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Journal of Clinical Microbiology, December 2001, p. 4413-4419, Vol. 39, No. 12
Department of Medical Microbiology and
Virology1 and University Children's
Hospital,2 Christian-Albrechts University,
Kiel, Germany
Received 27 November 2000/Returned for modification 20 March
2001/Accepted 27 September 2001
Detection of parvovirus B19 DNA offers diagnostic advantages over
serology, particularly in persistent infections of immunocompromised patients. A rapid, novel method of B19 DNA detection and quantification is introduced. This method, a quantitative PCR assay, is based on
real-time glass capillary thermocycling (LightCycler [LC]) and
fluorescence resonance energy transfer (FRET). The PCR assay allowed
quantification over a dynamic range of over 7 logs and could quantify
as little as 250 B19 genome equivalents (geq) per ml as calculated for
plasmid DNA (i.e., theoretically The human erythrovirus B19, a
member of the family Parvoviridae, causes a broad and
seemingly expanding spectrum of disorders (7, 12, 23, 44).
The clinical picture depends on the immune status and age of the
patient (14, 36, 43). Parvovirus B19 shows a remarkable
tropism for erythroid progenitor cells in the bone marrow, which is
partly based on binding to its receptor, the blood group P antigen
(6). Viral replication, and possibly also the induced
immune response, interferes with physiological functions and loss of
the erythroid progenitor cells, resulting in a usually subclinical
reticulocytopenia (8). In patients with an underlying
hematologic disorder and high blood cell turnover (e.g., hemolytic
anemia), transient aplastic anemia may ensue. Immunocompromised
patients, who have an increased risk of developing a persistent B19
infection, are threatened by a chronic reticulocytopenic anemia, also
known as pure red cell anemia (2, 8).
Diagnosis of uncomplicated cases of acute B19 infection (fifth disease
or arthropathy) is usually clinically based and can be accomplished by
detection of specific immunoglobulin M (IgM) antibodies except in
immunocompromised patients, who are prone to persistent infection and
who may generate IgM-specific B19 antibodies less reliably (7,
19). Likewise, specific IgG is not a reliable marker for
discriminating a reconvalescent status from chronic persistent
infection (35), although recent data indicate that IgG
antibodies specific for nonstructural protein 1 (NS-1) of B19 are more
frequently associated with persistent infection (24).
Detection of DNA by hybridization or PCR has been reported to be
superior in the diagnosis of prenatal B19 infections and in children
with oncologic or hematologic disorders (5, 11, 34).
Several qualitative and quantitative PCR methods targeting different
regions of the parvovirus genome have been published (1, 4, 9,
10, 13, 15, 17, 22, 25, 40). These PCR approaches are based on
conventional block thermocycling and combined single-round PCRs with
subsequent oligohybridization or use a nested format.
The recently developed LightCycler (LC) DNA amplification technology
(Roche Diagnostics, Mannheim, Germany) combines rapid glass capillary
thermal cycling with real-time microvolume fluorescence monitoring
(47). Detection of amplicons is achieved during the run in
real time. Melting point analysis of the amplicons at the end of the
run is used as a specificity control when the fluorochrome SYBR green
is used for detection of double-stranded DNA. Alternatively, specificity can be tested during the run by using two target-specific hybridization probes which utilize fluorescence resonance energy transfer (FRET) to generate a measurable signal. In the latter case,
two oligonucleotide probes (HybProbe) bind to immediately adjacent regions of the respective amplicon. The upstream probe (referred to as the probe) is labeled at its 3' end with fluorescein, while the 5' end of the downstream probe (referred to as the anchor) is
labeled with either of the fluorochromes LC-Red 640 and LC-Red 705. To
avoid elongation by the Taq polymerase, the anchor is 3'
phosphorylated. When it is ensured that the probe and anchor are spaced
no more than five nucleotides apart, simultaneous binding to the
specific target generates an amplified signal which is detected fluorometrically.
In the present study, we introduced a rapid and sensitive PCR assay for
the quantification of parvovirus B19 DNA, which is based on LC-FRET
technology. Up to 25 samples can be quantitatively analyzed within 45 min. The quantification limit was found to be theoretically Patients and serum samples.
