Previous Article | Next Article ![]()
Journal of Clinical Microbiology, June 2002, p. 1947-1957, Vol. 40, No. 6
0095-1137/02/$04.00+0 DOI: 10.1128/JCM.40.6.1947-1957.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Research Service, Louis Stokes Veterans Affairs Medical Center, Cleveland, Ohio 44106,1 Basilea Pharmaceutica Ltd., Basel, Switzerland,2 Infectious Diseases Division, University Hospitals, Cleveland, Ohio 441063
Received 6 September 2001/ Returned for modification 31 October 2001/ Accepted 1 March 2002
|
|
|---|
|
|
|---|
Immunological methods have long been applied to the analysis and classification of ß-lactamases (4, 5, 7-9, 11, 13, 17, 18, 22-24, 31, 33, 34). Antibody-based methods offer an advantage in that they are easily performed and highly sensitive. Polyclonal antibodies recognize multiple epitopes and can detect closely related variants of ß-lactamases. Hence, polyclonal antibodies were used early on to classify ß-lactamases and understand catalysis (33).
Most recently, antibodies against ß-lactamases have been developed to assess enzyme expression in a number of studies investigating the effects of point mutations. Studies with anti-ROB-1 ß-lactamase, anti-TEM-1 ß-lactamase, and anti-PSE-4 ß-lactamase antibodies have addressed in a qualitative manner the effects of point mutations on steady-state ß-lactamase levels (10, 14, 25, 27, 30). To our knowledge, only two anti-ß-lactamase antibodies have been used in both Western blot and enzyme-linked immunosorbent assay (ELISA) formats to measure TEM-1 and PC1 ß-lactamases (15, 22).
Here, we describe the production, purification, and characterization of polyclonal anti-SHV-1 and anti-CMY-2 ß-lactamase antibodies. We chose to develop these antibodies because SHV-1 is the second most common class A ß-lactamase found in Escherichia coli and Klebsiella pneumoniae, and CMY-2 ß-lactamase is the most common plasmid-determined AmpC ß-lactamase (3, 21). Our goals were to use these antibodies to detect the presence of SHV and AmpC ß-lactamases in clinical and laboratory strains and to develop a highly sensitive ELISA for each. The ELISA format can facilitate the simultaneous screening of multiple clinical isolates for the presence of SHV and AmpC ß-lactamases. Furthermore, ELISAs can be used to measure (quantitate) relative ß-lactamase production. In the research setting, the ELISA format can be a very useful tool for studying the induction and relative amounts of SHV and AmpC ß-lactamases.
|
|
|---|
and E. coli DH10B were obtained from Gibco BRL Life Technologies (Grand Island, N.Y.). E. coli J53-2 was previously described (28). The E. coli strain containing the OXA-1 ß-lactamase was a kind gift from George A. Jacoby (Lahey Clinic, Burlington, Mass.). Proteus vulgaris harboring K-1, Enterobacter cloacae with P99, and K. pneumoniae containing ACT-1 ß-lactamases were kind gifts from Patricia Bradford (Wyeth-Ayerst Laboratories, Pearl River, N.Y.). The Enterobacter aerogenes strain with an AmpC ß-lactamase was a kind gift from Reuben Ramphal (University of Florida, Gainesville). A total of 101 clinical isolates were studied in validating our ELISAs. Fred Tenover (Centers for Disease Control and Prevention, Atlanta, Ga.) and Jan Patterson (University of Texas, Southwest, San Antonio) kindly provided the clinical isolates with uncharacterized ß-lactamases, in set 1 and set 2, respectively. The identities of isolates in set 1 were unknown. Set 2 consisted of 14 K. pneumoniae isolates. Set 3 comprised 46 K. pneumoniae isolates kindly provided by David Paterson (University of Pittsburgh, Pittsburgh, Pa.). In addition, Donna O'Black (University of Cincinnati, Cincinnati, Ohio) provided 11 E. coli, 1 Klebsiella oxytoca, and 3 K. pneumoniae isolates. Two E. cloacae, one K. oxytoca, one E. coli, four K. pneumoniae, two Hafnia alvei, one Morganella morganii, and four Citrobacter freundii isolates were collected and kindly provided by Curtis J. Donskey (LSVAMC).
