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Journal of Clinical Microbiology, August 2001, p. 2954-2957, Vol. 39, No. 8
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.8.2954-2957.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Characterization of Borrelia burgdorferi
Isolated from Erythema Migrans Lesions: Interrelationship of
Three Molecular Typing Methods
Radha
Iyer,1
Dionysios
Liveris,1
Atoya
Adams,1
John
Nowakowski,2
Donna
McKenna,2
Susan
Bittker,2
Denise
Cooper,2
Gary P.
Wormser,2 and
Ira
Schwartz1,2,*
Department of Biochemistry & Molecular
Biology1 and Division of Infectious
Diseases, Department of Medicine,2 New York
Medical College, Valhalla, New York 10595
Received 12 February 2001/Returned for modification 8 April
2001/Accepted 13 May 2001
 |
ABSTRACT |
Genetic diversity among Borrelia burgdorferi isolates
recovered from the skin of Lyme disease patients was assessed by
ribosomal DNA (rDNA) spacer restriction fragment length polymorphism
analysis, genomic restriction site polymorphism analysis, and plasmid
content analysis. There was a significant association between the three rDNA spacer types, the six pulsed-field gel types, and plasmid content
(P < 0.001). The association between distinct
chromosomal and plasmid markers implies a clonal origin for each genotype.
| |
TEXT |
Lyme disease, a disorder which may
affect multiple organ systems, results from infection with the
spirochete Borrelia burgdorferi. Between 1989 and 1997, 114,314 cases of Lyme disease were reported to the Centers for Disease
Control and Prevention, making Lyme disease the most common
vector-borne disease in the United States (16, 21). Early
Lyme disease is manifested by a characteristic skin rash, erythema
migrans (EM), and is frequently accompanied by systemic symptoms
(14, 15). Molecular analysis of B. burgdorferi isolates has resulted in the differentiation of B. burgdorferi sensu lato into 10 distinct species (23).
B. burgdorferi sensu stricto is the only known Lyme disease
borrelia infecting patients in North America. Significant genetic
heterogeneity among B. burgdorferi sensu stricto isolates in
North America has been reported (1, 6, 8, 13). The type
strain of B. burgdorferi sensu stricto, B31 has a large
linear genome of 910,725 bp and 21 linear and circular plasmids with a
total size of 610,694 bp (3, 7).
It has long been recognized that the clinical expression of B. burgdorferi infection is diverse (15). Possible
explanations for this variability are differences in the genotypes of
the infecting strain of B. burgdorferi. We developed a
typing method based on restriction fragment length polymorphism (RFLP)
in the 16S-23S ribosomal DNA (rDNA) spacer of B. burgdorferi
and used it to analyze clinical isolates obtained from early Lyme
disease patients (9). A highly significant association was
found between the infecting RFLP type in the skin and the presence of
spirochetemia or multiple EM lesions (25), suggesting that
differences in the clinical presentations of Lyme disease patients may,
indeed, be related to B. burgdorferi genotype. rDNA spacer
analysis provides genetic typing information for a single genomic locus
and interrogates a chromosomal region which is unlikely to have a
direct role in pathogenesis. In order to obtain additional, broader
typing information, 48 cutaneous isolates from early Lyme disease
patients were analyzed by pulsed-field gel electrophoresis (PFGE).
Subjects, skin biopsy, and cultivation.
All subjects were
adults with EM enrolled in a prospective study at the Lyme Disease
Diagnostic Center of the Westchester Medical Center, Valhalla, N.Y.
Skin biopsy specimens (2 mm) were obtained from the leading edge of
primary EM lesions and cultured in BSK-II medium as described
previously (19).
PFGE.
Spirochetes were harvested by centrifugation and washed
twice with sterile phosphate-buffered saline. The cells were
resuspended in 50 mM Tris-HCl-150 mM NaCl (pH 8.0), and an equal
volume of 1.8% low-gelling-temperature agarose (SeaPlaque; FMC Corp.,
Rockland, Maine) was added. The cells, in agarose blocks, were lysed as described previously (5). For plasmid analysis, blocks
were washed extensively with 10 mM Tris-HCl-1 mM EDTA (pH 8.0) and PFGE was performed in 0.5× Tris-borate-EDTA at 14°C on a Bio-Rad CHEF DR II electrophoresis system. One percent agarose gels were run at
a constant voltage (6 V/cm) for 19 h, with a switch time of 0.7 to
2.2 s. For chromosome restriction fragment analysis, agarose
blocks containing B. burgdorferi were incubated overnight at
37°C with 40 to 50 U of MluI in 0.5 ml of 50 mM Tris-HCl
(pH 7.5)-10 mM MgCl2-100 mM NaCl-1 mM dithioerythritol.
PFGE was performed as described above, except that a switch time of 6 to 25 s was used.
The relative proportions of the three rDNA spacer RFLP types (RSTs)
among the 48 isolates (29.2, 41.7, and 29.2% for RST1, RST2, and RST3,
respectively) were similar to those for the larger group of cutaneous
isolates reported previously (25.1, 38.3, and 30.1% for RST1, RST2,
and RST3, respectively) (10). Total genomic DNA was
digested with MluI, and the resultant fragments were
resolved by PFGE. The results, summarized schematically in Fig.
1, revealed six distinct pulsed-field gel
(PFG) patterns. Fifty-two percent (25 of 48) displayed a pattern
designated type A. An additional 16.7% (8 of 48) had the pattern
designated type B, and 12.5% (6 of 48) showed a type D pattern; the
remaining isolates were equally distributed between types C, E, and F. These patterns were all observed in a previous study of representative
B. burgdorferi isolates by Mathiesen et al.
(13) and are designated here types A to F, after their
nomenclature. Of the 65 human isolates characterized in the earlier
study, 54 (83%) were PFG type A, which was also the predominant PFG
type (52%) among the isolates in the present investigation.
