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Journal of Clinical Microbiology, September 2000, p. 3249-3253, Vol. 38, No. 9
Institut für Medizinische Mikrobiologie
und Immunologie,1 Klinik und Poliklinik
für Urologie,2 and Abteilung
für Transfusionsmedizin,3
Universitätsklinikum Hamburg-Eppendorf, Hamburg, Germany
Received 28 December 1999/Returned for modification 25 April
2000/Accepted 22 June 2000
Positive results by cytomegalovirus (CMV) PCR of plasma are
considered predictive of active CMV infection in kidney allograft recipients. To assess whether contamination with leukocyte-derived CMV
DNA can distort the results, aliquots of whole-blood samples from 60 CMV immunoglobulin G-positive patients with leukocyte CMV
DNAemia were stored for up to 24 h at room temperature
(RT) and at 4°C before plasma preparation. Native and ultrafiltered plasma samples were tested by CMV and The presence of cytomegalovirus
(CMV) DNA in blood as detected by PCR is used to monitor transplant
patients at risk of active CMV infection (for reviews, see references
1 and 16). Both peripheral blood
leukocyte (PBL) and plasma fractions are used for CMV PCR, but the
clinical significance of results varies and is dependent on the PCR
approach. By quantitative PCR techniques, demonstration of high-level
CMV leukocyte DNAemia and plasma DNAemia usually precedes
the development of clinical features. Although levels of
leukocyte DNAemia and plasma DNAemia are
usually well correlated, CMV DNA load is considerably higher in PBLs,
which can reasonably be explained by the strong cell association of the
virus (2, 6, 18, 22). As the performance of quantitative PCR
is technically demanding and cost-intensive, which limits its
high-throughput use, qualitative CMV PCR assays with reliable significance remain desirable. Leukocyte DNAemia, however, is often detected in CMV immunoglobulin G (IgG)-positive patients with no
further evidence of active CMV infection, whereas a positive CMV PCR
with plasma has been reported to be more specifically associated with
clinical manifestations (1, 16).
Despite the important diagnostic role of CMV plasma DNAemia,
its biological properties are not fully understood. One notion is that
it reflects active virus replication (20-22). On the other hand, the high abundance of CMV leukocyte DNAemia in actively CMV-infected patients has led to the hypothesis that plasma
DNAemia may be, at least partly, a result of PBL lysis
(6, 22). If cell turnover was a major mechanism that elicits
CMV plasma DNAemia, this would suggest that in patients with
CMV leukocyte DNAemia long-term storage of whole blood
samples before separation may cause release of viral DNA into the
plasma fraction, thus distorting PCR results. This question is of great
importance not only in the clinical setting but also for test
reproducibility and standardization, especially since commercial kits
for CMV PCR of plasma samples are available (3, 10). Some
investigators argue that contamination of freshly prepared plasma
fractions with cellular DNA can be overcome by ultrafiltration, whereas
others have reported that PCR for cellular target sequences is
regularly positive even with ultrafiltered samples (6, 20,
21). None of these investigations, however, tested the effect of
delays in sample processing under controlled conditions. This problem
has been addressed in the present study.
Patients.
The blood samples from kidney allograft recipients
investigated in this study were obtained between days 18 and 66 posttransplantation. Sixty CMV IgG-positive recipients with CMV
leukocyte DNAemia were enrolled in the study. Of these, 30 patients were latently infected with CMV and 30 experienced active CMV
infection (see below for definitions). Of the latently infected
patients, 19 received a graft from a CMV-seronegative donor; 21 of the
donors among the recipients who became actively infected with CMV were
seronegative. Ten CMV IgG-positive patients without leukocyte
DNAemia (seven donors were seronegative) and five CMV
IgG-negative patients (all five donors were seronegative) served as
controls. To rule out factors apart from the storage conditions which
might influence CMV PCR results, patients receiving antiviral therapy
at the time of the investigation were excluded.
