with the exception of the northern Californian equine
CASOLJ isolate. Microheterogeneity was observed in the 16S rRNA gene
sequences of HGE agent and E. equi isolates from northern
California. These results suggest that E. equi and the HGE
agent found in California are similar or identical but may differ from
the isolates of equine and human origin found in the eastern United States.
 |
INTRODUCTION |
Human granulocytic ehrlichiosis
(HGE) is a severe or potentially fatal rickettsial infection which is
emerging in the upper midwestern and northeastern United States
(1, 3, 5). The disease is characterized by fever, severe
headaches, and myalgia, as well as occasionally other signs, including
respiratory compromise, gastrointestinal disturbance, organ failure,
and possibly increased susceptibility to opportunistic infections such
as candidiasis (6). There is a greater risk of severe
disease in older patients and the case fatality rate has been estimated
to be as high as 5% in some populations (7). HGE is caused
by an unnamed ehrlichial pathogen which is serologically and
morphologically indistinguishable from E. equi, the agent of
equine granulocytic ehrlichiosis (EGE) (14).
EGE typically presents as fever, dependent edema, icterus, and ataxia
(13). Infections were initially described in horses in
northern California but are also found throughout the United States in
habitats infested with the tick vectors Ixodes pacificus west of the Rocky Mountains and I. scapularis in the eastern
United States (4, 11). The same ticks have been found to be
vectors of the HGE agent. Experimental inoculation of horses with the HGE strain produced a clinical syndrome which was indistinguishable from naturally occurring EGE (16).
We and others have hypothesized that the agent of HGE is in fact
Ehrlichia equi. This hypothesis was tested in the current study by comparing the sequences of three genes from horse isolates and
two recent human cases in northern California (8).
 |
MATERIALS AND METHODS |
Field samples.
Table 1 shows
the origins of the E. equi isolates obtained from
Sierra, Mendocino, Sonoma, and Marin counties and the HGE agent
isolates obtained from Humboldt county (8) in
California (Fig. 1). Briefly, Lily
(CAMELI) was a 12-year-old quarterhorse mare from Mendocino
county with icterus, petechial hemorrhages, lethargy, and a rectal
temperature at the time of examination of 41.7°C. Lea Jubilee
(CASOLJ) was a 10-year-old mare with mild edema bilaterally at the
cannon-fetlock region, fever, icterus, and slight petechiae apparent on
the vaginal mucosa and sclera. E. equi morulae were observed
in a buffy coat smear stained with Giemsa. Clinical hematology
indicated thrombocytopenia, anemia, and leukopenia. Blood samples from
the remaining horses with clinical signs of EGE were collected during
1996 to 1998 in northern California. The blood samples were tested for
E. equi by 16S rRNA nested PCR (6), and the DNA
samples were stored until use. Samples from the human patients were
obtained 1998 as described previously (8).

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FIG. 1.
Map of California showing the counties where equine and
human isolates were collected for PCR to detect E. equi
( ) and HGE agent ( ).
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|
DNA preparation.
Genomic DNA was extracted from the buffy
coat ACD-anticoagulated whole blood of horses as previously described
(4). Briefly, the buffy coat was removed after
centrifugation and kept at
20°C overnight. The erythrocytes in the
buffy coat were lysed by adding 6 ml of 0.2% NaCl for 5 min and then
adding 6 ml of 1.2% NaCl. The cell mixture was washed with
phosphate-buffered saline, and the final pellet was diluted in 50 to
200 µl of lysis buffer (10 mM Tris-HCl, pH 8.3; 0.45% NP-40, 0.45%
Tween 20, 100 µg of proteinase K per ml) and incubated in a 56°C
water bath for 3 h. Finally, the DNA samples were incubated at
97°C for 15 min for inactivation of proteinase K and denaturation.
The isolation of DNA from EDTA-anticoagulated blood from human cases
was as previously described by Foley et al. (8). Briefly,
DNAs were extracted from 100 µl of whole blood by using lysis buffer
(10 mM Tris-HCl, pH 8.0; 1 mM EDTA; and 1% [wt/vol] sodium dodecyl
sulfate) at 37°C for 1 h. The lysate was incubated at 37°C for
30 min with RNase A (10 µg/ml) and then incubated overnight at room
temperature with proteinase K (50 µg/ml). Genomic DNAs were
purified with use of Phase Lock Gel I Light (5 Prime
3 Prime,
Boulder, Colo.). The positive control for PCR was BDS strain HGE agent
(2); the negative control DNA was obtained from an E. equi-free horse.
