Previous Article | Next Article 
Journal of Clinical Microbiology, October 2001, p. 3520-3523, Vol. 39, No. 10
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.10.3520-3523.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Granulicatella and Abiotrophia
Species from Human Clinical Specimens
Jens Jørgen
Christensen1,* and
Richard R.
Facklam2
Department of Clinical Microbiology at
Statens Serum Institut, Copenhagen, Denmark,1
and The Streptococcus Laboratory, Respiratory Diseases Branch,
Division of Bacterial and Mycotic Diseases, Centers for Disease
Control and Prevention, Atlanta, Georgia2
Received 22 May 2001/Returned for modification 4 July 2001/Accepted 27 July 2001
 |
ABSTRACT |
One hundred one isolates of nutritionally variant streptococci from
97 patients were phenotypically characterized and compared with the
type strains of Granulicatella adiacens (formerly
Abiotrophia adiacens) (ATCC 49175T)
Abiotrophia defectiva (ATCC 49176T), and
Granulicatella elegans (formerly Abiotrophia
elegans) (DSM 11693T). Of the isolates, 55 and 43 resembled G. adiacens and
A. defectiva, respectively, while 3 strains resembled G. elegans. Phenotypic characteristics useful in differentiating between species within the
genera Granulicatella and Abiotrophia
(G. adiacens, G.
elegans, Granulicatella balaenopterae,
and A. defectiva) were production of
-
and
-galactosidase; production of
-glucuronidase; hippurate hydrolysis; arginine dihydrolase activity; and acid production from
trehalose, sucrose, pullulan, and tagatose. From the reports submitted
with the specimens, the clinical diagnosis was endocarditis in 58% of
patients and septicemia or bacteremia in 26% of patients.
 |
INTRODUCTION |
Nutritionally variant streptococci
(NVS) were originally described by Frenkel and Hirsch in 1961 (7) as a new type of streptococci exhibiting satellitism
around colonies of other bacteria. Isolates have been recovered from
blood, abscesses, oral ulcers, and urethral samples (15).
Because of both difficulties in culturing these organisms and the
variety of appearances that they present on primary detection, such
strains have caused major diagnostic difficulties. By DNA-DNA
hybridization studies, Bouvet et al. in 1989 (3) demonstrated that NVS isolates could be divided into two groups, Streptococcus defectivus and Streptococcus
adiacens; these two new species showed low DNA relatedness to
reference strains of other Streptococcus species. In 1995, a
new genus, Abiotrophia, was created, and the two species
were transferred hereto as Abiotrophia defectiva and
Abiotrophia adiacens (9). "Abiotrophia"
means life nutrition deficiency and refers to the species'
requirements for supplemented media for growth. Since then, three new
species have been added, Abiotrophia elegans (human
endocarditis patients) (13), Abiotrophia
balaenopterae (isolated from a minke whale) (10), and
most recently Abiotrophia para-adiacens (human endocarditis patients) (8), which has been proposed for some strains
similar to A. adiacens. Phylogenetically, the
genus Abiotrophia consists of two distinct lines,
A. defectiva and a similar group consisting of
A. adiacens, A. balaenopterae, and A. elegans
(3, 4). Therefore, Collins and Lawson (4)
recently have proposed that these last three species be reclassified in
a new genus, Granulicatella.
Many strains of NVS have been received at the Centers for Disease
Control and Prevention Streptococcus Laboratory over the years for
confirmation of identification and species determination. In many
cases, the species of the strains could not be determined because the
phenotypic characteristics did not correlate with the species
descriptions published in the literature. With the change of the genus
identification and the addition of new species for this group of
bacteria, we found it of interest to test a sample of the strains
identified as NVS in the Centers for Disease Control and Prevention
collection with more up-to-date procedures.
 |
MATERIALS AND METHODS |
Strains.
One hundred one NVS strains were retrieved from
70°C storage. These strains were received from 37 different state
health department laboratories.
Clinical data.
Information given on the report submitted
together with the isolate was recorded.
Phenotypic characteristics.