0095-1137/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
False-Positive Results of Plasma PCR for
Cytomegalovirus DNA due to Delayed Sample Preparation
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-globin PCRs. Among 30 latently infected patients (negative for CMV pp65 antigens), low baseline rates (10%) and levels (median number of copies, 10 [per 10 µl]) of CMV plasma DNAemia in native plasma samples
increased significantly over time (after 4 h at RT, 37%
[P < 0.001]; median number of copies, 45 [P < 0.001]). Similar effects were found during
storage at 4°C. Ultrafiltration reduced the levels of CMV plasma
DNAemia, but by 6 h of storage the levels were
significantly elevated as well. CMV and
-globin DNA kinetics in
plasma were parallel. In contrast, 30 actively infected patients (pp65
positive) had high baseline rates (87% in native samples) and levels
(median number of copies, 75) of CMV plasma DNAemia. No
significant effects of storage or ultrafiltration and no concordance
with
-globin DNA kinetics were seen. In conclusion, delayed
preparation of plasma samples bears a significant risk of
false-positive CMV PCR results, probably due to leukocyte lysis. This
has important implications in the clinical setting and for PCR standardization.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
Blood sample processing. Twenty milliliters of whole blood was freshly collected from each participant and placed into tubes that contained EDTA. One-milliliter aliquots were prepared immediately postdrawing. One aliquot was processed right away for baseline PCR of PBLs and plasma, and one was used for the antigenemia assay (see below). The remaining unprocessed sample aliquots were stored at room temperature (RT) and at 4°C. From these, PBLs and plasma were prepared for PCR analysis after storage for 2, 4, 6, 12, and 24 h.
For each aliquot plasma was separated from blood cells by centrifugation at 700 × g for 10 min. Supernatants were centrifuged for a second time to pellet the cell debris. Half of each supernatant (approximately 500 µl) was then sterile filtered through a 0.2-µm-pore-size filter (Millipore, Eschborn, Germany). The supernatants of the ultrafiltered and native plasma samples were extracted with 1 volume of phenol-chloroform and subsequently with 1 volume of chloroform-isoamyl alcohol (24:1). DNA from 100 µl of the aqueous phase was precipitated with 0.1 volume of sodium acetate (pH 5.2) and 2.5 volumes of absolute ethanol. After centrifugation at 15,000 × g for 30 min, the pellets were washed with 70% ethanol and resuspended in 100 µl of H2O. A 10-µl sample was subjected to PCR. PBLs were obtained by treating the pelleted cells with 0.8% ammonium chloride for erythrocyte lysis. The PBLs were washed with phosphate-buffered saline (pH 7.4) and quantitated with a hematological cell counter. DNA was extracted from 5 × 105 PBLs by digestion with 100 µg of proteinase K per ml (11, 14) in a 50-µl reaction volume. After being boiled for 10 min, a 10-µl sample of the supernatant was subjected to PCR.PCR assays.
CMV DNA was quantitated in all leukocyte and
plasma extracts. To assess the role of cell lysis, samples were
additionally tested for the single-copy human
-globin gene. Target
sequences were quantitated by competitive PCR with cloned standard (ST) sequences as described previously (11, 14), with slight
modifications. The CMV ST sequence was generated in a PCR by
site-directed mutagenesis and was subcloned into the vector pSPT19
(Boehringer Mannheim, Mannheim, Germany) (14). It contained
three successive point mutations within the amplified coding region of
CMV glycoprotein B compared to the sequence derived from laboratory
strain AD169 (4). The cloning of the
-globin ST sequence
was described previously (9).
-globin ST sequence and
either 1 × 103 copies (high-ST) or 50 copies (low-ST)
of the CMV ST sequence. CMV target sequences were amplified for 20 cycles with the external CMV-specific primers E1
(5'-TCCAACACCCACTAGACCGGT-3') and E2
(5'-CGGAAACGATGGTGTAGTTGG-3'). Ten microliters of each of
the external reaction mixtures was reamplified in a second round of PCR
for 30 cycles with the internal CMV-specific primers TGGE1B
(5'-CCGGATCCCGCCGCCCGCCCCGCGCCCGCCGCGGCAGCACCTGGCT-3') and TGGE2E (5'-GCGAATTCGTAAACCACATCACC GTGGA-3') and
the
-globin-specific primers 1aB
(5'-CCGGATCCCGCCGCCCGCCCCGCGCCCCTGCCGTTACTGCCCTGT-3') and
1bE (5'-GCGAATCCTATTGGTCTCCTTAAACCTG-3'). The ST sequence and wild-type CMV and
-globin PCR amplimers were quantitated by
hybridization to a strand-specifically labeled ST sequence, separation
by temperature gradient gel electrophoresis, and densitometric analysis
of autoradiographs (14). For samples with
500 CMV DNA
copies in 10 µl, the figures from the high-ST reaction were used, and
for samples with <500 CMV DNA copies, those from the low-ST reaction
were used. Results were expressed as the average value of two
measurements, which differed by
15% (data not shown). Exact
quantification was possible within the ranges of 5 to 1 × 104 CMV wild-type genome equivalents and 2 × 103 to 2 × 105
-globin copies per PCR
mixture. In PBLs, CMV DNA/cellular DNA ratios were expressed as the
number of CMV DNA copies/2 × 105 copies of
-globin
DNA (the theoretical maximum DNA yield from 105 cells).
