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Journal of Clinical Microbiology, January 2003, p. 267-272, Vol. 41, No. 1
0095-1137/03/$08.00+0 DOI: 10.1128/JCM.41.1.267-272.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
M. A. Pfaller,1* S. A. Messer,1 A. K. Houston,1 L. Boyken,1 R. J. Hollis,1 I. Furuta,2 and R. N. Jones3,4
Medical Microbiology Division, Department of Pathology, University of Iowa College of Medicine, Iowa City,1 The JONES Group/JMI Laboratories, North Liberty, Iowa,3 Kinki University School of Medicine, Ohnohigashi, Osakasayama, Osaka, Japan,2 Tufts University School of Medicine, Boston, Massachusetts4
Received 9 May 2002/ Returned for modification 4 August 2002/ Accepted 22 October 2002
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Recently, strains of C. neoformans expressing heteroresistance to fluconazole have been described (18). Mondon et al. (18) investigated serial isolates from two infected patients and demonstrated that each isolate produced cultures with heterogeneous compositions of fluconazole susceptibility and that the proportion of subpopulations resistant to fluconazole (64 µg/ml) increased steadily over time. This selection process was reproduced in vitro.
The present study was performed to investigate the prevalence of heteroresistant strains of C. neoformans among clinical isolates and to characterize the heteroresistant phenotypes.
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Antifungal agents. Reagent grade fluconazole powder was obtained from Pfizer. Stock solutions were prepared in water. The fluconazole stock solution was diluted with RPMI 1640 medium (Sigma, St. Louis, Mo.) buffered to pH 7.0 with 0.165 M morpholinepropanesulfonic acid (MOPS) buffer (Sigma) and was dispensed into 96-well microdilution trays. Trays containing an aliquot of 0.1 ml in each well were sealed and frozen at -70°C until needed.
E test strips containing fluconazole (0.016 to 256 µg/ml) were obtained from AB BIODISK (Solna, Sweden).
Susceptibility testing. Broth microdilution MICs were determined according to the method of the NCCLS (20, 25). The yeast inoculum was adjusted spectrophotometrically to match the turbidity of a 0.5 McFarland standard and diluted to a concentration of 1 x 103 to 5 x 103 cells/ml in RPMI 1640 medium. Each well of the microdilution tray containing 0.1 ml of RPMI 1640 medium with antifungal agents was inoculated with a 0.1-ml aliquot of the yeast preparation. The final concentrations of fluconazole ranged from 0.125 to 128 µg/ml. In each case, the inoculum size was verified by colony counting. The microdilution trays were incubated at 35°C. The MIC endpoints were read visually following 72 h of incubation. The MIC of fluconazole was defined as the lowest concentration that produced a 50% reduction in growth (prominent decrease in turbidity) compared with that of the drug-free growth control (5, 20, 22, 25).
E tests (11) and agar dilution screening (13) were also performed to determine susceptibility to fluconazole. For the E test, 90-mm-diameter plates containing agar at a depth of 4.0 mm were used. The agar formulations used for the E test consisted of RPMI 1640 medium supplemented with 1.5% agar and 2% glucose and buffered with MOPS. The agar surface was inoculated by using a nontoxic swab dipped in a cell suspension adjusted spectrophotometrically to the turbidity of a 1.0 McFarland standard. After excess moisture was absorbed into the agar and the surface was completely dry, an E test strip was applied to each plate. The plates were incubated at 35°C and read after 48 and 72 h. The MIC was read at the lowest concentration at which the border of the elliptical inhibition zone intercepted the scale on the strip. Any growth, such as microcolonies, throughout a discernible inhibition ellipse was ignored (11).
The agar dilution method was performed as previously described by Kirkpatrick et al. (13).
Screening of heteroresistant isolates. Cell suspensions (1 x 103 to 5 x 103 CFU/ml) in sterile saline were plated on PDA plates containing fluconazole at concentrations four to eight times higher than the MICs for the respective isolates. The isolates for which fluconazole MICs were 16 to 32 µg/ml were plated on plates containing 64 µg of fluconazole per ml. The growth pattern was read after 72 h of incubation at 30°C, and the isolates were regarded as possibly heteroresistant when colonies grew on a plate containing fluconazole.