Strains were grown on Danish
blood agar (DBA) (5 and 10%; a peptone [5.0 g/1,050 ml] agar [10.0
g/1,050 ml] supplemented with cysteine HCl [0.05 g/1,050 ml]) and
yeast extract (3.0 g/1,050 ml), and 5% sheep blood agar (SBA)
(Trypticase soy agar with 5% sheep blood). The cultures were
phenotypically characterized and compared with the type strains of
G. adiacens (ATCC 49175T), A. defectiva (ATCC 49176T), and G. elegans
(DSM 11693T). Strains were examined for the following
characteristics: Gram stain reaction; growth (satellitism and
dependence on pyridoxal HCl); production of pyrrolidonyl aminopeptidase
(PYR), leucine aminopeptidase (LAP),
-galactosidase,
-galactosidase,
-glucuronidase, alkaline phosphatase, and
-fucosidase (Rosco Diagnostic Tablets; A/S Rosco, Taastrup,
Denmark); acetoin production (6); deamination of
arginine (according to the method of Möller [6]);
hippurate hydrolysis (tested in broth supplemented with 1% sodium
hippurate [6] and with Rosco Diagnostic Tablets); and
acid production from inulin, lactose, maltose, raffinose, sucrose,
trehalose, amygdalin, salicin, pullulan, and tagatose (Difco phenol red
broth base supplemented with 1% carbohydrate; tubes were observed for 14 days). Standard inoculum was 1 drop of an 18-h-old Todd-Hewitt broth
culture supplemented with 5 drops of pyridoxal HCl (10 mg/liter) (repeated just before inoculation of tests) when testing for acid production from carbohydrates and 3 drops when testing for enzyme production.
 |
RESULTS |
Phenotypic characteristics.
Many cultures were submitted with
the presumptive identification of unknown bacterial species that grow
on only chocolate agar and with pleomorphic Gram stain characteristics,
much like the characteristics described by Bottone et al.
(2). Isolates exhibited Gram stain variability and
pleomorphism with forms ranging from bacilli with spore-like swellings
to cocci arranged predominantly in pairs and chains when Gram stain
preparations were made from agar plates. Addition of pyridoxal HCl (10 mg/liter; 5 drops in 7 ml of Todd-Hewitt broth or 5 drops in 5 ml of
fluid thioglycolate broth) or growth on 10% DBA showed that
isolates were arranged predominantly in pairs and chains. By
recognition, isolates were alpha-hemolytic and showed satellitism
around colonies of Staphylococcus epidermidis (except for a
few strains, depending on inoculum size), and addition of pyridoxal HCl
(streaking the plate with a swab immersed in pyridoxal HCl [10
mg/liter]) was required for and/or enhanced growth on blood agar
plates. Isolates could be maintained on 10% DBA. For growth on 5 and
10% DBA and 5% SBA, the largest colonies were found on 5% SBA,
followed by 10% DBA, on which colony sizes were approximately twice
what was seen on 5% DBA; on 10% DBA, colonies were grayish-white and
approximately 1 to 3 mm in diameter after 48 h. Approximately 10%
of strains showed dimorphism, with small and large colony variants
which by reculturing showed the same dimorphism and had
identical phenotypic reactions. No growth was seen for any isolate in
6.5% NaCl.
Results of phenotypic tests are given in Table
1. In testing for production of LAP and
PYR, weak positive reactions were characteristically found with a color
shift to pink and were red for only a few of the isolates using the
recommended size of inoculum. Of the isolates, 55 and 43 resembled
G. adiacens and A. defectiva, respectively. G. adiacens-like isolates characteristically were
-galactosidase negative and
-glucuronidase positive and produced acid from tagatose but not from lactose, trehalose, and pullulan. A. defectiva-like isolates characteristically
were
-galactosidase positive and
-glucuronidase negative and
produced acid from lactose, trehalose, and pullulan but not from
tagatose. Although some strains produced a late positive reaction
(after 10 days of incubation), acid from maltose and sucrose was
produced by the majority of strains included in the study. Among the
G. adiacens isolates, one-third of isolates did
not produce
-glucuronidase; however, only one of these isolates did
not produce acid from tagatose, thereby resembling the description of
A. para-adiacens (8). The three
strains resembling G. elegans produced arginine
dihydrolase but not acid from trehalose, tagatose, and pullulan.
View this table:
[in this window]
[in a new window]
|
TABLE 1.
Phenotypic characteristics of clinical
Abiotrophia-like and Granulicatella-like strains
compared to results obtained for the type strains of the species
|
|
Clinical data.
Clinical data for 97 patients are given in
Table 2. The lowest median age of
patients was seen for patients from whom A. defectiva was isolated, which could be attributed to
the presence of more patients with congenital heart disease
in this group. Blood cultures were by far the most common
source, though three isolates from eye ulcers were also included.
Infective endocarditis was reported in 58% of patients for whom
clinical diagnosis was reported, while in 26% of patients septicemia
or bacteremia was given as the clinical diagnosis.
 |
DISCUSSION |
Microscopic appearance and results of Gram staining may vary
considerably among NVS strains; in particular, the extremely pleomorphic appearance of NVS strains may be confusing (2, 15). Addition of pyridoxal HCl causes most isolates to
convert to Streptococcus-like cellular arrangements
and gram positivity. For the recently described species
G. elegans, however, addition of cysteine HCl has
this effect, but addition of pyridoxal HCl does not (13).