Immunocompetent patients were
grouped on the basis of their B19-specific serostatus irrespective of
their disease status: (i) IgM and IgG negative (n = 30), (ii) IgG positive and IgM negative (n = 52), or
(iii) IgM positive (n = 27). The sera had been tested for B19-specific IgM and IgG antibodies by an enzyme immunoassay (Medac, Wedel, Germany) which utilized a mixture of
baculovirus-expressed recombinant VP-1 and VP-2 B19 proteins. In
addition, serum samples (n = 10; IgG positive, IgM
negative) obtained over a 6-month period from an immunocompromised
child with a relapsing B19 infection were examined (see "Case
report"). Furthermore, serum samples obtained 15 months before and
after the intense 6-month observation period were examined.
Case report.
Informed consent was obtained from the parents
of the patient prior to publication. An 11-year-old girl had suffered
from systemic onset of JIA (also called rheumatoid or chronic
arthritis) since the age of 5. Her disease was controlled with a
combined immunosuppressive therapy consisting of oral prednisone (0.15 mg/kg daily), subcutaneous methotrexate (20 mg weekly), and oral cyclosporine (5 mg/kg daily). She had a polyarticular bout triggered by
an undefined upper respiratory tract infection. To control her
symptoms, her dose of prednisone was increased to 1.25 mg/kg daily. One
month later, while the prednisone dose was being tapered, the patient
contracted another febrile disease. She complained of a dry cough, pain
on inspiration, and upper abdominal pain. Her polyarticular symptoms
recurred. Later, she developed exertional dyspnea and fatigue. On
examination, the patient was afebrile and appeared pale and cushingoid.
Her heart rate was 92/min. The edge of the liver was palpable 2 cm
below the right costal margin; the spleen was not enlarged. Movement of
the cervical spine was limited in all directions, while examination of
all other joints revealed no abnormalities.
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.12.4413-4419.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
New LightCycler PCR for Rapid and Sensitive
Quantification of Parvovirus B19 DNA Guides Therapeutic Decision-Making
in Relapsing Infections


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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
5 geq per assay). Interrater
agreement analysis demonstrated equivalence of LC-FRET PCR and
conventional nested PCR in the diagnosis of an active B19 infection
(kappa coefficient = 0.83). The benefit of the new method was
demonstrated in an immunocompromised child with a relapsing infection,
who required an attenuation of the immunosuppressive therapy in
addition to repeated doses of immunoglobulin to eliminate the virus.
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INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
5 genome
equivalents (geq) per assay, which is equivalent to 250 geq per ml of
serum, as calculated on the basis of an external plasmid standard.
Optionally, the PCR efficiency can be controlled by an internal
amplification control (IC). The benefit of the new method was
demonstrated in a child with underlying systemic onset of juvenile
idiopathic arthritis (JIA) and relapsing B19 infection, who required an
attenuation of immunosuppressive therapy in addition to repeated doses
of immunoglobulin to eliminate the virus.
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MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
DNA extraction.
DNA was extracted by a commercial
silica-based method (blood kit; Qiagen, Hilden, Germany) from 200 µl
of serum samples which had been stored for up to 1 year at
20°C.
DNA was eluted with 50 µl of ultrapure water (concentration factor,
4:1). The serum samples had been used before in serological assays; in
order to minimize the risk of cross contaminations, care was taken to
select sera negative for B19 virus-specific IgM which had not been
analyzed in batch with samples that tested IgM positive.
Block cycler-dependent amplification of B19 DNA.
Primers for
PCR were selected from highly conserved genome regions encoding NS-1
and the structural VP proteins (Table 1). Primers were chosen with the help of Prime software, which is embedded
in the GCG package, and the MeltCalc program (41). Amplifications were performed in 50-µl reaction mixtures containing 50 pmol of each primer, 200 µM concentrations of each deoxynucleoside triphosphate, 2 U of HotStar polymerase (Qiagen), and 1.5 mM
MgCl2 in the appropriate buffer. The cycling
conditions for a T3 block cycler (Biometra, Göttingen, Germany)
are shown in Table 1. Amplicons were detected by conventional ethidium
bromide-agarose gel electrophoresis.