Resistance of clonal populations. Analysis of fluconazole heteroresistance was performed by the method of Mondon et al. (18). A single colony from the growth of each isolate was suspended in sterile saline. Cells were counted with a hemocytometer and diluted to approximately 3 x 103 CFU per ml. An aliquot of 100 µl of the suspension was plated on PDA without fluconazole or with 8, 16, 32, 64, or 128 µg of fluconazole/ml. For each concentration, three plates were inoculated. The number of colonies that grew on plates containing fluconazole at 30°C for 72 h was compared with the number that grew on plates without fluconazole. When heteroresistant clones were selected, the clones were also passaged on PDA with stepwise increasing concentrations of fluconazole (up to 64 µg/ml). At each passage, the plates were incubated at 30°C for 72 h.
Quality control. Candida parapsilosis ATCC 22019 and Candida krusei ATCC 6258 were used as quality control organisms and were included each time a set of isolates was tested (20, 22).
Strain typing. Electrophoretic karyotyping by using a contour-clamped homogeneous electrophoretic field system (CHEF-DRII; Bio-Rad, Richmond, Calif.) was performed to confirm molecular relatedness among the various heteroresistant clones. DNA samples were prepared as described previously (2, 21). Electrophoresis was performed in 1.0% agarose (Seakem GTG agarose; FMC Bioproducts) and 0.5x TBE (0.5 M Tris, 0.5 M sodium borate, 0.005 M Na2EDTA) at 14°C and 4.5 V/cm. Each gel was run for 48 h with the switch time ramping from 120 to 280 s.
Effect of temperature on expression of resistance. The influence of temperature on the expression of heteroresistance was studied at temperatures of 30 and 35°C.
Stability of fluconazole resistance in vitro. Resistant subclones were transferred daily (50 µl) into 5 ml of fresh fluconazole-free Sabouraud modified antibiotic medium 3 (BBL, Cockeysville, Md.) at 30 and 35°C. At each passage, the proportion of subpopulations resistant to fluconazole (64 µg/ml) was determined by subculturing onto fluconazole-containing agar plates. Likewise, the fluconazole MIC for each subclone was determined after each passage by using both broth microdilution and E test methods.
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A single clone of each isolate, selected at random from the colonies grown on PDA, showed a heterogeneous composition in which most of the cells were susceptible but in which some cells demonstrated the ability to grow at fluconazole concentrations that were at least fourfold higher than the original MIC (Fig. 1). For comparison, five additional isolates which failed to grow on screening plates were investigated for the existence of heteroresistant subpopulations and showed clear cutoff points, failing to grow on plates containing fluconazole at concentrations greater than two times the respective MICs (data not shown).
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FIG. 1. Population analysis of the five isolates which were screened on fluconazole (FLCZ)-containing medium. Values on the y axis indicate the percentage of clonal populations which grew on the plate containing different concentrations of fluconazole (x axis).
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TABLE 1. Comparison of antifungal susceptibilities of parent isolates and their heteroresistant clones
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128 µg/ml by both the E test and the agar dilution method. Broth microdilution MICs for resistant clones were two- to eightfold higher than those for parent isolates, again suggesting heteroresistance. The wide variance between MICs obtained by the broth microdilution and agar-based methods may be attributed to the enhanced growth produced by the increased amount of glucose (2% supplementation) contained in the agar medium. Similar medium-specific differences have been observed previously (11, 13, 18, 25).
Resistant clones. With three strains, clones selected on PDA with 64 µg of fluconazole per ml demonstrated a homogenous population of highly resistant cells (Table 2). One hundred percent of the inoculated cells were able to grow on agar with 64 µg of fluconazole per ml at 30°C. In contrast, the resistant clone of strain 20.074.013 failed to grow on agar with 64 µg of fluconazole per ml. Although the resistant clone of strain 20.074.039 grew on agar with 64 µg of fluconazole per ml, growth represented only 3.4% of the starting inoculum, similar to that of the parent strain (2.1%).