Plasmid pUC18, encoding the TEM-1 ß-lactamase, was a kind gift from Louis B. Rice (LSVAMC). The SHV-1 ß-lactamase was cloned in pBC SK(-) (Stratagene, La Jolla, Calif.) as previously described (28). E. coli J53-2-derived strains 194 and 194-61 possess plasmid p194 or a subclone of p194 in pBC SK(-); both encode the CMY-2 ß-lactamase. All bacteria were grown in Luria-Bertani (LB) broth with either ampicillin or chloramphenicol selection.
ß-Lactamase protein expression and purification.
The SHV-1 and CMY-2 ß-lactamases expressed in E. coli were liberated by periplasmic fractionation and purified according to previously described methods (19, 20; M. S. Helfand, A. M. Hujer, and R. A. Bonomo, submitted for publication). In brief, a 5-ml overnight culture of E. coli DH10B or DH5
harboring the SHV-1 or CMY-2 ß-lactamase gene cloned into a high-copy-number phagemid vector, pBC SK(-), was used to inoculate 1.5 liters of LB broth containing 100 µg of ampicillin or 20 µg of chloramphenicol (Sigma Chemical Co., St. Louis, Mo.)/ml. Cells were grown overnight, pelleted, and stored at -20°C until ß-lactamase purification. Cells were resuspended in 200 ml of 50 mM Tris HCl (pH 7.4) with freshly prepared lysozyme (Sigma) added to a final concentration of 10 µg/ml and incubated for 15 min at room temperature. EDTA was added to a 1 mM concentration with constant mixing. The crude lysate was filtered through a 0.22-µm-pore-size Nalgene bottle-top filter (Fisher, Pittsburgh, Pa.) and concentrated by using a Diaflo 10-kDa ultrafiltration membrane (Amicon Inc., Beverly, Mass.). The ß-lactamase was purified from the crude lysate by preparative isoelectric focusing in an Ultrodex/Ampholine (pH gradient, 3.5 to 10) gel bed prepared according to the manufacturer's specifications (Amersham Pharmacia Biotech, Piscataway, N.J.). The Ultradex gel was run overnight (4°C) at a constant power of 8 W on a Multiphor II isoelectric focusing apparatus (Amersham Pharmacia Biotech). ß-Lactamase activity in the gel was identified by using the chromogenic cephalosporin nitrocefin (Becton Dickinson, Cockeysville, Md.). This visual identification was accomplished by applying a solution of 100 µM nitrocefin to the filter paper. A yellow-to-pink color change was observed in the ß-lactamase-containing area of the gel.
Areas of the gel containing ß-lactamase activity were cut out, and ß-lactamase was eluted with 20 mM diethanolamine (pH 8.3). Ampholines were removed from the eluate by dialysis against 20 mM diethanolamine (pH 8.3). The sample was then concentrated and resolved with 5% stacking-12% separating sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE). Purity was assessed by Coomassie brilliant blue R250 staining. The protein concentration was determined by a Bio-Rad (Hercules, Calif.) protein assay with bovine serum albumin (BSA) as a standard.
Purified AmpC ß-lactamases isolated from C. freundii, E. cloacae, M. morganii, Pseudomonas aeruginosa, and Staphylococcus aureus PC1 were obtained from Roche Laboratories, Basel, Switzerland. Homology of these enzymes to CMY-2 ß-lactamase was defined by DNA analysis comparisons (Table 1) carried out by using DNASIS for Windows (Hitachi Software Genetic Systems, South San Francisco, Calif.).