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LC-dependent amplification of B19 DNA.
Cycling conditions
for primers NS-1a and NS-1a' were adjusted using SYBR green for
detection of amplicons in real time; the specificity of amplicons was
evaluated by melting point analysis (FastStart SYBR green kit; Roche
Diagnostics). Hybridization probes to be used with the HybProbe LC-FRET
technology were selected with the aid of the MeltCalc software
(41): probe, 5'-gCA AAA gCC ATT TTA ggC ggg
CA-fluorescein; anchor, 5'-LC-Red 640-CAC CAg ggT AgA TCA AAA AAT gCg
Tgg A-PO4 (Fig.
1A). Reaction mixtures of 20 µl
were prepared with the FastStart HybProbe kit (Roche Diagnostics) using
primers at 20 pmol each and an MgCl2
concentration of 3.0 mM. Probe and anchor were added at 3 pmol each.
Sample DNA was added in a volume of 5 µl per reaction. Cycling
started with an initial denaturation of 6 min at 96°C followed by 40 cycles of 95°C for 4 s, 56°C for 16 s, and 72°C for
12 s. The temperature for transition from annealing to elongation
was lowered from 20 to 2°C per s. Specific hybridization, indicated
by the LC-Red 640 signal, was monitored during the annealing phase with
the channel setting F2/F1. Fluorimeter gains of the LC were universally set to values of 5 (channel 1), 15 (channel 2), and 30 (channel 3).
Melting points for the probe-anchor-target duplexes were checked following completion of the cycling procedure. Hybrids were denatured at 95°C for 10 s, allowed to reanneal at 55°C for 20 s,
and then heated at 0.2°C per s to 75°C. Specific products showed a
Tm of 64.0°C (±0.5°C) in melting
point analysis. The assay was completed within 45 min.
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Construction of an IC. An IC was constructed for use in a competitive PCR protocol with the LC-FRET technology. For this purpose, the 229-bp PCR fragment, defined by primers NS-1a and NS-1a', was cloned into the T/A plasmid vector pCR2.1TOPO (Invitrogen, Groningen, The Netherlands) to give the plasmid pPB19N. The fragment was mutated using the QuickChange kit (Stratagene, La Jolla, Calif.) to accept unique SphI and BglII sites flanking the sequence of the anchor probe (Fig. 1B). The mutated fragment was transferred into the EcoRI site of the vector pGEM 9Zf(+) (Promega, Madison, Wis.), which does not contain SphI or BglII sites. The original HybProbe anchor sequence was replaced, after SphI/BglII double digestion, with a synthetic sequence (plasmid pPBIC). Detection of IC amplicons generated with primers NS-1a and NS-1a' was then carried out by means of the B19-specific fluorescein-labeled probe described above and the unique IC anchor 5'-LC-Red 705-CAC gCT CAC AgC gCA gTA gAT CT-PO4 measured at channel 3 of the LC (band-pass, 710 nm).
DNA quantification. Quantities and copy numbers of plasmid pPB19N and pPBIC were calculated following UV spectrophotometry (260 nm) and by gel electrophoresis against a standardized size ladder (SmartLadder; Eurogentech, Seraing, Belgium).
Parvovirus B19 isolate V9. Plasmid DNA which harbored a large part of the entire genomic DNA of the B19 isolate V9 (38), including the NS-1 and VP gene sequences targeted by our PCRs, was kindly supplied by Q. T. Nguyen, Institut Pasteur, Paris, France.
Statistical analysis.
The strength of agreement between the
results of different assays was measured by robust kappa (
)
statistics (18), implemented, e.g., in the EpiInfo 6.0 software distributed by the World Health Organization and Centers for
Disease Control and Prevention. According to convention, a
coefficient of >0.6 indicated good agreement, whereas a
of >0.8
signaled very good agreement.
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RESULTS |
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Performance characteristics of the B19 LC PCR.
A standard
dilution of B19-specific sequence copies was prepared using plasmid
pPB19N, which contains a 229-bp fragment of the NS-1 gene generated by
PCR using the primer pair NS-1a-NS-1a' (Table 1). Serial 10-fold
dilutions were made in diethyl pyrocarbonate-treated water containing 2 mg of denatured herring sperm DNA liter
1 as a
stabilizer. Aliquots of 5 µl were analyzed for B19 DNA.