Plasma CMV and
-globin copy numbers were expressed as the genome
equivalents present in 10 µl of plasma (approximately equivalent to
the volume of whole blood containing 105 PBLs).
Antigenemia assay. Aliquots of 105 PBLs obtained from freshly prepared sample aliquots were centrifuged in duplicate onto glass slides, fixed, and permeabilized with 5% paraformaldehyde-0.5% Nonidet P-40, and pp65 antigens were detected in polymorphonuclear cells by indirect immunofluorescence as described previously (5) by using Clonab CMV (Biotest, Dreieich, Germany) according to the manufacturer's instructions.
Statistical analyses.
The frequencies of positive results of
the CMV PCR and the
-globin PCR for the plasma samples were compared
between different groups by the
2 test. The frequencies
of positive
-globin PCRs were compared between CMV PCR-positive and
CMV PCR-negative samples of the same groups by the McNemar test.
Quantities of CMV and
-globin target sequences were compared (i) in
PBLs and in plasma over the storage period by the Friedman test
combined with the Wilcoxon rank test, (ii) in PBLs and in
plasma between actively and latently CMV-infected patients by the Mann-Whitney U test, and (iii) between native and
ultrafiltered plasma samples also by the Mann-Whitney U test. The
correlation of the number of CMV DNA copies in PBLs with those in
plasma fractions was determined by Spearman regression analysis.
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RESULTS |
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The effects of storage time and ultrafiltration on PCR results presented here were found to be independent of the storage temperature. Therefore, detailed data are shown only for sample aliquots stored at RT.
Qualitative CMV PCR of plasma.
The influence of storage time
and ultrafiltration on plasma CMV PCR results for the samples from 60 patients with leukocyte DNAemia (30 were latently CMV
infected, and were 30 actively infected) is depicted in Fig.
1. At the baseline, among the native
plasma samples only 10% from the latently CMV-infected group but 87% from the actively infected patients were CMV PCR positive (P < 0.001). Similar observations were made with the ultrafiltered plasma samples (3% positive for latently infected patients and 80%
positive for actively infected individuals [P < 0.001]). In actively CMV-infected patients, the total rates of
positive CMV PCRs did not increase significantly over the storage
period, and no differences in the overall frequencies of positive CMV
PCRs were evident between native and ultrafiltered samples. In
contrast, among patients with latent CMV infection, the frequency of
positive CMV PCR results was significantly higher than the baseline
value by 4 h for native plasma samples (37% [P = 0.033]) and by 6 h for ultrafiltered samples (27%
[P = 0.03]). The differences between actively and
latently infected patients in the frequencies of positive CMV PCRs lost
statistical significance by 12 and 24 h of storage regarding
native and ultrafiltered plasma specimens, respectively.
|
-globin PCR results were additionally analyzed
(Fig. 1). Different observations were made for latently and actively
CMV-infected individuals. First, for latently infected patients, all
CMV PCR-positive samples (native as well as ultrafiltered) were also
-globin PCR positive by 2 h postdrawing. In contrast, for
patients with active CMV infection, the vast majority of CMV PCR-positive samples were
-globin PCR negative at the baseline, and
for the ultrafiltered CMV PCR-positive aliquots, the
-globin PCR
was negative significantly more frequently until at least 6 h of storage (P < 0.001). Second, for latently
infected patients ultrafiltration significantly decreased the rates of
positivity of the CMV PCR compared with those for native samples at
4 h (P = 0.033), 6 h (P = 0.036), and 12 h (P = 0.034) of storage. In contrast, for the actively CMV-infected patients, ultrafiltration did
not reduce the overall rates of CMV PCR positivity but decreased only
the proportion that was also
-globin PCR positive (4 h, P < 0.001; 6 h, P = 0.004; 12 h,
P = 0.002). The overall rates of positivity of the
-globin PCR for native and ultrafiltered plasma sample aliquots did
not differ significantly between latently and actively CMV-infected
patients over the storage period (data not shown).
Only 2 of the 29 native plasma samples (3 from patients latently
infected with CMV and 26 from patients actively infected with CMV)
which were CMV PCR positive at the baseline became PCR negative in the
course of storage. All plasma sample aliquots derived from the
control patients without CMV leukocyte DNAemia remained CMV
PCR negative throughout the storage period. For the samples from
these patients, no differences in the overall rates of positivity of
the
-globin PCR were seen compared with those for the corresponding
samples from the patients who had CMV leukocyte DNAemia (data
not shown).
