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Journal of Clinical Microbiology, June 2003, p. 2348-2357, Vol. 41, No. 6
0095-1137/03/$08.00+0 DOI: 10.1128/JCM.41.6.2348-2357.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Microbial Diseases Laboratory, Division of Communicable Disease Control, California Department of Health Services, Richmond, California 94804
Received 2 December 2002/ Returned for modification 4 February 2003/ Accepted 25 February 2003
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-3 subgroup of the class Proteobacteria (25, 31). These conclusions necessitated the removal of Aeromonas from the family Vibrionaceae and transfer to a new family, the Aeromonadaceae (8). Similarly, only five species of Aeromonas were recognized 15 years ago (21), three of which (A. hydrophila, A. sobria, and A. caviae) existed as phenospecies, that is, a named species containing multiple DNA groups, the members of which could not be distinguished from one another by simple biochemical characteristics. Subsequent systematic investigations have resulted in the number of valid published genomospecies rising to 14 (23), and it is anticipated that additional species will be described because rare strains have been identified that do not reside in any established Aeromonas species. The genus Aeromonas comprises important human pathogens causing primary and secondary septicemia in immunocompromised persons, serious wound infections in healthy individuals and in patients undergoing medicinal leech therapy, and a number of less well described illnesses such as peritonitis, meningitis, and infections of the eye, joints, and bones (18). Gastroenteritis, the most common clinical manifestation, remains controversial (18). While there are a number of well-described cases of Aeromonas-associated gastroenteritis in the literature, it still remains unproven whether most fecal isolates recovered from symptomatic persons are the etiologic agent responsible for the diarrheal syndrome. One theory to explain this contradiction is that only specific subsets of Aeromonas are pathogenic for humans and that biotyping schemes need to be developed to differentiate environmental from clinical strains (23).
One of the major difficulties in the identification of Aeromonas strains to species level concerns the current number of recognized taxa (n = 14) and the lack of clear-cut phenotypic tables useful in distinguishing each of these groups from the others (17). This problem has arisen because taxonomic studies often report only selected biochemical characteristics on newly described species and then compare these results to phenotypic data from previously published studies on genetically related taxa. Although the tests used may be the same in each study, the growth conditions, medium composition, inoculation procedure, and incubation conditions may vary considerably, potentially affecting results (12, 15).
In some instances, commercial systems have been used to generate the data, and it is not always clear how closely microidentification test results parallel results obtained by conventional methodology (2). Furthermore, many of the biochemical schemes currently used in clinical laboratories to identify aeromonads predate the description of newer taxa (1, 5, 7, 22). This fact calls into question whether previously selected biochemical tests used to identify older Aeromonas species are applicable to the identification of those described more recently. Finally, the diversity in testing methodologies has hampered the development of consistent phenotypic properties and typing schemes with which to identify most Aeromonas strains, if necessary, to species level in the clinical laboratory.
In this study we present cumulative biochemical data on almost 200 Aeromonas strains representing each of the 14 recognized species and propose possible schemes for their identification in the clinical laboratory (Table 1).
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TABLE 1. Type and reference cultures of Aeromonas strains used in this investigationa
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25%) from animals, fish, or environmental sources. The taxa included in these investigations were A. hydrophila, A bestiarum, A. salmonicida, A. caviae, A. media, A. eucrenophila, A sobria (sensu stricto), A. veronii (two biotypes), A. jandaei, A. schubertii, A. trota, A. encheleia, A. allosaccharophila, and A. popoffii. Included within these 193 strains were the type strains for 13 Aeromonas species and 37 reference strains received from national and international culture collections. The A. salmonicida type strain, ATCC 33658T (subspecies salmonicida), was not included in this study as it represents strains typically recovered from fish (salmonids) that grow at lower temperatures (20°C), produce a brownish pigment, and are nonmotile and indole negative. The A. salmonicida strains included in this study primarily originated from clinical material (feces) and from environmental samples (water). These strains were motile, grew well at 35°C, were indole positive, and did not produce melanin-like pigments; however, they did belong to hybridization group 3 (A. salmonicida) by DNA pairing studies. Of these 193 strains, 152 (79%) had previously been identified to species level by DNA binding. The remaining 41 strains fit the classic phenotypic definition for their respective taxa. All strains were maintained as working cultures in motility agar deeps at room temperature during the course of these investigations and were periodically transferred to retain viability. In addition to this initial group of 193 strains, we retrospectively reviewed biochemical data on another 235 isolates in our collection.