5 geq
per assay (Fig. 2). Up to 14 measurements
per log step were run separately from the same master dilution series
over a period of 8 weeks in order to assess reproducibility. The
relative standard deviation (%SD) within and between the different
runs was generally below 30%, except for dilutions containing
theoretically 5 (%SD = 62) and 0.5 (%SD = 265) geq per
assay. In 4 of 13 runs with samples containing theoretically 0.5 geq
per assay, amplicons were not detected in real time, but a weak though
specific Tm signal at 64.0°C was obtained during melting point analysis. These samples were regarded as
qualitatively positive but not quantifiable. Therefore, both detection
and quantification of theoretically 0.5 geq per assay were regarded as
unreliable.
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Detection of the genetically diverse human erythrovirus isolate V9. Recently, a genetically markedly distinct erythrovirus isolate (termed V9) was detected in a child with transient aplastic anemia (38). The authors reported an estimated sequence divergence from standard B19 strains of at least 15% in some regions. A plasmid containing large parts of the genomic DNA of the V9 isolate was tested in our various PCR formats. Specific amplicons were obtained with the NS-1-specific block cycler PCR and with the LC-FRET assays but not with the seminested VP-1 PCR (data not shown).
Comparative analysis of patient sera for B19 DNA.
A total of
109 sera from 102 immunocompetent patients and 12 sera from the
immunocompromised child with JIA were examined in three different PCRs.
The results are summarized in Fig. 3 (Venn diagram). All samples from immunocompetent patients which yielded
a positive PCR result that was concordantly positive between at least
two formats (grey portions of the Venn diagram) also proved to be
positive for B19 IgM. These patients presented with typical symptoms of
acute B19 infection. By nested NS-1 PCR, six additional sera from
immunocompetent patients tested positive. Three of these also tested
IgM positive, while the remaining three came from the
IgG+ IgM
cohort. None of
the seronegative patients tested positive in either PCR format. An
additional eight sera from the immunocompromised child
(IgG+ IgM
) with relapsing
B19 infection tested concordantly positive in all three PCR formats,
while one sample from this child was positive by nested NS-1 PCR only,
and three sera were concordantly negative. Interrater analysis (kappa
statistics [18]) indicated a very good agreement
(conventional definition,
> 0.8) between the LC-FRET PCR and
the nested NS-1 as well as the seminested VP PCR (
= 0.85 and
0.98, respectively). Therefore, the LC-FRET PCR can be used as a
substitute for both the nested NS-1 and the seminested VP-1 PCRs.
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= 0.92) when sera of immunocompetent patients were considered. The
quantifiable virus loads detected by the LC-FRET PCR in patient samples
ranged between theoretically 50 and 3.2 × 109 geq per ml of serum.
B19 DNA loads and clinical course of a relapsing infection in an
immunocompromised child.
Based on the detection of B19 DNA in
serum, the diagnosis of an acute parvovirus B19 infection (Fig.
4) with aplastic crisis was made in a
child who required immunosuppressive therapy for underlying systemic
onset of JIA. Initially, the B19 DNA load peaked at 3.2 × 109 geq per ml serum (Fig. 4, day 0). Circulatory
compromise occurred and the patient received two packs of red blood
cells. The ongoing severe systemic inflammatory activity did not allow
discontinuation of the immunosuppressive therapy at that point. To
specifically treat the B19 infection, the patient received a
5-day-course of polyvalent intravenous (i.v.) IgG (400 mg/kg daily).
The reticulocytopenic anemia resolved within a week. The polyarticular
symptoms subsided shortly after the diagnosis of acute parvovirus
infection was made and the prednisone dose was tapered (day 10). B19
DNA loads decreased below the detection level (by LC-FRET PCR) in the
serum within 2 months (day 60), suggesting a gradual clearance of the virus from these compartments (Fig. 4). The serum obtained at day 60 tested positive for B19 DNA only by the nested NS-1 PCR.