|
View this table: [in a new window] |
TABLE 1. Percent homology to CMY-2 and anti-CMY-2 antibody recognitiona
|
Anti-CMY-2 and anti-SHV-1 antibody purification. Polyclonal immunoglobulin G antibodies were isolated from the rabbit serum by using Protein G column purification. Five milliliters of serum was added to 10 ml of phosphate-buffered saline (PBS) (pH 7.4), and the mixture was run over a 5-ml Hi-Trap protein G column (Sigma) with positive pressure at a flow rate of 0.5 ml/min. The bound anti-SHV-1 or anti-CMY-2 antibody was eluted from the column with 0.1 M glycine (pH 2.7) in 1-ml aliquots and neutralized with 100 µl of 1 M Tris HCl (pH 8.8). The antibody concentration was determined by measuring the optical density (OD) at 260 nm (OD260) with a Fisher spectrophotometer. Approximately 15 mg of purified immunoglobulin G was obtained per 5 ml of serum for both anti-SHV-1 and anti-CMY-2 antibodies on one column pass. The antibody eluate was dialyzed against PBS (pH 7.4) and divided into 0.5-ml aliquots for final storage at -20°C.
Immunoblotting. Clinical and laboratory isolates possessing ß-lactamases were grown in LB broth to an OD600 of 0.5. Fifty microliters of each culture was mixed with SDS-PAGE sample buffer, resulting in final concentrations of 62.5 mM Tris base (pH 6.8), 2% glycerol, 2% SDS, 100 mM dithiothreitol, and 0.02% bromophenol blue. These samples were then boiled. A 7.5-µl aliquot was subjected to electrophoresis and transferred to polyvinylidene difluoride membranes (Boehringer Mannheim, Indianapolis, Ind.). After overnight incubation in blocking buffer (5% BSA [Amresco, Solon, Ohio], 20 mM Tris HCl-buffered 150 mM saline [pH 7.5]), ß-lactamase present on the blots was detected by incubation with either 1 µg of anti-SHV-1 or anti-CMY-2 antibody/ml or a 1:100 dilution of anti-TEM antibody, kindly provided by T. Palzkill (Baylor College of Medicine, Houston, Tex.). Antibody incubation of the immunoblots was carried out for 3 h at room temperature. The membranes were washed four times for 10 min each time in Tris-buffered saline (pH 7.4) and subsequently incubated with a 1:2,000 dilution of horseradish peroxidase-conjugated protein G (Bio-Rad). All antibody-protein G incubations were done in blocking buffer. After four more washes, the membranes were processed for film exposure by using an ECL kit in accordance with the manufacturer's protocol (Amersham Pharmacia Biotech).
Antibody recognition determinations by immunoblotting. Purified SHV-1 and CMY-2 ß-lactamases were diluted across a range of concentrations. The following amounts were used for SDS-PAGE loading: 100, 50, 10, 1, 0.1, and 0.01 ng. The protein samples were electrophoresed and transferred to polyvinylidene difluoride membranes as stated above. Two separate blots were probed with 1 µg of anti-SHV-1 or anti-CMY-2 antibody/ml. The level of antibody recognition for each was determined by immunoblotting with chemiluminescence exposure to film for 1 min.
ELISAs for SHV and AmpC ß-lactamases. Ninety-six-well Immulon-4 enzyme immunoassay plates (Fisher) were coated overnight with 4 µg of anti-SHV-1 or anti-CMY-2 polyclonal antibody/ml diluted in carbonate buffer (pH 9.5). Plates were washed six times with PBS containing 0.05% Tween 20 (Bio-Rad) and blocked with 5% BSA in PBS for 2 h at room temperature. Purified SHV-1 and AmpC ß-lactamases were serially diluted to fixed concentrations, or 100-µl aliquots of overnight bacterial cultures were boiled for 10 min and serially diluted. These dilutions were applied to the enzyme immunoassay plates, incubated for 2 h, washed, and incubated for an additional hour with 2 µg of biotinylated anti-SHV-1 or anti-CMY-2 polyclonal antibody/ml.
Concentrations of coating and biotinylated detecting antibodies were varied initially to empirically determine the best concentrations for assessing the presence of SHV or AmpC ß-lactamase. Between all steps following sample incubation, washes were done six times with 0.05% Tween 20-PBS. Plates were then incubated with a 1:3,000 dilution of streptavidin-horseradish peroxidase (Zymed Laboratories, South San Francisco, Calif.) for 30 min, followed by development with o-phenylenediamine and H2O2 diluted in citric acid buffer (pH 5.5) (Sigma). Development was terminated by the addition of H2SO4 to a concentration of 0.5 M. OD492 values were obtained with a Cerus ELISA plate reader and compared to those for serially diluted, purified SHV-1 or CMY-2 ß-lactamase used as an internal point of reference. Averaging the OD values of the standards, plotting OD against concentration in nanograms per milliliter, and generating a slope determined the amount of CMY-2 or SHV ß-lactamase present in the samples. The slope of the line was then used to calculate the amount of ß-lactamase present.
