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Journal of Clinical Microbiology, April 2000, p. 1375-1381, Vol. 38, No. 4
The Rockefeller University, New York, New
York,1 and National University Hospital,
Reykjavik, Iceland2
Received 29 October 1999/Returned for modification 24 December
1999/Accepted 22 January 2000
Since their first detection in 1988, penicillin-resistant
Streptococcus pneumoniae isolates have rapidly spread in
Iceland to account for close to 20% of all pneumococcal disease in
that country by 1993. The major component (70%) of the resistant
pneumococci identified from 1989 to 1992 was the progeny of a single
multidrug-resistant clone (Icelandic clone) with a homogeneous
chromosomal macrorestriction profile and identical multilocus enzyme
type expressing serotype 6B and resistance to penicillin, tetracycline,
chloramphenicol, erythromycin, and trimethoprim-sulfamethoxazole. The
rest of the non-penicillin-susceptible isolates included bacteria with
serotype 6A and serogroups 19 and 23. The unique geographic and
epidemiological setting and the availability of a complete collection
of all non-penicillin-susceptible isolates of S. pneumoniae
in Iceland prompted us to carry out a molecular epidemiological study
to monitor the fate of the Icelandic clone between 1989 and 1996; in
addition, we wished to extend the characterization to representative
groups of all non-penicillin-susceptible serotype 6B pneumococci which
showed variations in antibiotype and which were recovered in Iceland
between late 1989 and the end of 1996. Also included in the study were
non-penicillin-susceptible isolates of serogroup 23. Pulsed-field gel
electrophoresis of SmaI-restricted chromosomal DNA and
Southern hybridization with the lytA DNA probe and probes
specific for antibiotic resistance genes were used to characterize
pneumococcal isolates. The results show that (i) the Icelandic clone
remained the predominant type among penicillin-resistant S. pneumoniae through 1996; (ii) the emergence of variants of the
Icelandic clone which had lost one or more of the antibiotic resistance
phenotypes and/or resistant genes, singly or in combination, was
documented during the surveillance period; and (iii) isolates belonging
to the internationally spread multidrug-resistant serotype 23F clone
were present in the Icelandic collection since late 1989 but did not
increase in number during the subsequent years.
The rapid spread of
penicillin-resistant and multidrug-resistant Streptococcus
pneumoniae across the world has been well documented (1). The import and spread of international
multidrug-resistant clones to various countries in South America
(6, 7, 8, 12, 21, 28) and the United States (9)
and the introduction of a single multidrug-resistant clone that was
first identified in Iceland in 1989 (25) are prime examples.
The ability of pneumococci to acquire resistance genes through natural
transformation, even from other species, is also well known (10,
11, 16). The excessive use of antimicrobials agents applies the
selective pressure that maintains strains harboring these resistance
genes once introduced into communities (2, 3, 4). In the
wake of this global spread, measures to reduce the use of antimicrobial
agents have been cited as an important factor in fighting increasing
resistance. Recent reports described the success of such measures in
reducing the number of resistant strains among disease-causing isolates (23; K. G. Kristinsson, M. A. Hjalmarsdottir, and T. Gudnason, Abstr. 38th Intersci. Conf.
Antimicrob. Agents Chemother., abstr. C-22, p. 74, 1998). Still, the
fact remains that as long as resistant clones are present in the
population, the resistance genes are available, and the threat of a
resurgence of resistance through the spread of strains harboring them
or horizontal transfer to previously susceptible strains is real.
Actual loss of resistance through deletion or inactivation of
resistance genes and subsequent stabilization of resulting susceptible
clones is a process that actually removes the resistance genes from the
gene pool, making them unavailable to future generations of susceptible
bacteria. This process, in a natural setting, has not been observed
until now, however. Information on how frequent this process is and how
stable and how "successful" the resulting susceptible clones are in
competition with the original multidrug-resistant clone is invaluable
in assessing the effectiveness of reduced antimicrobial agent usage as
a weapon in the fight against drug-resistant bacteria.
