Journal of Clinical Microbiology, March 2001, p. 1165-1168, Vol. 39, No. 3
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.3.1165-1168.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Department of Clinical Pathology, Ajou University School of Medicine, Suwon, Korea1; Division of Infectious Disease, Emory University School of Medicine, Atlanta, Georgia 303292; and Hospital Infections Program, Centers for Disease Control and Prevention, Atlanta, Georgia 303333
Received 18 September 2000/Returned for modification 11 November 2000/Accepted 11 December 2000
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ABSTRACT |
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A total of 25 isolates of vanB-containing
Enterococcus faecium were recovered from patients in a
single Korean hospital over a 20-month period. There were two distinct
vanB2 patterns among the 11 pulsed-field gel
electrophoresis types; 17 contained the prototype vanB2 and
8 contained a novel vanB2 with a 177-bp deletion in
vanYB. Both vanB2 genes were
transmissible in vitro at a mean frequency of 1.1 × 10
8 transconjugants/donor. These results suggest the
horizontal spread of vanB2 is occurring among genetically
diverse strains of E. faecium in Korean hospitals.
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TEXT |
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Vancomycin-resistant enterococci
(VRE) can be divided into five genetically distinct types, with VanA,
VanB, VanD, and VanE (1, 8, 17) representing acquired
phenotypes and VanC representing the intrinsic resistance phenotype
(12). VanB-type resistance encoded by the vanB
gene cluster is characterized by low-level vancomycin resistance
(MICs = 8 to 16 µg/ml) and susceptibility to teicoplanin
(MICs
1 µg/ml) (6, 7). The vanB gene
cluster is divided into three subtypes based on DNA sequence data:
vanB1, vanB2, and vanB3 (9, 16). The
vanB determinants are commonly located on the enterococcal
chromosome. Thus, dissemination of the resistance gene often is limited
to either clonal spread of the host strain or through conjugative
transposable elements (2, 18). Molecular epidemiologic
techniques, such as pulsed-field gel electrophoresis (PFGE), do not
detect the spread of resistance determinants during outbreaks.
Therefore, it has been suggested that epidemiologic investigations of
resistant organisms, such as VRE, should include analysis of the
resistance determinant types in addition to the strain types (4,
10).
VRE were first detected in Korea in 1992 and have been recovered from patients in multiple hospitals ever since. The original VRE harbored vanA and showed high-level resistance (11; W. J. Kim, H. J. Cheong, D. R. Kim, and S. C. Park, Prog. Abstr. 1st Int. Conf. Enterococci, p. 51-52, 2000). The vanB-containing strains, on the other hand, did not appear in Korea until 1997. These strains showed moderate to high-level vancomycin resistance and diverse PFGE patterns. To better understand the spread of vanB-containing enterococci in Korea, all of the vanB VRE collected over a 2-year period from Ajou University Hospital in Korea were typed using PFGE, restriction analysis of the vanB determinant and the vanSB-vanYB intergenic area, and DNA sequence analysis of the vanSB-vanYB region.
Twenty-five VRE strains were obtained from patients in Ajou University Hospital from January 1997 to August 1998. The medical records of all 25 VRE patients were reviewed as part of an epidemiologic investigation. Twelve isolates were from urine cultures, eleven were from wounds, and two were from blood. Organisms were identified using conventional biochemical reactions, the Vitek system (bioMérieux, Hazelwood, Mo.), and the API 20 Strep system (bioMérieux). Disk diffusion susceptibility tests were performed using Mueller-Hinton agar (Difco Laboratories, Detroit, Mich.) (14). Vancomycin, teicoplanin, and ampicillin MICs were determined by the agar dilution method using Mueller-Hinton agar (Difco Laboratories) (16); vancomycin-susceptible Enterococcus faecalis ATCC 29212 and vancomycin-resistant E. faecalis ATCC 51299 were used for quality control.
PFGE was performed with SmaI (Gibco BRL, Gaithersburg, Md.) as described by Murray et al. (13), with pulse times beginning with 1 s and ending with 20 s at 6 V/cm for 24 h. Banding patterns were interpreted as previously described (20). Dendrograms based on Dice coefficients and clustered using an unweighted pair group method using arithmetic averages algorithm were generated using GelPrint AQ Software (Genomic Solutions Inc., Ann Arbor, Mich.).