PCR analysis for the presence of ß-lactamases. SHV ß-lactamase primers (5' ATGCGTTATATTCGCCTGTG 3' and 5' TGCTTTGTTATTCGGGCCAA 3' [Genosys Biotech]) were used to amplify the blaSHV gene (GenBank accession number AF124984). AmpC ß-lactamase primers (5' ATCAAAACTGGCAGCCG 3' and 5' GAGCCCGTTTTATGGACCCA 3' [Genosys Biotech]) were designed from homologous regions of the P99, CMY-2, and ACT-1 bla genes (GenBank accession numbers X07274, X91840, and U58495, respectively); they were used to amplify AmpC ß-lactamase genes.
A 10-µl aliquot of an overnight culture was diluted 1:10 with water and boiled for 10 min. PCR amplification was then performed with 10 µl of this dilution as the DNA template. PCR conditions included 35 cycles of amplification at a denaturation temperature of 94oC for 1 min, an annealing temperature of 60°C for 1 min, and an extension temperature of 72oC for 1 min. This step was followed by a final extension at 72oC for 10 min. PCR products were run on 1% agarose gels, stained with ethidium bromide, and photographed with UV illumination.
X174 replicative-form DNA HaeIII fragments (Gibco BRL Life Technologies) were used to assess PCR product sizes.
Statistical analysis. Statistical analysis was performed on data gathered from the 101 clinical isolates. Sensitivity, specificity, and negative and positive predictive values were calculated for the SHV and AmpC ELISAs; a kappa statistic was assigned for each as well (2, 16).
|
|
|---|
![]() View larger version (39K): [in a new window] |
FIG. 1. Immunoblotting. (a) Immunoblot of various amounts of purified CMY-2 ß-lactamase probed with 1 µg of anti-CMY-2 antibody/ml. (b) Immunoblot of various amounts of purified SHV-1 ß-lactamase probed with 1 µg of anti-SHV-1 antibody/ml. (c) Immunoblot of various ß-lactamase-producing strains probed with 1 µg of anti-CMY-2 antibody/ml. Strains, listed from left to right, included E coli DH10B carrying plasmid pBC SK(-) with the SHV-1 ß-lactamase, strains producing K-1 and ACT-1 ß-lactamases, strain DH5 /pUC18 producing the TEM-1 ß-lactamase, a cefepime-resistant E. aerogenes strain producing a ß-lactamase (EA), and a strain expressing the P99 Amp C ß-lactamase; in addition, E. coli J53-2-derived strains 194-61 and 194 and E. coli strain 20 (EC20) are clinical and laboratory strains producing CMY-2 ß-lactamase. (d) Identical immunoblots of strains E. coli DH10B/pUC18 producing TEM-1 ß-lactamase, E. coli DH10B/pBC SK(-) producing SHV-1 ß-lactamase, and E. coli J53-2-derived 194-61 producing CMY-2 ß-lactamase probed with anti-TEM antibody (1:100 dilution) or 1 µg of anti-SHV antibody/ml.
|
![]() View larger version (49K): [in a new window] |
FIG. 2. Effects of varying coating and detecting antibody concentrations in the SHV ELISA. Purified SHV-1 ß-lactamase was diluted across a range of concentrations and run in triplicate for each detecting antibody concentration (2, 4, and 6 µg of biotinylated anti-SHV antibody/ml). A separate standard curve was generated for each detecting antibody concentration and was used to calculate SHV amounts in nanograms per milliliter. Values plotted are the means for triplicate samples. The sample range never exceeded 7% of the plotted value and was not included in the graph. The effect of varying the coating antibody concentration was examined in a similar manner.
|
Generation of ELISA standard curves. Purified SHV-1 or CMY-2 ß-lactamases, at known concentrations, were used to generate a standard curve for every ELISA performed (Fig. 3). The slope of the line generated was used to calculate the amount of ß-lactamase present in the samples.