The compositions of primary isolation media have changed considerably
over time and are still being improved, influencing the description of
growth characteristics. Furthermore, it seems that some isolates appear
to adapt to growth without addition of pyridoxal or cysteine.
Satellitism around S. epidermidis is an important
phenotypic characteristic, as strains belonging to the miscellaneous
group of Streptococcus-like Gemella strains (6) characteristically have not exhibited this feature.
Some isolates; however, have adapted to growth well enough not to
require satellitism or excessive inoculum, and perhaps carryover of
primary isolation medium containing pyridoxal may be enough enrichment for satellitism not to be required.
Kanamoto et al. (8) recently investigated 45 Abiotrophia strains (including the type strains of
A. defectiva, G. adiacens, and G. elegans) from endocarditis patients for
DNA homology, PCR of genomic DNA sequences, 16S rRNA gene
PCR-restriction fragment length polymorphism analysis, 16S rRNA gene
sequence homology, and phenotypic characteristics. The endocarditis
isolates could be divided into four genetic groups representing the
three type strains and a new group closely related to G. adiacens. These investigators proposed that this new group
be named A. para-adiacens sp. nov. The 45 endocarditis isolates were identified as 9 strains of A. defectiva, 15 strains of G. adiacens,
13 strains of A. para-adiacens, and 8 strains of
G. elegans. Phenotypic characteristics useful in
differentiating between species within the genera
Abiotrophia and Granulicatella are production of
- and
-galactosidase; production of
-glucuronidase; hippurate
hydrolysis; arginine dihydrolase activity; and acid production from
trehalose, sucrose, pullulan, and tagatose (1, 10; this
study). The most often reported results for these reactions, including
results from the present study, are given in Table
3. For the type strains, phenotypic reactions resembled results obtained for the majority of the clinical strains. However, the type strain of G. adiacens
produced
-galactosidase, in contrast to 51 of 55 clinical strains.
Some of the phenotypic characteristics are, however, not 100% positive
or negative (Table 1).
Twenty-three of the A. defectiva strains, 31 of
the G. adiacens strains, and the 3 G. elegans strains examined in this study have been examined by
partial 16S rRNA sequence analysis; species identifications based on
phenotypic reactions and sequencing were in accordance for all strains
(M. D. Collins, unpublished data). Molecular methods will in the
future have a more prominent place as a diagnostic tool. Primer sets
for detection and identification by PCR have been described and tested
by Roggenkamp et al. (14). They examined 4 G. elegans, 8 G. adiacens,
and 3 A. defectiva strains in addition to 57 non-NVS strains and succeeded in separating NVS strains from non-NVS
strains and correctly identifying the NVS strains. Phylogenetically,
the reclassified Abiotrophia species exhibit a close
phylogenetic relationship, with 16S rRNA sequence divergences within
3% and a sequence divergence of approximately 7% (4).
Granulicatella and Abiotrophia species are
related to members of the more recently described genera
Facklamia, Ignavigranum, Globicatella, Eremococcus,
Dolosicoccus, and Aerococcus, which also may be isolated in human infections and with whom they share various amounts of phenotypic identity (4). Cellular
arrangement in Gram stains, tests for production of LAP and PYR, and
susceptibility to vancomycin are important characteristics when
differentiating among this group of bacteria (6). It is
worth emphasizing that often the production of LAP and PYR is weak for
Abiotrophia and Granulicatella strains. It is
therefore very important to use sufficient inocula even though the
strains are often difficult to cultivate.
Granulicatella and Abiotrophia species are part
of the normal oral flora and the human urogenital and intestinal tracts
(15). Among 91 isolates from the human mouth, a proportion
of isolates of A. defectiva, G. adiacens, and
G. elegans of about 1:11:1 was found (16).
Approximately 5% of infective endocarditis cases are caused by
NVS strains (15). A number of studies referring to
endocarditis caused by NVS have appeared in the literature. Of those,
only a few include cases in children and/or cases with prosthetic valve
endocarditis. In this study, five patients were less than 15 years old,
and in two patients, prosthetic valves were present. Besides
endocarditis, NVS have been implicated in a variety of other infections
anatomically related to their natural habitats (15).
Notably, among the isolates received at the Centers for Disease Control
and Prevention three isolates were from patients with corneal ulcers
(n = 2) and keratitis (n = 1).