Extraction of bacterial DNA was performed using a Dynabeads DNA DIRECT
kit (Dynal, Oslo, Norway) as described by Haaheim and coworkers
(10). The vancomycin resistance genotypes were determined using PCR with primers specific for sequences of the vanA, vanB, vanC1, and vanC2/C3 genes, as described previously
(4, 5). The vanB subtypes were divided using
PCR restriction fragment length polymorphisms. The 667-bp PCR fragment
using primers VanBF and VanBR was digested with HhaI (Gibco
BRL) and analyzed via agarose gel electrophoresis. To perform
polymorphism analysis of the
vanSB-vanYB intergenic region, two
different primer sets were used. Primer sequences and target locations
used for specific vanB gene cluster area are listed in Table
1. E. faecalis V583 CDC
(vanB1) (19) and E. faecalis SF300
(vanB2) (9) served as controls. Primers
VanBF-VanBR and VanSY2F-VanSY2R were determined with the OLIGO program
(version 5.0; National Biosciences, Inc., Plymouth, Minn.).
Amplification conditions were 94°C initially for 1 min; 94°C for
15 s, 60°C for 30 s, and 72°C for 1 min over 25 cycles;
and a final 5-min extension period at 72°C. Long-distance PCR (L-PCR)
covering 6,041 bp of the published vanB gene cluster from
strain V583 was performed using primers VanBLF and VanBLR. The
reactions were carried out in a 100-µl reaction volume including 1×
Tricine buffer, 1.5 mM Mg acetate, a 0.2 mM concentration of each
deoxynucleoside triphosphate, a 0.25 µM concentration of each primer,
2 U of rTth DNA polymerase (Perkin-Elmer, Norwalk, Conn.)
and 1 µg of bacterial DNA. Using hot-start PCR, amplification conditions were 94°C for 1 min; 94°C for 15 s, and 68°C for
6 min for 16 cycles; 94°C for 15 s and 68°C for 6 min (with
increments of 15 s per cycle for the 68°C step only) for 12 cycles; and a final 15-min extension period at 72°C. PCR products
spanning the vanB gene cluster (6,041 bp) were digested with
HinfI/NdeI (Gibco BRL) and analyzed via agarose
gel electrophoresis. The 1,074-bp vanSB-vanYB gene amplification
products from AJ01 and AJ07 were sequenced by using ABI Prism 377 (Perkin-Elmer) with the primers VanSY2F and VanYR.
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Filter matings were performed by using E. faecalis JH2-2 as the recipient and seven strains (AJ01, AJ03, AJ05, AJ10, AJ23, AJ31, and AJ40) as the donors, as previously described (21). Transconjugants were selected on brain heart infusion agar plates containing rifampin (50 µg/ml), fusidic acid (20 µg/ml), and vancomycin (10 µg/ml). The transconjugants were examined for the presence of the vanB gene by restriction analysis of PCR products.
A total of 25 vancomycin-resistant E. faecium isolates were
recovered from urine, wound, or blood cultures from 25 different patients over a 20-month period. Epidemiologic information did not
suggest an outbreak but rather sporadic cross-transmission among
patients. All isolates were resistant to ampicillin (MIC
32 µg/ml) and vancomycin (MIC
512 µg/ml), but only one isolate (AJ30) was resistant to teicoplanin (MIC = 64 µg/ml). PFGE
revealed 11 major banding patterns and 10 subtypes among the isolates
(Fig. 1). The isolates formed 7 clusters
using a similarity cutoff of 85%. The first isolate was recovered in
January 1997. Clusters 1, 2, 4, and 5 primarily represented isolates
from the neurosurgery (NS) and rehabilitation medicine (RM) units.
Clusters 3, 6, and 7 were primarily isolates from hematology (HE) and
other surgical units, including orthopedic surgery, general surgery,
and plastic surgery. No direct cross-transmission could be documented.
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PCR analysis of the 25 isolates using the VanBF-VanBR primers
demonstrated a product of the expected size (667 bp) from each of the
isolates, indicating the presence of a vanB determinant. In
addition, vanA was detected in isolate AJ30. Restriction
analysis of the vanB PCR products in each case was
consistent with that of vanB2 (9) (Fig.