PCR amplification.
The nested-PCR amplification for 16S rRNA
gene fragment was done as previously described (4) (Table
2). Outer primers were used EE1 and EE2
for the first-round product (1,433 bp) and inner primers were used EE3
and EE4 for second-round product (928 bp). Primers EE5F and EE6R were
designed to obtain an additional 517-bp fragment at the 3' end of the
16S rRNA gene (Table 2). The forward primer LA6 and reverse primer LA1
were used to amplify the 444 Ep-ank gene fragment in the
ankyrin repeat region (Table 2) (P. Caturegli, K. Asanovich, J. Walls,
J. Bakken, J. Madigan, and J. Dumler, submitted for publication).
Cycling conditions were denaturation for 4 min at 94°C, followed by
94°C for 30 s, 62°C for 30 s, and 72°C for 30 s.
The annealing temperature was stepped down four times by 2°C every
two cycles. The final annealing temperature used was 54°C for 28 cycles, followed by a final extension for 5 min at 72°C.
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TABLE 2.
Primer sequences for PCR and sequencing of 16S rRNA, 444 Ep-ank and groESL heat shock operon
genes of the E. phagocytophila genogroup
|
|
The PCR primers EEgro1F and EEgro2R (Table
2) for amplification of the
groESL heat shock operon of the
Ehrlichia
species
were designed from conserved regions on the basis of a multiple
sequence alignment of
groESL heat shock operon
sequences from
GenBank database (accession numbers
U96727,
U72628,
U96728,
AF033101,
U96735,
U96729, and
U96730). The PCR
conditions
were as described for the
Ep-ank gene, with a
final annealing
temperature of 55°C for 28 cycles. All PCRs were
performed in
a Thermal Cycler 480 (Perkin-Elmer Cetus, Norwalk,
Conn.), and
PCR products were visualized after 1.5% agarose gel
electrophoresis
with fluorescence of ethidium bromide under a UV
transilluminator.
Cloning and sequencing.
The 16S rRNA or groESL
gene amplicons were ligated into the plasmid vector pCR 2.1-TOPO and
TOP10 One Shot competent cells transformed according to the
manufacturer's recommendations (TOPO Cloning Kit; InVitrogen, San
Diego, Calif.). The recombinant clones were verified by colony PCR
amplification. Two clones of each isolate were arbitrarily chosen for
sequencing the forward and reverse strands. Plasmid DNA for sequencing
was prepared by using the Quantum Plasmid Miniprep Kit (Bio-Rad,
Hercules, Calif.) according to manufacturer's instructions. Amplicons
of 444 Ep-ank and the 3' end of 16S rRNA gene fragments were
prepared for direct sequencing by using the QIAquick PCR Purification
Kit (Qiagen, Hilden, Germany).
A primer complementary to the T7 promoter region of the plasmid vector
and a series of internal primers EE7F and EE8R for
the 16S rRNA gene
(Table
2), EEgro3F, EEgro4R, EEgro5F, and Eegro6R
for the
groESL heat shock operon (Table
2), were used for
sequencing
the complete forward and reverse strands according to the
protocol
with the ABI Prism Big Dye Terminator Cycle Sequencing Ready
Reaction
Kit with AmpliTaq DNA polymerase FS (Perkin-Elmer/ABI, Foster
City, Calif.) and a PE Biosystems Prism 377 DNA
Sequencer.
Nucleotide and translated amino acid sequence analyses.
The
sequence data were collected using ABI Prism Data Collection software
(version 2.1), and the sequence data were analyzed using ABI Prism
Sequence analysis software (version 2.1.1) and Chromas software
(version 1.51) (Technelysium Pty., Ltd., Mt. Gravatt Plaza, Queensland, Australia).
Sequence homology searches were made using the National Center for
Biotechnology Information (National Institute of Health)
BLAST network
service. Nucleotide sequences were translated to
amino acid sequence by
the ExPASy translation tool of the Swiss
Institute of Bioinformatics
(
http://expasy.hcuge.ch /tools/dna.html).
