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Journal of Clinical Microbiology, August 2001, p. 2924-2927, Vol. 39, No. 8
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.8.2924-2927.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Evaluation of Laboratory Testing Methods for Chlamydia
trachomatis Infection in the Era of Nucleic Acid
Amplification
Tamara J.
Battle,1,4
Matthew R.
Golden,1,3,*
Kathleen L.
Suchland,1
Jon M.
Counts,2
James P.
Hughes,5
Walter E.
Stamm,1 and
King K.
Holmes1
Division of Infectious Diseases, Center for
AIDS & STD,1 and Department of
Biostatistics,5 University of Washington,
Public Health-Seattle & King County,3
and Washington State Public Health
Laboratory,2 Seattle, Washington, and
College of Medicine, Howard University, Washington,
D.C.4
Received 9 April 2001/Returned for modification 4 May 2001/Accepted 26 May 2001
 |
ABSTRACT |
Diagnostic tests presently available for Chlamydia
trachomatis have widely varying performance characteristics. To
assess evolving laboratory testing practices since the introduction of nucleic acid amplification tests (NAAT), we surveyed laboratories in
Washington State about their testing practices in 1998 and compared our
findings to a similar survey conducted in 1995. Laboratory directors of
61 (87%) of 70 laboratories performing chlamydial tests in 1998 returned a survey. Between 1995 and 1998, 36 laboratories discontinued
chlamydial testing, and the total number of laboratories performing
tests in the state decreased from 92 to 70, a 24% decline. Of the 36 laboratories that discontinued testing, 25 (69%) had previously used
rapid tests. While no laboratory routinely used NAAT in 1995, ligase
chain reaction (LCR) was used in 23% of laboratories in 1998 and
accounted for 113,624 (36%) of the 318,133 tests performed that year.
Among the remaining 204,509 tests performed in 1998, other tests
employed included DNA probe (29%), enzyme immunoassay (20%), culture
(12%), direct fluorescent antibody assays (3%), and rapid tests
(<1%). The majority (65%) of tests performed in 1998 using
technologies other than LCR or culture were done in laboratories that
did more than 10,000 tests. Cost and loss of revenue to laboratories
were the most frequently cited reasons for not adopting NAAT. We
conclude that in Washington State, NAAT have been rapidly adopted in
larger laboratories, but most patients are still tested with much less
sensitive technologies. Financial constraints represent the major
barrier to more widespread use of DNA amplification tests.
 |
INTRODUCTION |
Screening programs and diagnostic
testing for Chlamydia trachomatis infection are now in place
in much of the United States (4). The sensitivities
of available laboratory tests for C. trachomatis
vary from less than 40 to almost 100% (1, 9, 10, 11).
However, national guidelines for chlamydial testing have not been
revised since the introduction of nucleic acid amplification tests
(NAAT) (2), and relatively little has been published about
what tests are used in actual practice.
In 1995, a survey of laboratories testing for C. trachomatis
in Washington State found that 43% employed low-sensitivity rapid tests (12). Although the U.S. Food and Drug Administration
approved the first NAAT in 1993, no laboratory in Washington State
reported using such tests routinely in 1995. Since that time, NAAT have become widely available. To assess current laboratory testing practices
and determine how they have changed since the introduction of NAAT, we
surveyed laboratories in Washington State regarding their testing
practices in 1998 and compared our findings to those of the 1995 survey.
 |
MATERIALS AND METHODS |
Surveys were conducted in 1995 and in 1999. The 1999 survey
asked directors about their laboratory's testing practices in 1998. For both surveys, study investigators attempted to contact all
laboratories in Washington State registered with the State Department
of Health Office of STD Services or the Washington State Department of
Health Office of Quality Assurance to perform tests for C. trachomatis in the preceding year. In addition, as part of the
survey regarding testing practices in 1998, directors of laboratories
included in the 1995 survey that were no longer identified by the state
as performing chlamydial tests in 1998 were contacted by telephone and,
if their laboratories were still performing chlamydial testing, added
to the study population.