An extensive surveillance system for monitoring the antibiotic
resistance of S. pneumoniae has been in place in Iceland
since the early 1980s. This system has made it possible to closely
monitor penicillin-resistant pneumococci since their first appearance in the country in December 1988 (15). Molecular typing
established that the rapid increase in the frequency of
penicillin-resistant pneumococci was mainly due to the introduction and
spread of an international multidrug-resistant clone (Icelandic clone)
of serotype 6B (25) that, by 1992, accounted for over 70%
of all non-penicillin-susceptible isolates of S. pneumoniae
in Iceland (13). The phenotype of the clone includes
resistance to penicillin, tetracycline, chloramphenicol, erythromycin,
and trimethoprim-sulfamethoxazole (SXT). The remaining 30% of
non-penicillin-susceptible pneumococci identified in Iceland consisted
primarily of isolates of serogroups 19 and 23 and serotype 6A. In
addition, a number of strains of serotype 6B with antibiotic resistance
patterns different from that of the imported multidrug-resistant clone
have also been identified. The purpose of this study was to
characterize representative groups of these isolates with molecular fingerprinting techniques in order to clarify their relationship to one
another and to other genetic lineages of non-penicillin-susceptible pneumococci identified in surveillance studies in other countries.
Geography and population.
Iceland is a small island, about
104,000 km2, in the North Atlantic ocean. Its population of
only about 270,000 people makes it possible to screen all bacterial
isolates from patients for antimicrobial susceptibility. The Department
of Microbiology at the National University Hospital in Reykjavik,
Iceland, collects, retests, and stores all isolates with reduced susceptibility.
Bacterial isolates.
All pneumococci isolated from patients
in Iceland are routinely tested for susceptibility to various
antimicrobial agents using the Kirby-Bauer method and National
Committee for Clinical Laboratory Standards criteria (29).
Resistance to penicillin is screened by disk diffusion tests with
oxacillin disks. Non-oxacillin-susceptible isolates are referred to the
Department of Microbiology, National University Hospital, where the
susceptibility pattern is confirmed and the strains are serotyped and
then stored at
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Molecular Evolution in a Multidrug-Resistant
Lineage of Streptococcus pneumoniae: Emergence of
Strains Belonging to the Serotype 6B Icelandic Clone That Lost
Antibiotic Resistance Traits
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
70°C. In this study, isolates from the same
individual were considered repeat isolates if they were identical and
recovered with an interval of less than 30 days and were excluded. A
complete collection of all non-penicillin-susceptible isolates of
S. pneumoniae in Iceland is available for study. In
addition, penicillin-susceptible isolates found to be resistant to
three or more antimicrobial agents, i.e., multidrug resistant, were
collected. A total of 1,311 isolates were collected from 1989 to 1996, and of those, 1,017 were of serotype 6B.
PFGE. Preparation of chromosomal DNA and pulsed-field gel electrophoresis (PFGE) were performed as previously described (25).
Analysis of PFGE patterns. Analysis of PFGE patterns was done by visual inspection of photographs of ethidium bromide-stained gels. Isolates sharing identical PFGE patterns were considered to belong to the same PFGE type (clone) and were identified by an arbitrarily assigned uppercase letter. Isolates that differed from such a type in up to three bands were considered to be subtype variants and were identified by numerical subscripts to the same uppercase letter (27).
DNA hybridization. The restriction fragments from the PFGE analysis were transferred to nylon membranes and probed using the ECL system (Amersham). Probes were labeled according to the manufacturer's guidelines and hybridized to the membrane-bound DNA, and chemiluminescence was detected by exposure on film. Probes for the tetracycline resistance gene tetM and the erythromycin resistance gene ermB were generated as described by Marchese et al. (17). A DNA probe for the lytA gene, recently identified as a useful epidemiological marker (20), was also used to further confirm strain identity.