The nucleotide and
translated amino acid sequences were aligned
and compared by
using Multalin (version 5.3.3 [
14])
(
http://www.toulouse.inra.fr /lgc/multalin/multalin.html) and
edited by using the GeneDoc Multiple
Sequence Alignment Editor and
Shading Utility (version 2.3.000
[32]). Calculations
of sequence identities were performed by using
ALINE (GenStream,
Montpellier France;
http://www2.igh.cnrs.fr/home.html).
 |
RESULTS |
The 16S rRNA (two fragments of 928 and 517 bp), 444 Ep-ank (444 bp), and groESL (1,715 bp) genes were
amplified from 13 GE isolates; 11 E. equi isolates from
Sierra, Mendocino, Sonoma, and Marin counties; and two HGE agent
isolates from Humboldt county in California (Fig. 1 and
2). Amplicons of 6 of the 13 isolates (1 isolate from each county) were selected from E. equi and
compared with the two HGE agent isolates. The two HGE agent isolates
had identical 16S rRNA gene sequences (1,395 bp) and were identical to
the equine isolates from Mendocino and Marin counties. Two other equine isolates, CASITL and CASOLJ, have a C and G in nucleotide positions 34 and 180, respectively (Table
3). In comparison to the U.S. isolate
sequences, which have an A at position 40, European isolates from
horse, dog, cat, and human sources have a G at the same position. The
overall sequence homology in the 16S rRNA gene among E. equi, the HGE agent, and E. phagocytophila
is 99.9%.

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FIG. 2.
PCR amplicons of 16S rRNA (928 bp), 444 Ep-ank (444 bp), and groESL heat shock
operon (1,715 bp) genes from naturally infected with
granulocytic ehrlichiae in horses from Sierra (CASIGR, CASIPE, CASIJA,
CASICH, CASIRN, and CASITL), Mendocino (CAMEBS, CAMELI, and CAMEDO),
Sonoma (CASOLJ), and Marin (CAMAWI) counties, California, and
in a human from Humboldt county, California (CAHU-HGE1 and CAHU-HGE2).
M, Molecular marker; C, double-distilled water; P, positive HGE agent
control.
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TABLE 3.
Comparison of nucleotide sequence difference positions of
the 16S rRNA gene from the E. phagocytophila genogroup
|
|
The sequences of 444 Ep-ank from all four E. equi
isolates and both HGE isolates were 100% identical (Table
4). The 444 Ep-ank nucleotide
sequences from California isolates differed from the BDS strain
(GenBank accession number AF047897) from the eastern United States at
positions 326 and 398, leading to predicted amino acid changes at
positions 109 and 133 (Table 4). The California isolates differed
from the USG3 strain (GenBank accession number AF020521) (from
Rhode Island) in 16 nucleotide positions, leading to 9 predicted amino acid differences (Table 4).
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TABLE 4.
Comparison of nucleotide and translated amino acid
sequence difference positions of 444 Ep-ank from the
E. phagocytophila genogroup
|
|
The groESL heat shock operon gene sequences of
CASITL, CAMEBS, CAMAWI, and CAHU-HGE1 isolates were identical, but the
sequences from CASOLJ and CAHU-HGE2 isolates had four and two
nucleotide differences, respectively (Table
5). This nucleotide sequence difference
was not predicted to result in amino acid differences between
CAHU-HGE1 and CAHU-HGE2 but would result in expected
amino acid differences at three positions when compared with
CASOLJ. Similarly, up to 12 nucleotide differences were
detected in comparing these northern California isolates with other HGE
and E. phagocytophila isolates, but none except
CASOLJ would be predicted to alter amino acid translation
(Table 5).
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TABLE 5.
Comparison of nucleotide and translated amino acid
sequence difference positions of groESL heat shock
operon from the E. phagocytophila genogroup
|
|
 |
DISCUSSION |
We and others have suggested that the E. phagocytophila
genogroup is a tightly related group of strains of ehrlichiae that share tick vectors, cross host species, and should be differentiated primarily on the basis of geographical and not host species origin. There are numerous lines of evidence suggesting that the HGE agent is a
strain within this group.