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DISCUSSION |
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We have developed a rapid quantitative PCR assay, based on LC-FRET technology, for the detection of B19 DNA. Quantification of viral DNA loads in serum was possible over a dynamic range of 7 log steps down to the limit of theoretically 250 geq per ml of serum. Lower virus loads were detected unreliably and by melting point analysis only. False-negative results can be controlled by coamplification of an internal standard, albeit at the expense of a loss of sensitivity of 1 log step (Fig. 2).
LC-FRET was used to detect B19 DNA in serum samples from
immunocompetent patients selected on the basis of their B19-specific serostatus, and the results were compared to those of two conventional block cycler PCR formats (nested NS-1-specific and seminested VP-specific PCR). The nested NS-1 PCR proved to be more sensitive, since an additional six sera tested positive by this assay only (Fig.
3). This reflects the performance characteristics of the nested NS-1
PCR when tested with the positive control plasmid pPBN19 (data not
shown). Samples which tested concordantly positive by at least two
different PCR formats were also positive for B19 IgM (Fig. 3). Both
LC-FRET and the VP PCR failed to identify six sera of which three also
tested positive for B19 IgM. An additional three sera which tested DNA
positive by the nested NS-1 PCR exclusively, however, came from
immunocompetent IgM-negative IgG-positive patients with no clinical
signs of B19 infection. It remains to be clarified whether these
results are due to a prolonged viremic but asymptomatic infection or
represent false-positive results. Despite these discrepancies, the
kappa coefficient revealed a very good correlation between the LC-FRET
PCR and the block cycler PCR formats. The sensitivity of the LC-FRET
PCR is in the range of other published B19 DNA quantification methods,
i.e., approximately 5 geq per assay (1, 4, 10, 17, 22, 25,
40). For immunocompetent patients, LC-FRET PCR also correlated
favorably with IgM serostatus (
= 0.92).
Genetic variation between B19 wild-type isolates has been reported to be less than 5%, and few genetic changes accumulate longitudinally during prolonged chronic infection in individual patients (27). Our primers and probes were positioned in regions which were completely conserved between at least five different isolates for which sequence data were available from the databases. DNA derived from the human erythrovirus isolate V9, which was reported to be genetically divergent from standard B19 wild-type strains (38), was readily detected by our NS-1-specific PCRs (LC and nested NS-1) but not by the VP-specific seminested PCR.
The reported case of the immunosuppressed child with underlying systemic onset of JIA and relapsing parvovirus B19 infection is an example of the new method's value in therapeutic decision-making. The child experienced two separate episodes of active B19 replication, which could be quantitatively monitored and clearly discerned only by the LC-FRET PCR (Fig. 4) but not by the nested NS-1 PCR, which also yielded a positive signal for the serum obtained at day 60. Therapeutic interventions were guided by the quantification of viral loads in the serum in association with the hematological values. Treatment with i.v. IgG, combined with an attenuated T-cell-suppressive regimen, finally led to a stable hematologic state with viral loads below the detection level of the LC-FRET PCR.
Immunosuppressive therapy, e.g., in autoimmune diseases, is considered a risk factor for persistence of the parvovirus B19 (7). Immunocompromised patients have difficulties eliminating the virus from their bone marrow, and bone marrow insufficiency may persist for up to 10 years (31). Chronic infections without underlying immunodeficiencies are rarely described (16, 35, 37). Protection from parvovirus B19 is thought to be mediated by neutralizing antibodies (32, 49). Specific IgM antibodies are detectable as early as day 5 after infection and persist for months, while IgG antibodies are detectable from the second week postinfection and have lifelong persistence (49). Neutralizing antibodies are mounted against both capsid proteins VP-1 and VP-2 (3, 21, 39, 48). Antibodies against VP-1, the minor capsid protein, are found predominantly in convalescent-phase sera (32, 49). Antibodies against VP-2, the major capsid protein, are found predominantly during the acute disease and early convalescence (26, 32, 42), especially when denatured (linear) antigen is used in the test system. However when native (conformational) VP2 antigen is used, the antibodies can also be detected in convalescent-phase sera (28, 42). A deficiency in generating specific