Biochemical tests. Aeromonas strains (n = 193) were tested for 63 phenotypic traits. These tests were performed in a conventional format as previously described, and appropriate positive and negative controls were included for each test and with each lot of prepared medium (1, 13, 19). Liquid medium or agar slants were inoculated from overnight tryptone broth cultures grown at 35°C or, in the case of A. popoffii and A. sobria CIP 7433 (sensu stricto), 25°C. Plates (e.g., to assay elastase) were inoculated from overnight growth on heart infusion agar slants. Biochemical or enzymatic tests performed by plate assays included DNase and elastase activities, elaboration of a ß-hemolysin, polypectate (pectinase) degradation, and expression of a stapholysin (1, 16).
Several new tests were added, including clearing of tyrosine-containing (0.5%) plates (tyrosinase), detection of alkylsulfatase activity (plate), and Jordan's tartrate (13, 20). Carbohydrate fermentation reactions were performed in extract broth (Acumedia Manufacturers, Inc., Baltimore, Md.) containing 1% (wt/vol) of the desired sugar and 1% (vol/vol) Andrade's indicator. All reagents (sugars and substrates) were obtained from Sigma (St. Louis, Mo.). Gas production from D-glucose fermentation was determined in carbohydrate fermentation broths containing Durham tubes. All tests were incubated at 35°C (polypectate and pigment, 25°C) with the exception of A. popoffii and A. sobria CIP 7433 (sensu stricto), which were incubated at 25°C because preliminary experiments had indicated that much better growth occurred at lower rather than higher temperatures.
Tests were read daily for 7 days with the following exceptions: tests for o-nitrophenyl-ß-D-galactopyranoside (ONPG) and susceptibility to O/129 (2,4-diamino-6,7-diisopropylpteridine, 150 µg), ampicillin (10 µg), and cephalothin (30 µg) were read at 1 day; tests for KCN, malonate, gluconate oxidation, pyrazinamidase, and Jordan's tartrate were read at 2 days; tests for DL-lactate and urocanic acid utilization and Voges-Proskauer were read at 3 days; and tests for urea hydrolysis, citrate utilization, ornithine and lysine decarboxylase, and arginine dihydrolase activity were read at 4 days. A subset of these strains (n = 27) were additionally evaluated for the ability to ferment rare or unusual sugars. Carbohydrates tested included ß-gentobiose, glucamine, glucose 1-phosphate, glucose 6-phosphate, inulin, lactulose, D-lyxose, maltotriose, palatinose, sedoheptulose, stachyose, D-tagatose, D-turanose, and xylitol. In addition, to determine the relative extent of phenotypic variation in the genus, the biochemical test results of 235 additional Aeromonas strains identified by the Microbial Diseases Laboratory were reviewed.
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Of the 62 biochemical characteristics evaluated for all 193 strains of Aeromonas, only 9 tests (15%) yielded uniform results. These reactions were the presence of cytochrome oxidase and nitrate reductase, fermentation of D-glucose and trehalose, failure to utilize mucate, and the inability to produce acid from D-arabitol, dulcitol, erythritol, and xylose. The remaining 53 tests that yielded variable results are listed in Table 2. The positive reactions listed in Table 2 were for 48 h (2 days). This endpoint was chosen because clinical laboratories rarely read biochemical test results on rapid growers for more than 48 h. Although all 193 Aeromonas strains were oxidase positive, several other tests useful in the differentiation of aeromonads from vibrios and plesiomonads gave variable results (Table 2).
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TABLE 2. Biochemical properties of Aeromonas species
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Most strains that fermented L-rhamnose belonged to A. bestiarum, A. encheleia, or A. allosaccharophila. Almost half of all A. jandaei strains fermented the disaccharide melibiose. Fermentation of D-sorbitol, previously linked to A. salmonicida (19), was almost exclusively associated with this species, as 85% of strains tested fermented this alcoholic sugar; only one other strain with similar abilities (A. caviae) was identified in this survey. The inability to ferment D-mannitol was primarily restricted to A. schubertii (14) and some strains of A. trota (6).