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RESULTS |
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A total of 69 serotype 6B S. pneumoniae isolates
recovered from clinical samples in Iceland between 1989 and 1996 were
analyzed by microbiological and molecular techniques (Table
1). Classifying isolates only by
phenotype (i.e., serotype and antibiotype) proved inaccurate, since
some bacteria sharing common serotype and susceptibility patterns were
genetically heterogeneous, as indicated by their completely different
PFGE patterns. On the other hand, genotyping by PFGE combined with the
results of DNA hybridization, serotyping, and antibiotic susceptibility
pattern testing provided a powerful method for tracking changes in
individual clones.
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Evolution of the S. pneumoniae Icelandic clone
recovered from patients between 1989 and 1996.
Among the 69 serotype 6B isolates examined, a total of seven PFGE types were
identified on the basis of SmaI restriction patterns (see
patterns A, B, C, E, F, G, and R in Table 1). The largest group,
composed of 41 isolates, shared the common PFGE type A or its subtype
variants characteristic of the original multidrug-resistant Icelandic
clone. These isolates also showed a unique set of four lytA-hybridizing bands of 341, 85, 80, and 55 kb (Fig.
1A and Table 1), except for isolate 203, where a single band difference which resulted in a shift of the largest
lytA-positive fragment to 370 kb was seen.
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(i) Group 1. Analysis with the molecular typing methods confirmed that the 13 serotype 6B isolates chosen from the 1993, 1994, and 1996 collection and expressing resistance to penicillin, tetracycline, erythromycin, chloramphenicol, and SXT were indeed representatives of the original Icelandic clone already identified as the dominant multidrug-resistant S. pneumoniae clone in Iceland between 1990 and 1993 (13, 25). These isolates continued to be recovered from various parts of the country.
(ii) Group 2. Four isolates recovered between 1992 and 1994 (the first isolates obtained in April 1992) had lost resistance to tetracycline. These isolates were identical to the original Icelandic clone in PFGE type and lytA, ermB, and tetM hybridization pattern but tested phenotypically susceptible to tetracycline, in spite of the strong hybridization signal they gave with the tetM DNA probe. All four isolates were recovered in northeastern Iceland.
(iii) Group 3. Six isolates, recovered in 1993, 1994, and 1996, were susceptible to both tetracycline and erythromycin and showed no hybridization signal when tested with the tetM and ermB probes (Fig. 1B and C). These six isolates had a deletion involving the loss of 25 to 30 kb of material from the largest SmaI fragment (Fig. 1A). All six isolates were recovered in Reykjavik.
(iv) Group 4. Five isolates recovered in 1993 with SmaI and lytA patterns identical to those of the original Icelandic clone appeared to have lost phenotypic resistance to erythromycin in spite of the fact that they gave a strong signal with the ermB probe. All five patients lived within 1.5 km of each other in downtown Reykjavik, including two sisters residing at the same address and two other girls living across the street from each other.
(v) Group 5. A cluster of 12 isolates recovered in 1996 had the same SmaI and lytA patterns as the imported Icelandic clone but were susceptible to chloramphenicol. It remains to be determined if their susceptibility is due to the inactivation or loss of the cat (chloramphenicol acetyltransferase) gene. These isolates were all recovered in Reykjavik or surrounding towns.
(vi) Group 6. A single isolate recovered in 1996 was found to have "lost" resistance to tetracycline, erythromycin, and chloramphenicol. However, it retained the original PFGE pattern (A1), and Southern blots showed positive signals for all three resistance genes. This isolate was recovered in Reykjavik.