Quantitative CMV PCR of plasma.
To further analyze the data
obtained by qualitative PCR, the kinetics of CMV DNA and
-globin DNA
were determined in all PBL and plasma sample aliquots over the storage period.
-globin DNA) than in patients with latent
CMV infection (median, 45 copies [P < 0.001]).
In actively CMV-infected patients, the ratio of CMV DNA levels in
PBLs/CMV DNA levels in plasma (related to equivalent sample volumes) at
the baseline ranged from 7.9 to 12.8 and from 8.2 to 13.1 for aliquots
of native and ultrafiltered plasma, respectively. A significant
correlation was found between the number of CMV DNA copies in PBLs and
the number in the corresponding plasma samples (baseline values for
native samples, Spearman regression coefficient
[rs] = 0.77 [P = 0.025];
baseline values for ultrafiltered samples, rs = 0.82 [P = 0.022]). These values remained virtually constant over the storage period. For latently CMV-infected patients, the ratios of the CMV DNA numbers in PBLs/CMV DNA copy numbers in
plasma did not exceed 2.5 (native plasma samples) and 1.9 (ultrafiltered aliquots) at the baseline. Furthermore, they dropped to
nearly 1.0 during storage (data not shown).
The kinetics of CMV DNA copies in plasma over the storage period are
illustrated in Fig. 2. The numbers of CMV
DNA copies detected in latently CMV-infected patients were
significantly lower than the numbers detected in actively infected
patients throughout the storage period. During storage, no relevant
changes in CMV DNA copy numbers occurred in samples from patients with active CMV infection. In contrast, among the latently infected patients, the CMV copy numbers strongly increased during storage, and
the differences from the baseline values became statistically significant after 4 h for native samples (P < 0.001) and 6 h for ultrafiltered samples (P < 0.01), respectively. Ultrafiltration of plasma samples only
marginally decreased the CMV DNA copy numbers in actively infected
patients, whereas in the latently CMV-infected individuals, the CMV DNA
copy numbers were significantly lower in ultrafiltered samples than in
native samples after storage times of
4 h (4 h, P < 0.001; 6 h, P < 0.001; 12 h,
P < 0.01; 24 h, P < 0.01).
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-globin DNA copy numbers in native plasma samples reached about
5%, on average (mean, 9 × 103 copies in 10 µl), of
the values determined in the corresponding PBL aliquots during the
storage period. By storage times of
4 h the
-globin copy numbers
measured after ultrafiltration were significantly lower compared with
the numbers in aliquots of native plasma. No significant differences in
-globin DNA copy numbers were observed between the corresponding
samples from patients with CMV leukocyte DNAemia and control
patients at any time during storage (data not shown).
In PBL fractions of actively infected patients, CMV DNA and
-globin
DNA copy numbers decreased slightly over the storage period, but the
differences from the baseline values did not reach statistical
significance. However, a significant decrease in CMV DNA copy numbers
was noted for samples from latently CMV-infected patients (P < 0.01 after 6 h). No significant differences in
-globin DNA copy numbers were observed between the corresponding samples from
patients with CMV leukocyte DNAemia and control patients (data not shown).
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DISCUSSION |
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In latently CMV-infected renal allograft recipients CMV PCR performed with plasma yields false-positive results with significant frequency when specimens are prepared with delay, regardless of the storage temperature. In contrast, storage factors do not seem to have any relevant effect on the results of CMV PCR for patients with active CMV infection. These findings have important implications for the diagnostic significance of plasma PCR.
The presence of CMV leukocyte DNAemia proved to be necessary for positive plasma PCR results. As isolated CMV leukocyte DNAemia in transplant recipients is rated as a pathological condition per se by some investigators (1), it must be noted that in this study the definition of latent CMV infection in leukocyte DNAemia-positive patients ruled out any episodes of pp65 antigenemia, virus shedding from body fluids, or CMV-related symptoms during the stay at hospital. In contrast, truly active CMV infection was assumed only when pp65 antigenemia was confirmed, because the prognostic significance of CMV DNAemia is dubious in pp65-negative patients with other signs of virus activity, e.g., virus isolation from urine or throat swabs (11, 19).
Fundamentally different effects of storage on plasma CMV PCR were observed between plasma from latently and actively CMV-infected patients. The data suggest that lysis of latently infected PBLs is the driving force for CMV plasma DNAemia in patients with latent infection but that this does not play a key role in active CMV infection.