Fermentation of unusual carbohydrates. Because many Aeromonas species are difficult to identify with a limited number of biochemical characteristics, we explored whether the fermentation of unusual carbohydrates might be useful as an aid to species identification. Thirteen type strains and 37 reference strains of Aeromonas (Table 1) representing each of the 14 nomenspecies were used to screen for potentially useful characters. Eight carbohydrates yielded uniformly negative test results: ß-gentobiose, glucamine, inulin, D-lyxose, sedoheptulose, stachyose, D-tagatose, and xylitol. All 27 strains fermented maltotriose, although most isolates (>80%) required 96 h to produce acid from this carbohydrate. Palatinose was fermented by five of six strains of the A. hydrophila complex, by both A. popoffii strains tested, and by one A. veronii biogroup veronii isolate. Subsequently all A. popoffii strains were tested and found to be palatinose positive. Turanose fermentation was detected in only 5 of the 27 strains tested (19%) and then only after prolonged incubation (4 to 7 days). Three other sugars (lactulose, glucose 1-phosphate, and glucose 6-phosphate) yielded potentially discriminatory results (see A. caviae complex).
Atypical phenotypic properties. In addition to the data presented in Table 2, we retrospectively reviewed laboratory data on an additional 235 Aeromonas strains. These strains were identified to genomospecies level as A. hydrophila, A. caviae, A. veronii biogroup sobria, or Aeromonas sp. (could not be placed in a defined taxon based upon biochemical characteristics). Of the 12 characteristics listed in Table 3, five of these phenotypes were not detected in the original survey of 193 strains (Table 2). These tests include fermentation of D-arabitol and D-xylose, mucate utilization, and failure to produce cytochrome oxidase and acid from trehalose. The most common atypical biochemical characteristics observed included fermentation of L-rhamnose, D-sorbitol, and melibiose and urea hydrolysis. An oxidase-negative strain was recovered from the feces of a 16-day-old male infant with gastroenteritis in 1992. Because of the negative oxidase reaction, it was originally thought to be a possible Chromobacterium violaceum isolate. Subsequent biochemical testing in our laboratory identified this strain as an oxidase-negative A. caviae complex member (confirmed by the Centers for Disease Control).
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TABLE 3. Atypical phenotypic properties of the genus Aeromonas
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TABLE 4. Propeties of raffinose- and melibiose-positive Aeromonas strains
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FIG. 1. Use of Møeller decarboxylase and dihydrolase reactions as a screening tool for recognition of potential species giving the indicated reaction. *, only rare strains of these species display this pattern. Abbreviations: LDC, lysine decarboxylase; ODC, ornithine decarboxylase; ADH, arginine dihydrolase; V, variable.
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TABLE 5. Biochemical identification of Aeromonas to complex level
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TABLE 6. Tests useful in the separation of members of the A. hydrophila complex
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TABLE 7. Tests useful in the separation of members of the A. caviae complex
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A. sobria complex. In 1976, Popoff and Véron (28) identified what later turned out to be the A. sobria complex or phenospecies. The A. sobria complex was defined on the basis of a number of phenotypic traits, which included failure to hydrolyze esculin, failure to ferment (or utilize) L-arabinose and salicin, and failure to grow in KCN broth. With some minor exceptions (e.g., variable growth in KCN broth for some species), this complex is composed of the following nomenspecies: A veronii biogroup sobria (DNA hybridization group 8), A. jandaei, A. schubertii, and A. trota. The major phenotypic features useful in the separation of species within the A. sobria complex are listed in Table 8. Although A. veronii biogroup sobria and A. jandaei can only be distinguished from one another in Table 8 based upon sucrose fermentation, there are several other tests useful in separating these taxa. Two-thirds of A. jandaei strains are resistant to cephalothin, while all A. veronii biogroup sobria strains were susceptible or partially susceptible to this first-generation cephalosporin. Half of the A. veronii biogroup sobria strains were pyrazinamidase positive, and a third degraded L-tyrosine crystals; neither activity was associated with A. jandaei isolates. Also, most A. jandaei were citrate positive, while only half of A. veronii biogroup sobria strains utilized citrate. As previously mentioned, almost half (47%) of A. jandaei fermented melibiose, while only 1 of 25 A. veronii biovar sobria strains fermented this carbohydrate.
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TABLE 8. Tests useful in the separation of members of the A. sobria complex
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For less well-characterized species, the true extent of phenotypic variation remains unknown, although, as more strains of these uncommon genomospecies are identified, greater phenetic diversity is likely to be found. Such diversity can be seen in the recent case report describing the isolation of an A. media strain that is lysine decarboxylase positive from the sputum of a patient with chronic bronchitis (11). The bottom line to this phenotypic diversity is that it will become increasingly difficult to identify Aeromonas isolates to species level without extensive arrays of biochemical tests. Fortunately, approximately 85% of clinical isolates fall into one of three recognizable genomospecies, that is, A. hydrophila (sensu stricto, HG1), A. caviae (sensu stricto, HG4), and A. veronii biotype sobria (sensu stricto, HG8, often incorrectly referred to as A. sobria).