Recently, two cases of vitreous infections by A. defectiva and G. adiacens following cataract extraction for two elderly patients were described in the
literature (11). In addition, NVS strains have been
isolated from horses with corneal ulcers (5) and from
humans with infectious crystalline keratopathy
(12). In a review of 30 cases of infective endocarditis caused by NVS isolates (17), it was noted
that the clinical course often was more severe than that in cases
caused by enterococci or viridans streptococci. Infections were
difficult to treat, with a relapse rate of 41% despite treatment with
appropriate antibiotics.
 |
ACKNOWLEDGMENTS |
We are indebted to the staffs of the Public Health Laboratories
in the United States for sending isolates and clinical information and
to Kirsten Burmeister, The Neisseria Department, and Jette Nielsen,
Department of Clinical Microbiology, Statens Serum Institut, Copenhagen, Denmark, for excellent technical assistance. We also express our appreciation to M. D. Collins for performing and
sharing the partial 16S rRNA gene sequencing data.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Clinical Microbiology, Statens Serum Institut, Artillerivej 5, DK-2300 Copenhagen S, Denmark. Phone: 45 3268 3572. Fax: 45 3268 3873. E-mail: jjc{at}ssi.dk.
 |
REFERENCES |
| 1.
|
Beighton, D.,
K. A. Homer,
A. Bouvet, and A. R. Storey.
1995.
Analysis of enzymatic activities for differentiation of two species of nutritionally variant streptococci, Streptococcus defectivus and Streptococcus adjacens.
J. Clin. Microbiol.
33:1584-1587[Abstract].
|
| 2.
|
Bottone, E. J.,
C. A. Thomas,
D. Lindquist, and J. M. Janda.
1995.
Difficulties encountered in identification of a nutritionally deficient streptococcus on the basis of its failure to revert to streptococcal morphology.
J. Clin. Microbiol.
33:1022-1024[Abstract].
|
| 3.
|
Bouvet, A.,
F. Grimont, and P. A. D. Grimont.
1989.
Streptococcus defectivus sp. nov. and Streptococcus adjacens sp. nov., nutritionally variant streptococci from human clinical specimens.
Int. J. Syst. Bacteriol.
39:290-294[Abstract/Free Full Text].
|
| 4.
|
Collins, M. D., and P. A. Lawson.
2000.
The genus Abiotrophia (Kawamura et al.) is not monophyletic: proposal of Granulicatella gen. nov., Granulicatella adiacens comb. nov., Granulicatella elegans comb. nov. and Granulicatella balaenopterae comb. nov.
Int. J. Syst. Evol. Microbiol.
50:365-369[Abstract].
|
| 5.
|
Da Silva Curies, J. M.,
C. J. Murphy,
S. S. Lang, and R. W. Bellhorn.
1990.
Nutritionally variant streptococci associated with corneal ulcers in horses: 35 cases (1982-1988).
J. Am. Vet. Med. Assoc.
197:624-626[Medline].
|
| 6.
|
Facklam, R., and J. A. Elliott.
1995.
Identification, classification, and clinical relevance of catalase-negative, gram-positive cocci, excluding the streptococci and enterococci.
Clin. Microbiol. Rev.
8:479-495[Abstract].
|
| 7.
|
Frenkel, A., and W. Hirsch.
1961.
Spontaneous development of L forms of streptococci requiring secretions of other bacteria or sulphydryl compounds for normal growth.
Nature
191:728-730.
|
| 8.
|
Kanamoto, T.,
S. Sato, and M. Inoue.
2000.
Genetic heterogeneities and phenotypic characteristics of strains of the genus Abiotrophia and proposal of Abiotrophia para-adiacens sp. nov.
J. Clin. Microbiol.
38:492-498[Abstract/Free Full Text].
|
| 9.
|
Kawamura, Y.,
X. Hou,
F. Sultana,
S. Liu,
H. Yamamoto, and T. Ezaki.
1995.
Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively.
Int. J. Syst. Bacteriol.
45:798-803[Abstract/Free Full Text].
|
| 10.
|
Lawson, P. A.,
G. Foster,
E. Falsen,
B. Sjöden, and M. D. Collins.
1999.
Abiotrophia balaenopterae sp. nov., isolated from the minke whale (Balaenoptera acutorostrata).
Int. J. Syst. Bacteriol.
49:503-506[Abstract/Free Full Text].
|
| 11.
|
Namdari, H.,
K. Kintner,
B. A. Jackson,
S. Namdari,
J. L. Hughes,
R. R. Peairs, and D. J. Savage.
1999.
Abiotrophia species as a cause of endophthalmitis following cataract extraction.