Procedures for the 1995 survey have been described previously
(12). The survey on testing practices in 1998 was a
one-page, 10-question instrument that was sent to each laboratory's
director to assess the laboratory's diagnostic testing practices for
C. trachomatis. Directors were asked to provide information
about their laboratory's size and affiliation (public health,
commercial, hospital-affiliated, university-based, clinic/doctor
office), what testing technologies they routinely employed (ligase
chain reaction [LCR], PCR, Gen-Probe, culture, direct fluorescent
antibody, enzyme immunoassay [EIA], rapid test), and the numbers of
tests performed and cases detected using each test in 1998. (The 1995 survey asked for number of tests performed within a range of categories and did not collect data about the number of positive tests.) Directors
were also asked to provide their laboratory's standard charge for
testing; no effort was made to determine how much payers actually
reimbursed laboratories. In addition, if laboratories were not using
NAAT, laboratory directors were asked open-ended and multiple-choice
questions to identify barriers to adopting such technology.
If laboratory directors did not respond within 2 weeks of the original
mailing, a second survey was sent to them. Thereafter, directors were
contacted by telephone to follow up on surveys not returned and to
obtain missing information for incomplete surveys.
To assess how testing practices had changed since the introduction of
NAAT, results from the survey on testing in 1998 were compared to those
obtained in the 1995 survey. Results were summarized with percentages
for binary data and medians for continuous data. Fisher's exact test
was used to compare the frequency of use of different types of tests
between 1995 and 1998. All analyses were performed using the SPSS and
SAS programs.
 |
RESULTS |
Seventy-five laboratories were registered with the Washington
State Department of Health Office of STD Services and the Washington State Department of Health Office of Quality Assurance to perform chlamydial testing in 1998. Directors of 68 (91%) of these
laboratories returned a survey, 8 of whom reported that their
laboratories no longer performed tests for C. trachomatis.
Directors of an additional 36 laboratories included in the 1995 survey
but no longer identified by the state as performing tests for C. trachomatis were contacted by telephone. Of these, 33 (89%)
confirmed that their laboratories no longer performed tests to detect
C. trachomatis and 3 revealed that they were still
performing such tests. Of these three, one returned a survey. Thus, 61 (87%) of 70 laboratories believed to be testing for C. trachomatis in Washington State provided information about their
testing practices.
Types of laboratories, numbers of tests performed, and primary
technologies employed in 1995 and in 1998.
Between the two survey
periods, the number of laboratories performing tests for C. trachomatis decreased from 92 to 70, a 24% decline. The survey
indicated that this decline was attributable largely to a drop in the
number of clinic- or office-based laboratories performing small numbers
of tests, especially rapid tests (Table 1). Of the 89 laboratories surveyed in
1995, 36 (40%) had ceased to perform Chlamydia tests by
1998. Rapid tests were used by 25 (69%) of the laboratories that
discontinued testing, and 66% of all laboratories performing rapid
tests in 1995 ceased to do so over a 3-year period. Between the two
survey periods, 25 laboratories were newly registered to perform
chlamydial tests in Washington State. Of these, 21 (84%) returned
surveys, of which 16 reported actually performing tests for C. trachomatis in 1998: five (31%) used LCR, five (31%) used rapid
tests, three (19%) used EIA, one (6%) used Gen-Probe, and two (12%)
used direct fluorescent antibody assays.
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TABLE 1.
Characteristics of laboratories performing diagnostic
tests for C. trachomatis in Washington State, 1998
|
|
In 1998, 36% of all tests performed in laboratories participating in
the study were done using LCR, and another 12% were done using culture
(Table 2). The remaining 52% of tests
were performed using less-sensitive technologies, including DNA probe
(26%), EIA (17%), direct fluorescent antibody assays (2%), and rapid in-office tests (0.6%). Only a single laboratory reported using LCR to
confirm positive tests done by EIA. Of note, five large laboratories
performed 115,638 (56%) of the 204,509 tests done with technologies
other than LCR or culture. While the median charges for culture and LCR
were higher than for other tests, the charges reported for different
tests overlapped considerably across laboratories.
Rationale for persistent use of low-sensitivity tests.
The
directors of laboratories using technologies other than LCR were asked
multiple-choice and open-ended questions about why their laboratories
did not use an NAAT or send specimens to another laboratory for such
testing. While the cost of NAAT was the most frequently cited reason
(Table 3), 36 (65%) of 55 directors of
laboratories not performing NAAT responded that limitations of their
laboratories
test complexity, space requirements, or test volume
were
barriers preventing them from adopting such a test. The need for
laboratories to maintain revenue was the most frequently cited reason
for not sending specimens to other laboratories for testing (Table
4). Relatively few laboratory directors
(19%) cited a belief that other chlamydial tests were as good as NAAT as a reason for not sending specimens to other laboratories.
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TABLE 4.