![]() View larger version (17K): [in a new window] |
FIG. 3. ELISA standard curves. Purified SHV-1 and CMY-2 ß-lactamases at known concentrations were run in duplicate and used to generate a standard curve for every ELISA that was performed.
|
![]() View larger version (26K): [in a new window] |
FIG. 4. Minimum concentrations of various AmpC ß-lactamases needed in order to be detected by the AmpC ELISA. By assaying known concentrations of the various purified enzymes, we demonstrated that as DNA sequence homology to CMY-2 decreased, the minimum concentration of the ß-lactamase that could be reliably detected increased. Purified AmpC ß-lactamases were CMY-2 from E. coli (CMY-2), C. freundii (C. f.), E. cloacae (E. cloa), M. morganii (M. mor), and S. aureus PC1 (PC1).
|
|
View this table: [in a new window] |
TABLE 2. Percent homology to SHV-1 and anti-SHV-1 antibody recognitiona
|
|
View this table: [in a new window] |
TABLE 3. Results for set 1 (unknowns)
|
![]() View larger version (52K): [in a new window] |
FIG. 5. ELISA validation. (a) Eleven clinical isolates (set 1) were blindly screened with the AmpC ELISA. Shown are AmpC ELISA results and results for two positive controls (P99 ß-lactamase and cefepime-resistant E. aerogenes [EA]). All unknown samples were diluted 1:5 with 0.1% BSA in PBS. (b) PCR analysis of 11 clinical isolates (set 1) with SHV primers and AmpC primers. PCR amplicons were run on a 1% ethidium bromide-stained agarose gel. Lanes: M, DNA sizing standard ( X174 replicative-form DNA HaeIII fragments); A, K. pneumoniae containing ACT-1 ß-lactamase amplicons; P, P99 ß-lactamase amplicons; C, 194-61 CMY-2 ß-lactamase amplicons; B, blank; S, SHV ß-lactamase amplicons.
|
|
View this table: [in a new window] |
TABLE 4. Results for set 2 (K. pneumoniae)
|
|
View this table: [in a new window] |
TABLE 5. Results for set 3 (various organisms)
|
|
View this table: [in a new window] |
TABLE 6. Performance characteristics of SHV and AmpC ELISAs
|
![]() View larger version (28K): [in a new window] |
FIG. 6. ELISA determination of SHV ß-lactamase production. This graph illustrates the utility of the SHV ELISA for quantifying the effect of a particular amino acid substitution on ß-lactamase production. Each measurement represents the median of four different experiments. In this case, the amino acid chosen for site saturation mutagenesis was at position 69 in SHV-1.
|
|
|
|---|
Several factors encouraged us to develop the ELISAs. Each antibody could detect as little as 1 ng of purified ß-lactamase by immunoblotting, and very little background was observed when whole bacterial lysates were assayed. Thus, other bacterial proteins would not contribute substantially to nonspecific background binding in the ELISA format. Also, the ELISA format was particularly attractive due to its ability to screen large numbers of samples rapidly and quantitatively. Both ELISAs could recognize less than 100 pg of their respective purified protein/ml, a recognition level 1 log unit higher than that of immunoblotting. When 4 µg of unlabeled antibody/ml was used for coating and 2 µg of biotinylated antibody/ml was used for detection, the sensitivity of the assay was maximized and nonspecific binding was kept to a minimum (Fig. 2).
We have also tested the ability of the polyclonal SHV-1 antibody to detect SHV-1 variants. It is capable of detecting SHV-2, SHV-5, SHV-8, and the other SHV ß-lactamases engineered by site-directed mutagenesis (Fig. 6) (12; Helfand et al., submitted; Hujer et al., submitted). The SHV ELISA provides us with a method for examining total levels of SHV ß-lactamase. This method can also be exploited for the purification of SHV ß-lactamases for other types of studies (4).