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TABLE 2. Percentage of subpopulation of resistant clones which grew on agar plates supplemented with 64 µg of fluconazole per ml
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FIG. 2. Stability of fluconazole resistance after daily transfers in drug-free medium at 30°C. Shown are the MICs determined from E tests and the percentage of positive growth on medium containing 64 µg of fluconazole per ml for homogeneously resistant clones that were selected on medium with 64 µg of fluconazole per ml. , 20.021.051-64; , 20.067.025-64; x, 20.067.061-64.
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Strain typing. Although the karyotypes of the five isolates differed from each other, each parent and resistant clone had the identical karyotype, confirming the absence of cross-contamination between isolates during the experimentation process (data not shown).
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The heteroresistant phenotype has also been observed in Candida albicans (14, 15). The recent study by Marr et al. (15) identified serial isolates from two bone marrow transplant patients and demonstrated that initial isolates from these patients produced cultures with heterogeneous compositions in fluconazole susceptibility. Rapid induction of highly resistant isolates, which subsequently caused disseminated infection, during fluconazole therapy was found to be associated with this heterogeneous phenotype (14, 15). Furthermore, this rapid selection process was reproduced in vitro (15). These facts suggest the clinical significance of the heteroresistant phenotype as a potential cause of the failure of fluconazole treatment in immunosuppressed patients.
Whether the heteroresistant phenotype in C. neoformans accounts for the clinical failures of fluconazole therapy is currently unknown. Although the fluconazole heteroresistance reported in the study by Mondon et al. (18) was associated with recurrent cryptococcal meningitis, the patient was not treated with fluconazole.
Heteroresistance to methicillin among staphylococci is well known (10, 16), and the degrees of the heterogeneity and stability of the resistant clones have been shown to be influenced by environmental factors such as temperature, osmolarity, pH, light, anaerobiosis, chelating agents, and metal ions (16). In the present study, the heteroresistant phenotype of C. neoformans was found to be affected by incubation temperature and growth on agar medium, which supports and extends findings reported previously (18). These characteristics may be of interest with regard to clinically resistant isolates. Since in vitro resistance to fluconazole remains uncommon among C. neoformans isolates despite extensive use of this agent for maintenance therapy or prophylaxis (5, 6, 22, 30), a 4.7% rate of heteroresistance seems quite high. Brandt et al. (6) compared the antifungal susceptibilities of two collections of C. neoformans isolates obtained through active laboratory-based surveillance from 1992 to 1994 (368 isolates) and from 1996 to 1998 (364 isolates). They found that resistance to fluconazole in C. neoformans was uncommon and had not changed significantly with time over the past decade. Those authors also analyzed 172 serial isolates from 71 AIDS patients and found that there was little change in the fluconazole MIC in the majority of cases (6). Although we were not able to clearly assess the relationship between the heteroresistance phenotype and clinical resistance in vivo, it seems that fluconazole heteroresistance might not be observable in the majority of clinical cases because of the temperature dependence.
On the other hand, this study confirmed that fluconazole resistance can be developed rapidly through stepwise induction by fluconazole exposure. Three clones were subcultured successfully at fluconazole concentrations up to 64 µg/ml by exposure to increasing concentrations of the drug. Inducible azole resistance has been documented previously for other yeasts such as C. albicans (7, 15), Candida glabrata (3), and Candida dubliniensis (19). In the clinical situation, serial isolates of C. neoformans from AIDS patients generally show no increase in fluconazole resistance (6). However, the emergence of clinically significant resistance to fluconazole during therapy has been reported in individual cases of recurrent cryptococcosis (1, 4, 24; Viard et al., letter). Brandt et al. (6) reported that greater-than-fourfold changes in MICs were seen in eight patients and documented an intriguing case in which fluconazole MICs for serial isolates increased stepwise from 4.0 to 64 µg/ml over 18 months of fluconazole maintenance therapy without subtype changes analyzed by genotype (5, 6). Thus, the possibility that stepwise development of fluconazole resistance in vivo may occur during fluconazole therapy clearly exists. Our findings in vitro complement these reports.