Recovery of new clonal types of serotype 6B S. pneumoniae with reduced susceptibility to penicillin from clinical specimens in Iceland between 1989 and 1996. Of the 69 serotype 6B S. pneumoniae isolates with reduced penicillin susceptibility analyzed, 41 isolates were relatives of the original Icelandic clone, while the remaining 28 isolates (see group 7 in Table 1) were represented by pneumococci with six distinct PFGE types (B, C, E, F, G, and R). Bacteria with PFGE type B were intermediately resistant to penicillin and susceptible to the other drugs and were recovered from 13 patients. This group was further divided into four subtypes based on single band differences in PFGE patterns. Of particular epidemiological interest are the three isolates in subgroup B3 and the single isolate in subgroup B4. Strains in subgroup B3 were isolated in late 1992 through the middle of 1993. Two were isolated from the same child residing at the University of Iceland student residences. The first of these was isolated in December 1992, and the second was isolated in June 1993. The third isolate was recovered from another child residing in the student residences at the same time as the first child. This finding indicates the presence of this particular clone at the university student day-care center over a period of at least 7 months. The single strain of subgroup B4 was isolated at the U.S. Naval Hospital on the Keflavik Navy Base, and although this subgroup is closely related to the group B isolates from Icelandic patients, it has not been identified outside the base.
For the nine isolates belonging to PFGE type C, the penicillin MICs ranged from 0.5 to 2.0 mg/liter, and the isolates were resistant to tetracycline, chloramphenicol, and SXT. The remaining six isolates were represented by four different PFGE patterns (E, F, G, and R). The penicillin MICs for these isolates ranged from susceptible to intermediately resistant values; all of the isolates were resistant to tetracycline, and all but one were resistant to erythromycin as well.Multidrug-resistant serotype 23F Spanish/U.S. clone identified in
Iceland.
PFGE analysis of the 54 serogroup 23 isolates that were
detected in Iceland between late 1989 and the end of 1996 showed that 10 of these, expressing serotype 23F, had PFGE profiles and
lytA hybridization patterns identical to those of the
international Spanish/U.S. clone (Fig.
3). The isolates were resistant to
penicillin, tetracycline, and chloramphenicol and were recovered during
the entire period, between late 1989 and the end of 1996, in the
Reykjavik area; the first isolate was identified in November 1989, i.e., the same year when the multidrug-resistant serotype 6B clone was first detected in Iceland.
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DISCUSSION |
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Many factors combine to make Iceland a unique location for studying the evolution and spread of antibiotic resistance and resistant clones. Being an island in the North Atlantic, the country is geographically isolated. A high standard of living, an excellent health care system, and active surveillance systems make it possible to keep track of changes in frequencies and levels of antibiotic resistance in bacteria. A population of less than 300,000 people results in manageable collections of isolates, and the application of molecular and microbiological typing techniques, such as the ones used in this communication, provides a method for tracking the evolution and diversification of individual clones.
Between 1989 and 1996, 1,311 non-penicillin-susceptible and/or multidrug-resistant pneumococci were recovered. Of these, 1,017 were serotype 6B, and the great majority (961, or 94%) shared the typical resistance pattern of the multidrug-resistant Icelandic clone. A group of these isolates, picked randomly from 1993, 1994, and 1996, indeed shares the molecular characteristics of the Icelandic clone. This finding demonstrates that the multidrug-resistant Icelandic clone originally imported into Iceland in 1989 has remained the dominant drug-resistant clone throughout the 1990s. Following the rapid expansion of this clone in the early 1990s, non-penicillin-susceptible pneumococci with serotype 6A and serogroups 19 and 23 were also detected in Iceland. These pneumococci had PFGE patterns different from that of the dominant 6B clone (unpublished data), thus ruling out capsular transformation of the multidrug-resistant 6B clone.