antibodies either qualitatively (e.g., patients with congenital or acquired immunodeficiencies) or quantitatively (e.g., patients with leukemia) is considered responsible for persistent B19 infections (32, 49). Consequently, supplementation of specific immunoglobulins is the accepted therapy of choice (29, 30, 32, 33, 49). Commercial preparations of immunoglobulins contain specific parvovirus B19 antibodies, which are deemed responsible for clinical effectiveness. We tested one lot of the immunoglobulins given to our patient (Sandoglobin; Novartis, Nürnberg, Germany) and detected B19 VP-specific antibodies by enzyme-linked immunosorbent assay (Medac). The standard dose of i.v. IgG is 400 mg/kg daily for 5 to 10 days (29, 49). In our patient, i.v. IgG treatment coincided with declining viral loads in the serum (Fig. 4) but obviously failed to eliminate the virus from the bone marrow, as was evident from the rebound of viral DNA loads associated with reticulocytopenia while the patient was under intensified immunosuppressive treatment. In AIDS patients with relapses of B19 infection, i.v. IgG is given at monthly intervals at a dosage of 1 g/kg daily for 1 to 2 days (30). We adapted the protocol accordingly. Again, i.v. IgG treatment led to gradually declining viral loads in serum, but only when the T-cell-suppressive regimen was attenuated by tapering the prednisone and discontinuing cyclosporine, in addition to repeated doses of immunoglobulins, did we observe a sustained hematological normalization and undetectable viral loads in serum.
The patient's course allows speculations about the relative importance of the humoral and cellular immune responses in persistent parvovirus infection. In general, neutralizing antibodies are thought to be the mainstay of acquired immunity (32, 49). Only recently has it become evident that cellular immunity plays a significant role in overcoming acute infection and providing long-term memory (20, 46, 45). When our patient had her first episode of parvovirus infection, a standard dose of immunoglobulins suppressed the DNA levels below the detection limit but did not eliminate the virus. The infection relapsed after the prednisone dose, a potent inhibitor of T-cell function, was increased. Immunoglobulin therapy was reinstituted. Four weeks after reinstitution of i.v. IgG therapy, the viral load declined by a factor of 4 × 103. Immunoglobulin therapy after the first episode had led to a decline of viral DNA load by a factor of 5 × 106. We therefore reasoned that immunoglobulin therapy might not be sufficient to clear the virus, and we attenuated the immunosuppressive regimen. In parallel, i.v. IgG therapy was continued. This two-pronged therapeutic approach allowed the patient to finally clear the virus from circulation. After more than 15 months, B19 DNA remained undetectable in serum. In retrospect, it is not possible to ascribe the effect of viral elimination to either attenuation of T-cell suppressive therapy or to repeated doses of immunoglobulins.
In conclusion, the LC-FRET PCR specific for B19 DNA can substitute for conventional nested PCR formats for the diagnosis of an active B19 infection. The advantages of the LC-FRET PCR are its rapidity (45 min versus 5 h), ease of preparation (one tube, including, if desired, an IC), diminished risk of cross contamination, high specificity, and the option of quantification. Given the reduced hands-on time, implementation of this format would appealingly allow cost reduction in the clinical diagnostic laboratory. The LC-FRET PCR can guide the therapeutic options of repeated immunoglobulin therapy versus a reduction of immunosuppressive regimens in patients with persistent parvovirus infections.
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ACKNOWLEDGMENTS |
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We thank Bianca Grafelmann-Hilali and Helga Janeçek for technical assistance and Carolyn Cannon for reviewing the manuscript, and we gratefully acknowledge the help of Q. T. Nguyen in supplying erythrovirus V9-specific sequences.
T.C.H. and M.H. contributed equally to this work.
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FOOTNOTES |
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* Corresponding author. Present address: Food and Veterinary Diagnostic Laboratory, Max-Eyth Strasse 5, D-24537 Neumuenster, Germany. Phone: 49 4321 904 766. Fax: 49 4321 766 619. E-mail: timm.harder{at}lvua-sh.de.
Present address: Channing Laboratory, Brigham and Women's
Hospital, Department of Medicine, Boston, MA 02115.
Present address: Center for Preventive Pediatrics, Department of
Pediatric Infectious Diseases, University Children's Hospital, Johannes-Gutenberg University, D-55101 Mainz, Germany.
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