The molecular mechanism of fluconazole resistance in C. neoformans has not yet been clearly elucidated. Changes in the affinity of the target enzyme (sterol 14
-demethylase) and decreases in the cellular content of fluconazole have been found to be responsible for the resistance in isolates with low-level and high-level resistance, respectively (27). It is likely that multiple mechanisms, such as decreased target affinity, drug uptake defects, induction of resistance genes that encode multidrug efflux pump proteins, or overexpression of the target enzymes, all play a role (9, 28). In C. albicans, induction of azole resistance was associated with an increase in mRNA specific for the CDR ATP-binding cassette transporter efflux pump (15). A similar gene encoding a protein related to several eukaryotic multidrug resistance proteins, CneMDR1, has been identified in a clinical isolate of C. neoformans (26). Although we did not examine the molecular mechanisms of resistance, gene expression and transcriptional regulation of such genes may play an important role in the heteroresistant phenotype. In this study, with three isolates, clones selected on PDA with 64 µg of fluconazole per ml demonstrated a homogenous population of highly resistant cells. In contrast, the resistant clone of strain 20.074.013 failed to grow on agar with 64 µg of fluconazole per ml. Although the resistant clone of strain 20.074.039 grew on plates with 64 µg of fluconazole per ml, the growth represented only 3.4% of the starting inoculum, similar to that of the parent strain. We also found that the high-level resistance was reversible after serial passage in drug-free medium. This transient resistance was also seen among heteroresistant isolates of C. neoformans (18) and C. albicans (14, 15).
The process of development of fluconazole resistance in C. neoformans may be quite varied. Recently, Xu et al. (29) investigated patterns of mutation leading to fluconazole resistance among 21 clinical isolates of C. neoformans for which fluconazole MICs ranged from 0.25 to 4 µg/ml. They observed the growth pattern of the isolates on medium with 8 µg of fluconazole per ml and found that the growth rates of putative resistant mutants on the fluconazole plates were significantly different among the isolates. Furthermore, the MICs of fluconazole for these mutants differed significantly among the isolates as well as among replicates of the same isolate, with values ranging from 2- to 64-fold higher than those for the original isolates. Xu et al. concluded that the mutation leading to fluconazole resistance in C. neoformans in vitro is a dynamic and heterogeneous process and speculated that there exist multiple mechanisms for acquisition of drug resistance in this species (29). Interestingly, the MICs for the mutants developed by Xu et al. (29) were stable after subculture in drug-free medium, suggesting that the mechanisms of resistance may be different from that observed in the present study.
Detection of the heteroresistant phenotype in a clinical microbiology laboratory is difficult. Population analysis is not practical in the typical clinical laboratory, and a heteroresistant subpopulation might not be distinguishable from the trailing growth that is often observed with the reference broth microdilution method. From this standpoint, agar-based methods such as the E test and the disk diffusion test might have greater potential to detect the heteroresistant phenotype since the presence and size of the colonies within the zones of inhibition can be observed. The advantage of the E test in the detection of heteroresistance has been described in previous studies (15, 18). Although there were no distinct macrocolonies within the ellipse of the E test when we tested the five heteroresistant isolates, the observed ellipses were less distinct than those of fluconazole-susceptible isolates. Given the temperature-dependent characteristic of heteroresistance, conducting the E test at a lower temperature (30°C) might also enhance the detection of heteroresistant subpopulations.
In summary, we confirmed the existence of heteroresistant clones in a significant proportion (4.7%) of clinical isolates of C. neoformans. Notably, the degree of heteroresistance was strain dependent. The rapid selection of resistant phenotypes under exposure to fluconazole was also accomplished in vitro. Further studies are required to determine the clinical significance of fluconazole heteroresistance in C. neoformans and its role as a cause of clinical failure in fluconazole therapy. The development of appropriate methods to detect heteroresistant isolates and the elucidation of the molecular mechanisms of heteroresistance are also interesting areas for future investigation.
Present address: Department of Laboratory Medicine, Kinki University School of Medicine, Ohnohigashi, Osakasayama, Osaka, Japan 589-8511. ![]()
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