Although increasing phenotypic diversity within the genus is now being recorded, Aeromonas isolates can in most cases be identified to phenospecies or genomospecies with fairly straightforward biochemical schemes and selected biochemical characteristics (Tables 5 to 8). Some tests, previously used in a number of identification schemes, now seem to be less useful than previously thought due to the expanding number of species and the need to generate an identification within a reasonable period of time (48 h). These tests include growth in KCN broth, fermentation of salicin, and production of a ß-hemolysin. Growth in KCN, a test not commonly used by most clinical laboratories, appears less helpful now, since 60% of A. veronii biogroup sobria and A. jandaei strains grew in this broth. Likewise, fermentation of salicin has lost some of its discriminatory value, as 25% to 70% of members of the A. hydrophila complex fail to produce acid from this aglycone. Finally, the widespread emergence of beta-hemolytic A. caviae strains, one of the three most common species identified in the clinical laboratory, renders this trait of limited value in distinguishing A. caviae from A. hydrophila (sensu stricto) and A. veronii biovar sobria.
A 1996 Canadian study of 35 A. caviae strains of clinical origin found 6 (17%) to be beta-hemolytic on sheep blood agar plates (35). The hemolysin detected in that investigation appears to be unique to A. caviae. It may be that the increased incidence of hemolytic A. caviae strains is due to dissemination of clones bearing this hemolytic determinant or to horizontal transfer of hemolysin genes from other hemolytic Aeromonas species (e.g., A. hydrophila and A. veronii biotype sobria) to A. caviae. Whatever the reason, the incidence of beta-hemolytic A. caviae strains is on the rise and warrants attention, as it limits the use of this marker as an aid to species identification.
An interesting finding was the coexpression of rapid melibiose and raffinose fermentation by some strains of several Aeromonas species, excluding A. jandaei. This was an unexpected observation and suggests that these markers may be closely linked on the bacterial chromosome. Another possibility is that Mel+ Raf+ strains may be harbored on extrachromosomal elements that encode these metabolic activities. This hypothesis seems unlikely since most aeromonads do not routinely carry plasmids (only
25%), although it cannot be ruled out at present and will require further investigation. Similar to this observation was the initial presence of Ure+ A. caviae strains in California in the late 1980s and early 1990s. These strains seem to have mostly disappeared by the mid-1990s and were most often associated with diarrheal disease. Because the serotype could not be determined for several strains, it is possible that one or more clones carrying the Ure+ marker emerged during this period and subsequently declined in numbers. The reasons for this possible decline are unknown. However, in Yersinia enterocolitica, urease activity contributes to acid tolerance and may promote bacterial survival prior to infection (24). Thus, urease activity in select Aeromonas strains might provide a similar advantage.
The most important decision facing clinical laboratories is how far to proceed with the identification of Aeromonas species isolated from clinical material. For most moderate- to larger-sized hospitals or medical centers, it seems reasonable that isolates should be identified at least to phenospecies (Table 5). However, under a number of additional circumstances, medical facilities may want to proceed with definitive identifications. Some cases of gastroenteritis may fall into this category. Patients with hematologic malignancies may be more prone to gastrointestinal tract colonization with aeromonads than persons with other underlying conditions (32). Since the gastrointestinal tract is often the anatomic site from which bacteria disseminate to produce septicemia, and the pathogenic (invasive) potential of Aeromonas species varies, identifying isolates to species may be warranted in order to monitor such persons.
A second situation where species identification of strains may be justified is in reputed cases of chronic disease, such as gastroenteritis (29) or hepatobiliary disease (unpublished observations). In these instances, identifying Aeromonas isolates to species may resolve issues concerning whether a patient has chronic disease or has been reinfected by a different strain. Although no definitive outbreak involving Aeromonas has ever been described, there have been clusters of cases reported at long-term care (3) and day care (9) facilities where identification of strains to species was appropriate. Finally, isolates recovered from systemic infections such as blood should be good candidates for species identification, since it will help define the role of each genomospecies in serious clinical disease, thereby impacting prognosis and treatment. Potential useful tests for the identification of aeromonads by both clinical and reference microbiology laboratories under these circumstances are listed in Table 9.
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TABLE 9. Suggested and recommended tests useful in Aeromonas identification schemes
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