The anti-CMY-2 antibody recognized closely related AmpC ß-lactamases. It recognized the CMY-2, P99, and ACT-1 ß-lactamases as well as the AmpC enzymes of E. aerogenes, E. cloacae, C. freundii, and M. morganii. Due to the broad cross-reactivity, we referred to this antibody as an anti-AmpC antibody. It did not recognize the TEM-1, SHV-1 (or its variants), K-1, or OXA-1 ß-lactamases or the ß-lactamases of P. vulgaris and P. aeruginosa (data not shown). We also demonstrated that as homology to CMY-2 decreases, the minimum level required for detection of the specific ß-lactamase increases. Hence, we have primarily used the AmpC ELISA for screening purposes, although it can be used quantitatively for CMY-2. For example, an OD of 0.158 may represent 620 pg of CMY-2/ml, but for the AmpC enzyme of E. cloacae, which has 71% homology to CMY-2, the same OD will represent a far higher concentration of the enzyme. An alternative approach is to develop standard curves for other purified AmpC ß-lactamases; doing so might allow us to examine ß-lactamase induction specific to bacterial strains with known AmpC ß-lactamases.
A direct application of the ELISAs is in the qualitative screening of clinical isolates. Our analysis of 101 isolates is an example of such an application. To verify the ELISA results, PCR amplification was performed on all samples with primers designed from homologous regions of several blaAmpC genes and SHV primers designed to amplify the blaSHV gene.
Overall, there was excellent agreement between the PCR and ELISA results. Given these data, we calculated the sensitivity of the SHV ELISA to be 98% and the specificity to be 96%. The kappa statistic, which determines how reliable data interpretation is by measuring agreement and providing an idea of how much the data are removed from random distribution, was calculated to be 0.94 for the SHV ELISA. These numbers argue for a very accurate assaying method. Also, many samples can be processed simultaneously, far more than can be processed by PCR and gel loading in the same time frame.
The results for the AmpC ELISA were similar. We calculated the sensitivity of the AmpC ELISA to be 95% and the specificity to be 96%. The kappa statistic was calculated to be 0.88.
The positive and negative predictive values for each ELISA were very high, indicating that these ELISAs are a good way of assaying for the presence of the respective ß-lactamases. It is also interesting that two isolates of C. freundii were PCR positive but AmpC ELISA negative. This species is known to have an inducible AmpC ß-lactamase. By growing these isolates in the presence of cefoxitin, we may be able to induce the AmpC ß-lactamase and detect its presence with an ELISA.
A novel way to use the SHV ELISA is in the quantification of SHV ß-lactamase. We examined the total levels of SHV ß-lactamase as a result of point mutations in a number of experiments (10, 12; Helfand et al., submitted; Hujer et al., submitted). Currently, this application has been used for the analysis of site saturation mutagenesis of Ambler positions Gly238, Asn104, Ser130, and Met69 (1, 12; Helfand et al., submitted; Hujer et al., submitted).
In conclusion, polyclonal antibodies were raised to detect and quantify SHV and AmpC ß-lactamases. Low-level detection (less than 100 pg) and selective recognition of SHV by the SHV ELISA allowed us to quantify differences in the amounts of the SHV class A ß-lactamase. The AmpC ELISA possessed a similar detection threshold. The polyclonal AmpC antibody was less selective in that it could recognize other AmpC ß-lactamases. The AmpC ELISA will continue to be used primarily as a qualitative screening tool for clinical isolates. It has not escaped our attention that this technology can be modified to detect pre- and postinduction AmpC ß-lactamases in clinical isolates. In the research setting, this ELISA can also be used to quantitatively measure differences in ß-lactamase expression after induction of AmpC enzymes. Used appropriately, immunology-based technology (ELISA and immunoblotting) can permit the detection of ß-lactamases in clinical strains and can permit careful study of the effects of point mutations on ß-lactamases and exploration of issues of induction and regulatory mechanisms affecting ß-lactamase production. The sensitivity and specificity of both ELISAs are comparable to those of many commercially available diagnostic tests and indicate that the ELISAs represent a very rapid and accurate way of screening for the presence of AmpC and/or SHV ß-lactamases in clinical isolates.
We thank P. N. Rather, R. M. Rerko, and C. R. Bethel for careful review of the manuscript and valuable advice.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»