Reasons cited by laboratory directors for not sending
specimens to other laboratories for DNA amplification
testinga
|
|
 |
DISCUSSION |
We conducted serial surveys of laboratories in Washington State in
order to assess changes in testing practices for C. trachomatis between 1995 and 1998. At the time of the second
survey, 36 (40%) of the laboratories that participated in the 1995 survey had discontinued testing, while 18 new laboratories began
testing. Concurrent with this contraction in the number of laboratories
performing tests, LCR testing was adopted, primarily by large
laboratories. In 1998, approximately one-third of all tests performed
in the state were done using LCR. No laboratories reported routinely
using Amplicor PCR or amplified Gen-Probe, a finding that was confirmed
in discussions with Roche Diagnostics and Gen-Probe representatives in
the state. In contrast, the use of rapid tests, the least sensitive of
the available technologies, declined dramatically. Most of the small laboratories that used rapid tests in 1995 ceased to perform any chlamydial tests by 1998, and rapid tests were used for less than 1%
of tests in the state in 1998.
Despite the adoption of NAAT in many large laboratories, most patients
were still tested with less sensitive tests in 1998. Because the
reported sensitivities of the different tests have varied widely in
published reports, we cannot precisely estimate the number of
false-negative tests in the state attributable to the use of
less-sensitive tests. However, assuming that NAAT are 90% sensitive,
that, relative to NAAT, culture is 50 to 90% sensitive (11), and that EIA, direct fluorescent antibody, and
Gen-Probe are 45 to 65% sensitive (9), between 3,217 and
8,454 cases of C. trachomatis infection, or 21 to 40% of
all cases, may have been missed as a result of using tests other than
NAAT. Although NAAT are more expensive, cost-effectiveness data support
their use either alone (6) or as confirmatory tests for
specimens with reactive EIAs in the negative "gray zone"
(3).
Financial barriers was the most frequently cited reason for a
laboratory's not adopting more sensitive NAAT. This constraint may
diminish with more widespread use of specimen pooling (7, 8), as well as confirmatory NAAT testing of specimens with results in the negative gray zone on EIA (3), and as
competition among NAAT lowers costs and price. However, in the absence
of revised national guidelines favoring NAAT, the ever-increasing emphasis on cost containment may inhibit wider adoption of newer and
more expensive tests. Moreover, for most small-volume laboratories, limited laboratory space and expertise and potential financial losses
will remain barriers to adopting these more complex tests. These
laboratories could be encouraged to refer specimens to larger laboratories offering NAAT. In any case, small-volume laboratories perform relatively few tests in Washington State; 65% of all
lower-sensitivity tests (EIA, direct fluorescent antibody, DNA probe,
or rapid tests) were performed in laboratories doing more than 10,000 tests per year, and only 22% of such tests were done in laboratories
performing fewer than 5,000 tests per year. The consolidation of
testing into a small numbers of large laboratories may provide an
opportunity for public health officials to significantly increase the
yield of chlamydial screening programs through efforts to persuade
laboratory directors to change testing technologies.
In conclusion, we have documented the rapid adoption of NAAT for
C. trachomatis in Washington State between 1995 and 1998 and
the phasing out of rapid tests used in smaller laboratories. Increasingly, testing is being concentrated in larger laboratories. However, many of these laboratories continue to use lower-sensitivity and less-costly tests. Cost remains a formidable barrier to the more
widespread adoption of NAAT, and there may be instances in which
presently available rapid tests, despite their low sensitivity, are
more cost-effective than NAAT. For example, point-of-care rapid tests
may ensure proper treatment of persons considered unlikely to return
for test results (5). However, given the superior
sensitivity of NAAT, the ability to extend screening to community-based
settings with these tests using urine and self-collected vaginal swabs
and data supporting the relative cost-effectiveness of this technology
for detecting chlamydial infection, more widespread adoption of these
tests is warranted. Public health officials should actively promote the
use of NAAT.
 |
ACKNOWLEDGMENTS |
T.J.B. was supported by NIH training grant T35 AI 07616. M.R.G.
was supported by NIH postdoctoral training grant NIAID AI07149 and by
University of Washington NIH STD Cooperative Research Center AI31448.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Harborview
Medical Center, Box 359931, 325 9th Ave, Seattle, WA 98104-2499. Phone: (206) 731-6829. Fax: (206) 731-4151. E-mail:
golden{at}u.washington.edu.
 |
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Journal of Clinical Microbiology, August 2001, p. 2924-2927, Vol. 39, No. 8
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.8.2924-2927.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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