J. Clin. Microbiol.
37:1564-1566[Abstract/Free Full Text].
|
| 12.
|
Ormerod, L. D.,
K. L. Ruoff,
D. M. Meisler,
P. J. Wasson,
J. C. Kintner,
S. P. Dunn,
J. H. Lass, and I. Van de Rijn.
1991.
Infectious crystalline keratopathy. Role of nutritionally variant streptococci and other bacterial factors.
Ophthalmology
98:159-169[Medline].
|
| 13.
|
Roggenkamp, A.,
M. Abele-Horn,
K.-H. Trebesius,
U. Tretter,
I. B. Autenrieth, and J. Heesemann.
1998.
Abiotrophia elegans sp. nov., a possible pathogen in patients with culture-negative endocarditis.
J. Clin. Microbiol.
36:100-104[Abstract/Free Full Text].
|
| 14.
|
Roggenkamp, A.,
L. Leitritz,
K. Baus,
E. Falsen, and J. Heesemann.
1998.
PCR for detection and identification of Abiotrophia spp.
J. Clin. Microbiol.
36:2844-2846[Abstract/Free Full Text].
|
| 15.
|
Ruoff, K.
1991.
Nutritionally variant streptococci.
Clin. Microbiol. Rev.
4:184-190[Abstract/Free Full Text].
|
| 16.
|
Sato, S.,
T. Kanamoto, and M. Inoue.
1999.
Abiotrophia elegans strains comprise 8% of the nutritionally variant streptococci isolated from the human mouth.
J. Clin. Microbiol.
37:2553-2556[Abstract/Free Full Text].
|
| 17.
|
Stein, D. S., and K. E. Nelson.
1987.
Endocarditis due to nutritionally deficient streptococci: therapeutic dilemma.
Rev. Infect. Dis.
9:908-916[Medline].
|
Journal of Clinical Microbiology, October 2001, p. 3520-3523, Vol. 39, No. 10
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.10.3520-3523.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Kutzer, P., Schulze, C., Engelhardt, A., Wieler, L. H., Nordhoff, M.
(2008). Helcococcus ovis, an Emerging Pathogen in Bovine Valvular Endocarditis. J. Clin. Microbiol.
46: 3291-3295
[Abstract]
[Full Text]
-
Ohara-Nemoto, Y., Kishi, K., Satho, M., Tajika, S., Sasaki, M., Namioka, A., Kimura, S.
(2005). Infective Endocarditis Caused by Granulicatella elegans Originating in the Oral Cavity. J. Clin. Microbiol.
43: 1405-1407
[Abstract]
[Full Text]
-
Zheng, X., Freeman, A. F., Villafranca, J., Shortridge, D., Beyer, J., Kabat, W., Dembkowski, K., Shulman, S. T.
(2004). Antimicrobial Susceptibilities of Invasive Pediatric Abiotrophia and Granulicatella Isolates. J. Clin. Microbiol.
42: 4323-4326
[Abstract]
[Full Text]
-
Rothschild, C. M., Oaks, J. L., Schaupp, J. K., Rurangirwa, F. R., Sellon, D. C., Hines, M. T.
(2004). Helcococcus ovis Isolated from a Pulmonary Abscess in a Horse. J. Clin. Microbiol.
42: 2224-2226
[Abstract]
[Full Text]
-
Rogers, G. B., Hart, C. A., Mason, J. R., Hughes, M., Walshaw, M. J., Bruce, K. D.
(2003). Bacterial Diversity in Cases of Lung Infection in Cystic Fibrosis Patients: 16S Ribosomal DNA (rDNA) Length Heterogeneity PCR and 16S rDNA Terminal Restriction Fragment Length Polymorphism Profiling. J. Clin. Microbiol.
41: 3548-3558
[Abstract]
[Full Text]
-
Woo, P. C.-Y., Fung, A. M.-Y., Lau, S. K.-P., Chan, B. Y.-L., Chiu, S.-K., Teng, J. L.-L., Que, T.-L., Yung, R. W.-H., Yuen, K.-Y.
(2003). Granulicatella adiacens and Abiotrophia defectiva bacteraemia characterized by 16S rRNA gene sequencing. J Med Microbiol
52: 137-140
[Abstract]
[Full Text]
-
Facklam, R.
(2002). What Happened to the Streptococci: Overview of Taxonomic and Nomenclature Changes. Clin. Microbiol. Rev.
15: 613-630
[Abstract]
[Full Text]
-
Casalta, J. P., Habib, G., La Scola, B., Drancourt, M., Caus, T., Raoult, D.
(2002). Molecular Diagnosis of Granulicatella elegans on the Cardiac Valve of a Patient with Culture-Negative Endocarditis. J. Clin. Microbiol.
40: 1845-1847
[Abstract]
[Full Text]