2A). Analysis of the
vanSB-vanYB intergenic region using
the VanSYF-VanSYR and VanSY2F-VanSY2R primer sets showed that 17 of 25 isolates contained a prototype vanB2 (9), designated type I, while 8 had a novel vanB2 pattern,
designated type II (data not shown). This was confirmed by restriction
analysis of the 6,041-bp long-range PCR product of the vanB
gene cluster, which suggested that a deletion of a restriction site had
occurred in the
vanSB-to-vanYB gene
region since the type II strains demonstrated one larger fragment (Fig.
2B, lane 7) than the type I control (Fig. 2B, lane 5). DNA sequence of
the 1,074-bp
vanSB-to-vanYB region
from AJ07 confirmed a 177-bp deletion in vanYB
(position 2,375 to 2,551 [data not shown]). Representatives of the
seven major PFGE patterns were mated with an E. faecalis
recipient. All seven of the vanB2 donors transferred
vancomycin resistance at a mean frequency of 1.1 × 10
8 transconjugants per donor (range 4.8 × 10
9 to 1.8 × 10
8 transconjugants per
donor). The vanB2 restriction profiles of transconjugants
were indistinguishable from those of donors (data not shown).
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The first vanB2 type I strain (AJ01) was isolated from a wound sample obtained from a 67-year-old female patient hospitalized on an NS intensive care unit. Ten weeks later, the second type I isolate (AJ03) was obtained from an NS patient; however, this isolate had a different PFGE type. No epidemiologic link could be established between the two patients. In April 1997, the first vanB2 type II VRE isolate was recovered from a wound sample from a 42-year-old male patient hospitalized on an OS unit. During the next 20 months, additional VRE with vanB2 types I and II were isolated; however, no clear epidemiologic links could be established among the patients. The strains showed a variety of PFGE types (Fig. 1). VRE with vanB2 type I were primarily from patients from the NS and RM units, while the type II strains were isolated on the OS and HE units. The two exceptions were isolates AJ10 and AJ13, which were recovered from patients on an NS ward but had the type II L-PCR pattern. However, strain AJ10 was from a patient who was transferred from OS to the NS ward, and strain AJ13 was from the patient who occupied the bed next him. The vanB2 VRE disappeared after implementation of infection control procedures including the isolation of infected patients.
The epidemiologic spread of VRE within a hospital is often investigated using PFGE (12, 13, 20). However, vancomycin resistance genes may move into previously susceptible enterococcal strains via plasmids or transposons (1, 2), particularly when VRE become endemic in a hospital (3). If this occurs, the differences in PFGE patterns among VRE isolates may suggest the influx of new VRE strains into the hospital rather than genetic exchange among endemic isolates. Such was the initial interpretation of the PFGE data from the VRE in this hospital, all of which carried a vanB2 determinant. In this study, 17 strains carried a prototype vanB2, while 8 contained a novel vanB2 that harbored a 177-bp deletion in the vanYB region and exhibited 47-bp changes (5.8%) and 19 amino acid changes compared to the vanYB sequence of the reference strain V583. This difference provided useful epidemiologic information since most of the type I isolates were from patients on the NS and RM services and those of type II were from other surgical services. Our type II is different from the 789-bp insertion in the vanSB-vanYB intergenic region recently reported by Dahl et al. (4). The continued appearance of the vanB2 type I determinant in unrelated isolates, such as AJ15 and AJ19, suggested that this gene was on a mobilizable element, a possibility which the in vitro mating studies have supported. We suspect that the novel vanB2 was derived from the prototype vanB2 gene and that both elements continue to be transmitted at low levels during ongoing cross-transmission of VRE at this hospital.
Nucleotide sequence accession numbers. The sequence data generated from vanSB and vanYB were submitted to GenBank and given the accession numbers AF302185 and AF302186.
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ACKNOWLEDGMENTS |
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We thank Nancye Clark for helpful assistance with the gene transfer studies.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Clinical Pathology, Ajou University Hospital, San 5, Wonchun-Dong, Paldal-Gu, Suwon 442-749, South Korea. Phone: 82-31-219-5785. Fax: 82-31-219-5778. E-mail: weegyo{at}madang.ajou.ac.kr.
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