Interestingly, PFG type E was observed only in ticks by Mathiesen et
al. (13), whereas three PFG type E isolates were detected
among the human isolates in the present analysis. Thus, all major North
American B. burgdorferi sensu stricto PFG types are found in
a narrowly defined geographic location (Westchester County, N.Y.) and
are infectious to humans.
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FIG. 1.
Schematic representation of six MluI PFG
types among B. burgdorferi clinical isolates. The
approximate sizes of each fragment (in kilobases) are noted.
|
|
The plasmid contents in the same isolates were also analyzed by PFGE.
Since repeated culture passage is known to result in
selective plasmid
loss (
2,
18,
20), isolates in the present
study were
analyzed between passages 2 and 5. Most isolates tested
carried all of
the plasmids previously identified in strain B31.
The most distinctive
difference among the isolates discernible
by PFGE was the presence or
absence of lp38, which was confirmed
by Southern blotting with an
ospD-specific probe (
ospD is encoded
on lp38) and
by
ospD-specific PCR (data not shown). Of the isolates
analyzed, 21 (44%) carried a copy of lp38. Palmer et al.
(
17)
recently reported the distribution of 12 linear
plasmids in 15
B. burgdorferi sensu stricto isolates by
plasmid-specific probe
hybridization. These isolates were from a broad
geographic distribution;
the specimen sources (human, tick, etc.) were
not given. They
found that lp5, lp21, and lp56 were found in no more
than 3 of
these isolates, lp17 and lp38 were present in 10 of 15 of the
isolates, and the remainder were found in at least 14 of the isolates.
The results of the present study are mostly consistent with and
extend
those of earlier study. A difference between the two studies
is the
proportion of isolates which carry lp38 (67% [10 of 15]
in the study
of Palmer et al. [
17] and 44% [21 of 27] in the
present study [
P = 0.12]). Since all the isolates in
the present
study were obtained from human EM lesions, this indicates
that
lp38 and its gene products are not required for
infectivity.
It was of interest to ascertain whether any correlation exists between
the three typing methods applied to this group of isolates.
For the
purposes of the analysis, the plasmid type (P or N) was
based on the
presence or absence of lp38. Each technique scores
for a specific and
seemingly unrelated genotypic character: sequence
heterogeneity in a
ribosomal spacer, point polymorphisms in restriction
sites distributed
across the linear chromosome, and the presence
or absence of a single
linear plasmid. If these genotypic characters
were independent, one
would expect that all possible combinations
would be observed and would
occur at equal frequencies among the
isolates tested. The data
presented in Table
1 and Fig.
2 demonstrate
that these characteristics
cosegregate with each other at a highly
significant rate (
P < 0.001). The genotype of any individual isolate
could be
designated by a combination of the three separate RSTs,
PFG types, and
plasmid types. For example, an isolate which is
RST1, is PFG type B,
and contains lp38 would have the designation
1BP. Only 10 of the 36 possible genotypes were observed among
the 48 isolates tested; 79% (38 of 48) were one of the four predominant
genotypes (1BP, 1DP, 2AN, and
3AN) (Fig.
2).
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|
FIG. 2.
Association of RST, PFG type, and plasmid type. RST and
plasmid types are represented as one of six possible combinations and
plotted versus PFG type.
|
|
Dykhuizen et al. (
4) demonstrated that there is little or
no genetic exchange between chromosomal genes in
B. burgdorferi and that there is little evidence for plasmid transfer
between
isolates; on this basis, they concluded that
B. burgdorferi is
clonal. In a separate study from that group,
linkage between
ospA and
ospC genotypes was
observed, even though these genes are encoded
on separate plasmids
(
24). The data presented here are in agreement
with those
from the earlier studies and support the clonality
of
B. burgdorferi. Several groups have reported evidence for lateral
exchange of plasmid-encoded genes in
B. burgdorferi
(
11,
12,
22). The mechanisms for such gene transfer are
not known, but
the present data suggest that it does not occur via
exchange of
entire plasmids between
isolates.
We previously reported an association between rDNA spacer RFLP and
hematogenous dissemination of
B. burgdorferi from skin
(
25). A limitation of that study was that sequence
variation
in a rDNA spacer is unlikely to be a determinant of
virulence.
In the present study, additional unrelated genomic loci were
examined
by PFGE, and a significant correlation between the results of
rDNA spacer typing and those of PFGE typing was observed. Since
rDNA
spacer typing is a PCR-based method, it does not require
cultivation
and can be performed rapidly with small quantities
of clinical
material. The present study establishes that rDNA
spacer analysis can
serve as an accurate reflection of
B. burgdorferi genotype.
| |
ACKNOWLEDGMENTS |
We thank S. Casjens, R. Marconi, S. Norris, J. Purser, and B. Stevenson for providing probes or primer sequences.
This work was supported by Public Health Service grant AR41511 from the
National Institutes of Health.
| |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biochemistry & Molecular Biology, New York Medical College, Valhalla, NY 10595. Phone: (914) 594-4658. Fax: (914) 594-3455. E-mail: schwartz{at}nymc.edu.
| |
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Journal of Clinical Microbiology, August 2001, p. 2954-2957, Vol. 39, No. 8
0095-1137/01/$04.00+0 DOI: 10.1128/JCM.39.8.2954-2957.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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