The HGE agent is antigenically indistinguishable from E. equi by immunofluorescence assay and on Western blots (2,
7). The HGE agent and E. equi are geographically and
seasonally coincident and are transmitted by the same tick. They are
indistinguishable ultrastructurally, cause indistinguishable clinical
conditions in animal models (9, 12, 16), and are
cross-protective (19). Munderloh et al. (17)
reported that, based on PCR and immunocytology analyses, the EGE agent
isolated in tick cell culture was closely related or identical to the
HGE agent.
Evidence from genetic analyses of E. equi and HGE agent
strains supports the theory that the ehrlichiae are conspecific. Our group previously showed that there was variability in the DNA sequence
of the 16S rRNA gene among tick-exposed horses in California (18). Also, equine isolates in New England have 16S
rRNA gene sequences which are identical to the HGE agent
(14). Our present results indicate that the 16S rRNA gene
sequences from Mendocino (CAMEBS) and Marin (CAMAWI) county horse
isolates were identical to two HGE isolates. However, other isolates
had one nucleotide difference, and a previously isolated EGE from a
horse (Alice) in California (18) was identical to CAMEBS,
CAMAWI, and the two human isolates from California in the homologous
fragment sequences available for analysis. There was a suggestion that geographical origin could account for some of the observed variability, in that horse and human isolates from California and E. phagocytophila (ovine and caprine) from Scotland had an A in
position 40 (Table 3), but isolates of human, mice, and tick origin
from the eastern and middle United States had a G in that position.
However, DNA of horse, dog, cat, and tick origin from Europe also
contained a G at position 40. The microheterogeneity consisting of one
or two unique nucleotide changes among E. equi strains, HGE
agent, and E. phagocytophila strains suggests that it is not
possible to classify isolates solely on the basis of their 16S rRNA
gene nucleotide sequences.
Comparison of DNA sequences of the groESL operon in
the E. phagocytophila genogroup also indicated that
variability was associated with geographic origin. In a previous study
which also examined groESL variability, found slightly more
variability was found in the 16S rRNA gene and European origin isolates
tended to differ from isolates from the United States (21).
DNA sequencing of the 444 Ep-ank gene also revealed that the
E. equi and HGE agent isolates from northern California were
identical but that California isolates differed significantly from the
eastern U.S. BDS and NCH-1 strains. Moreover, there was predicted
protein diversity in this gene product between western and eastern U.S.
isolates. Another reasonable target for genetic analysis would be the
44-kDa major outer membrane protein of the HGE agent and E. equi (22).
These results for 16S rRNA and for 444 Ep-ank and
groESL heat shock operon gene sequences suggest that
the CAHU-HGE1 isolate and E. equi strains from Mendocino and
Marin counties are invariant and that at least some HGE agent strains
are conspecific with E. equi. However, the species
designation should also incorporate data regarding infectivity or
pathogenicity, and such studies are incomplete. Experimental
manipulation of the equine model supports the hypothesis that HGE
isolates do not differ in pathogenicity from strains of E. equi (16).
Our results indicate that the HGE agent and E. equi are
conspecific, which is a very important finding because the risk of HGE
to humans cannot be adequately evaluated without considering infections
in domestic animals. HGE is an emerging infection in people, partly
because of increased scrutiny, and yet E. equi is well
established, suggesting that the banks of tick vectors in areas where
horse, dog, and hoofstock disease is endemic are contaminated and pose
risks to people in the area. In a seroepidemiological survey in 1985 and 1986 for E. equi in northern California, 10.4% of 335 horses were found to be positive for antibodies and 38 horses were
diagnosed as having EGE based on clinical signs and the observation of
inclusion bodies in neutrophils in blood smears (15).
Antibodies to E. equi have been detected in dogs from Oklahoma (20), the midwestern United States
(10), and California (J. Foley, unpublished data). Thus,
surveillance for human disease will need to incorporate dynamics of
infections in domestic animals as well.
 |
ACKNOWLEDGMENTS |
We thank Elfriede DeRock, University of California, Davis, for
technical assistance throughout this study.
This work was supported in part by grant A14213 from the National
Institutes of Health.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Medicine and Epidemiology, School of Veterinary Medicine, University of
California, Davis, CA 95616. Phone: (530) 752-1363. Fax: (530) 752-0414. E-mail: jemadigan{at}ucdavis.edu.
 |
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Journal of Clinical Microbiology, April 2000, p. 1364-1369, Vol. 38, No. 4
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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