In latently infected leukocytes, CMV DNA has been localized to the cell
nucleus (7). Preanalytical turnover of these cells, with
nucleus-associated DNA entering the plasma fraction, provides a
reasonable explanation for the finding that the plasma CMV
DNAemia that was low grade at early storage times
continuously rose over time and strongly diminished with
ultrafiltration, in parallel with
-globin DNA levels in plasma.
Accordingly, low absolute CMV copy numbers in PBLs and low ratios of
CMV DNA in PBLs/CMV DNA in plasma gradually diminished over time.
Interpretation of the data for the actively infected patients is more
complex. Plasma CMV DNA representing cell-free target sequences
(6, 20, 21) is the most obvious explanation for the
high-grade plasma CMV DNAemia at the baseline which remained stable over time; therefore, it did not correlate with
-globin DNA
kinetics and was largely uninfluenced by ultrafiltration. Moreover, CMV
PCR-positive but
-globin PCR-negative samples were present
throughout storage. The notion of cell-free virus would fit reports on
the recovery of infectious virus from the plasma fraction (6,
20). The release of virus DNA into the plasma fraction from other
surrounding sites of infection (e.g., endothelial cells) is conceivable.
However, cell-free virus is not the only possible
explanation. The significant correlation of CMV DNA copies between
PBLs and plasma and the similar ratios of CMV DNA in PBLs/CMV DNA
in plasma throughout storage suggests that plasma DNAemia in
actively infected patients is also, to some extent, leukocyte
associated (6, 18, 22). This is not necessarily
contradictory to the statements made above because the CMV DNA
circulating in PBLs during active infection has been localized to the
cytoplasm (7) rather than the nucleus, most likely as a
result of virus uptake from surrounding sites of replication.
Accordingly, in actively infected patients CMV DNA and
-globin DNA
behaved consistently different in terms of ultrafiltrability. During
CMV dissemination there may be a steady state in the bloodstream
between the viral components present in the cytoplasms of cells and in
the plasma fraction, leading to a comparatively high plasma CMV
DNA load. Such a hypothesis could explain why, despite the high CMV DNA load in PBLs, the plasma CMV levels found at the baseline
increased only marginally during storage, although PBL lysis must have
resulted in the release of cytoplasmic CMV DNA.
Although samples of actively CMV-infected patients probably also contained CMV DNA derived from latently infected PBLs which entered the plasma over time, this was unlikely to have a great influence on the interpretation of the results because the levels of latent CMV DNA derived from PBLs (predominantly mononuclear cells) are very low in both actively and latently CMV-infected patients (18).
The
-globin PCR data may reconcile some discrepant previous
statements. Gerna et al. (6) regularly detected
-globin
DNA by qualitative PCR in plasma samples after ultrafiltration using a
highly efficient DNA extraction method. Others have reported the loss
of
-globin signals by ultrafiltration, but the investigators used a
proteinase K-based extraction protocol which refrained from DNA
precipitation (20, 21). Therefore, the most likely reason
for these discrepancies is the different sensitivities of the methods.
In agreement with this interpretation, quantitation of
-globin DNA
in our study revealed that only a limited amount of cellular material
was effectively ultrafiltered.
The preanalytical pitfalls of plasma CMV PCR may be overcome by alternative PCR approaches that are less error prone. First, qualitative CMV PCR of polymorphonuclear leukocyte fractions depleted of the mononuclear cells by Ficoll density centrifugation is promising for the monitoring of renal allograft recipients (18). Its specificity is comparable to that plasma PCR and it is even more sensitive than plasma PCR (15), and storage of unprocessed samples for at least 72 h has no effect on the results (17). Second, serum CMV PCR is supposed to be equivalent to plasma PCR for prediction of active infections (8, 13) and therefore should also be investigated for the adverse effects of delayed sample preparation.
In conclusion, it has been demonstrated that a mere positive CMV PCR result obtained with the plasma of a renal allograft patient with CMV leukocyte DNAemia should be interpreted with extreme caution. For quantitative CMV PCR delays in specimen processing are probably less crucial. It is urgently necessary to take notice of this matter in the clinical setting and when any measures for standardization of plasma CMV PCR procedures are devised.
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FOOTNOTES |
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* Corresponding author. Mailing address: Institut für Medizinische Mikrobiologie und Immunologie, Universitätsklinikum Hamburg-Eppendorf, Martinistr. 52, D-20246 Hamburg, Germany. Phone: (49 40) 42803-3157. Fax: (49 40) 42803-4881. E-mail: pschaefe{at}uke.uni-hamburg.de.
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