Perhaps the most interesting observation registered by Icelandic surveillance is the emergence of variants of the Icelandic clone in which one or more of the antibiotic resistance phenotypes have been lost. Such isolates were first detected in 1992, and between that year and 1996 a total of 28 serotype 6B isolates of S. pneumoniae clearly belonging to the Icelandic clone on the basis of their chromosomal PFGE and lytA patterns showed differences in antibiotype from the Icelandic clone. Among these, four isolates became phenotypically tetracycline susceptible without losing reactivity to the tetM gene, as indicated by the strong hybridization signal. Another group of six isolates became susceptible to both tetracycline and erythromycin. They no longer hybridized with the ermB and tetM probes; this result appeared to be related to a deletion of 25 to 30 kb from the SmaI fragment characteristically hybridizing with the ermB and tetM DNA probes in the case of the original Icelandic clone. The size of the deletion indicates the possible loss of a transposon carrying the resistant determinants (10), and these isolates are currently under further investigation. Five isolates became phenotypically susceptible to erythromycin but still gave a strong signal with the ermB probe, a cluster of 12 isolates became susceptible to chloramphenicol, and 1 isolate lost resistance to tetracycline, chloramphenicol, and erythromycin. The mechanisms of loss and/or inactivation of resistance genes observed in these isolates are not yet understood.
One may consider these antibiotype variants of the Icelandic clone as products of an evolutionary process that has taken place in the in vivo environment of S. pneumoniae since the introduction of the multidrug-resistant clone to Iceland. The epidemiological features of these variants indicate that the loss of the antibiotic resistance phenotype did not interfere with the capacity of the strains to survive and even undergo a limited degree of spread, suggesting that these strains have retained at least some degree of competitiveness in spite of the loss of one or more antibiotic resistance traits. For instance, the six tetracycline- and erythromycin-susceptible isolates with the deleted ermB and tetM genes were isolated over a period of 4 years. Infection of several patients and/or carriers over intervals of several years was also documented for the four tetracycline-susceptible strains carrying the inactivated tetM gene. The five erythromycin-susceptible isolates with the inactivated ermB gene were also recovered from a number of patients over more than 6 months. The emergence and modest but significant spread of these variants of the Icelandic clone with reduced antibiotic resistance profiles may be a reflection of the reduction in antimicrobial agent consumption that was initiated by the publicity urging physicians and the general public to use antimicrobial agents prudently (14). The first isolate with such a reduced antibiotype (tetracycline susceptibility) was detected in April 1992, i.e., shortly after the campaign for a reduction in antibiotic prescriptions began. Methods to eradicate or silence antibiotic resistance genes are not currently available (22), but an environment with reduced amounts of antimicrobial agents should allow the survival of strains in which one or more of the antibiotic resistance genes are lost or inactivated through a spontaneous evolutionary process. The emergence of such less resistant variants among members of a multidrug-resistant clone may be an unexpected benefit of more prudent antimicrobial agent use.
The success of the Icelandic clone is particularly impressive
considering that another multidrug-resistant S. pneumoniae
clone, the serotype 23F Spanish/U.S. clone, which was detected in
Iceland as early as 1989, has failed to spread, even though a few
strains have continued to be recovered in each of the subsequent years (Table 2). Reasons for the failure of the
Spanish/U.S. clone to expand in Iceland is surprising, since this clone
represents the single most "successful" pneumococcal clone in terms
of its geographic spread and high degree of representation among
clinical isolates in many other countries (5, 9, 17, 24, 26, 28). The factors determining the success of particular clones could relate to particular antimicrobial drug usage patterns in the
community or the relative immunity of the population to the various
surface antigens of individual clones.
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Despite the appearance of new variants, the Icelandic clone has remained remarkably stable during the 7 years of study. Its continued superiority over other resistant clones may provide clues as to what factors are important for the epidemicity of a pneumococcal genetic lineage.
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ACKNOWLEDGMENTS |
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Molecular characterization of the S. pneumoniae isolates was performed at The Rockefeller University, supported by grants from the National Institutes of Health (grant NIH RO1 AI37275) and the Lounsbery Foundation. K.G.K. and S.E.V. received grants from the Icelandic Research Council, The Research Fund of the University of Iceland, and the Scandinavian Society for Antimicrobial Chemotherapy.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Microbiology, National University Hospital, P. O. Box 1465, 121 Reykjavik, Iceland. Phone: (354) 560 1952. Fax: (354) 560 1957. E-mail: karl{at}rsp.is.
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