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Journal of Clinical Microbiology, September 2003, p. 4188-4193, Vol. 41, No. 9
0095-1137/03/$08.00+0 DOI: 10.1128/JCM.41.9.4188-4193.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Microbiology, Miami University, Oxford, Ohio
Received 14 May 2003/ Returned for modification 25 June 2003/ Accepted 3 July 2003
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A report from Yamamoto et al. (31) described the structure of acinetobactin, the siderophore secreted by A. baumannii 19606, the prototype strain of this opportunistic human pathogen. The acinetobactin siderophore structure is virtually identical to that of the anguibactin siderophore from V. anguillarum (20). These two siderophores vary in their amino acids linking DHBA to hydroxyhistamine, with acinetobactin using L-threonine instead of L-cysteine. In accordance with the structure of acinetobactin, A. baumannii 19606 is capable of producing histamine by decarboxylation of histidine (3), which is then most likely used for the biosynthesis of this siderophore in a pathway that may be similar to that described for anguibactin in V. anguillarum (11). The almost identical structures of acinetobactin and anguibactin predict that A. baumannii 19606 expresses an outer membrane protein related to FatA, which is the anguibactin receptor produced by V. anguillarum. This prediction was confirmed by immunoblot analysis of A. baumannii 19606 outer membrane proteins with anti-FatA serum (12).
A previous report characterized a high-affinity iron uptake system expressed by A. baumannii 8399, which was isolated during a nosocomial outbreak of respiratory infections at the Oregon Health Sciences University Hospital, Portland (14). This iron uptake system includes a catechol siderophore capable of scavenging iron from high-affinity iron-binding proteins present in the human host. Chemical analyses of a secreted catechol siderophore (14) and the absence of histamine in culture supernatants (3) indicate that the siderophore produced by this isolate is different from acinetobactin. This hypothesis is supported by the recent observation that a chromosomal region of this strain contains a gene cluster that includes a gene encoding a putative outer membrane siderophore receptor protein unrelated to the V. anguillarum and A. baumannii 19606 FatA and FatA-like proteins, respectively (13).
Knowing that there is a difference in siderophore-mediated iron uptake systems between the A. baumannii 19606 and 8399 strains, we decided to compare some components potentially involved in iron acquisition expressed by different clinical A. baumannii isolates obtained from an outbreak at the Oregon Health Sciences University and different European geographical regions. Electrophoretic and immunoblot analyses and thin-layer chromatography (TLC) showed that members of this bacterial species express different iron acquisition systems that allow them to prosper under iron-limiting conditions.
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Detection of siderophore activity and catechol compounds produced under iron-rich and iron-limiting conditions. Bacterial cells were cultured in M9 minimal medium (22) supplemented with either 100 µM FeCl3 (iron rich) or 100 µM ethylenediamine-di-(o-hydroxyphenyl) acetic acid (EDDHA; iron limiting). Production of extracellular compounds with siderophore activity was tested with the chrome azurol S reagent (28). The presence of phenolic (catechol) compounds was detected with the Arnow test (6). Purified anguibactin, acinetobactin, and DHBA obtained from a commercial source (Sigma) were used as standards in chemical and biological assays.
General DNA techniques. Total DNA was isolated either by using ultracentrifugation in CsCl density gradients (21, 27) or by using the DNeasy tissue kit from Qiagen. Plasmid DNA was isolated according to the method of Birnboim and Doly (9) and further purified by using ultracentrifugation in CsCl-ethidium bromide density gradients (27) or by using the Qiagen mini plasmid spin columns. DNA was digested with restriction enzymes as indicated by the manufacturer (New England Biolabs) and size fractionated by agarose gel electrophoresis (27). Specific restriction fragments were detected by Southern blot analyses which were conducted by using standard protocols (27) under high-stringency conditions (17). The probes to detect the om73 and fatA-like genes were generated by labeling pMU77 and a 750-bp internal fragment of the fatA-like gene (12) that was generated by PCR, respectively. The 32P-labeled probes were prepared by using the oligolabeling method (16), and the radioactive bands were detected with a Storm 860 scanner (Molecular Dynamics).
Isolation and electrophoretic analysis of total and outer membrane proteins. Bacterial cells used to prepare total and outer membrane fractions were collected, after overnight culture in M9 minimal medium under iron-limiting and iron-rich conditions, by centrifugation and washed once with Tris-buffered saline solution (10 mM Tris-HCl, 0.15 M NaCl [pH 7.5]). Outer membranes were isolated by selective solubilization of total membranes with 1.5% N-lauroylsarcosine (Sarkosyl) and high-speed centrifugation as previously described (2). Outer membrane proteins of all strains were size fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) by using large (14.5-by-15-cm) 12.5% polyacrylamide gels (2). Proteins were visualized by staining with Coomassie brilliant blue. Protein concentration was determined with the Bradford method (10), and 25 µg of proteins was loaded in each lane of polyacrylamide gels.
Detection of the OM73 and FatA-like proteins by immunoblot analyses. Total and outer membrane proteins were size fractionated by SDS-PAGE on 12.5% polyacrylamide gels and blotted onto nitrocellulose (2). The presence of OM73 was tested with a rabbit polyclonal antiserum raised as previously described (13). The anti-FatA-like serum was prepared by using the protein isolated from A. baumannii 19606 by SDS-PAGE and electroelution as previously described (15). Specific antibodies were immunopurified with nitrocellulose strips containing the cognate antigen band as previously described (25). The presence of immunocomplexes was detected with horseradish peroxidase-labeled protein A and the SuperSignal CL-HRP substrate (Pierce Chemical).
Detection of histamine by TLC. The presence of histamine in culture supernatants was analyzed by TLC as previously described (7). Briefly, A. baumannii strains were grown overnight in M9 minimal medium supplemented with 1% histidine. Cells were removed by centrifugation, and the culture supernatants were lyophilized and methanol extracted. Samples were spotted onto silica gel TLC plates and developed with a mobile phase of methanol-ammonium hydroxide (20:1). Ninhydrin reagent was used to visualize histidine and/or histamine.
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Comparative analysis of outer membrane proteins. (i) Oregon isolates. Electrophoretic analysis of outer membrane proteins obtained from the strains isolated during the Oregon Health Sciences University outbreak and cultured under iron limitation showed that these strains can be classified into four groups based on their protein profiles. Group 1 includes the isolates 9235, 8143, 8114, 7133, 8399, and 9124 (Fig. 1A, lanes 2, 4, 5, 7, 9, and 12, respectively), with similar patterns that differ mainly in the presence or absence of relatively large-molecular-size proteins. Group 2 consists of strains 8971, 7138, and 9397 (Fig. 1A, lanes 3, 8, and 13, respectively). The most apparent difference between these two groups is the distinct presence of ca. 30- and 37-kDa proteins in the group 1 and group 2 strains, respectively. The strains 9606 and 7931 (Fig. 1A, lanes 10 and 11, respectively), which are the members of group 3, display protein profiles that are remarkably different from those of group 1 and 2. The strain 8637 (Fig. 1A, lane 6), which is considered the only representative of group 4, displays a pattern that is closer to a combination of the patterns of group 1 and 2 based on the presence of proteins with mobilities corresponding to 30 and 37 kDa. However, this strain displays differences that are apparent when its protein pattern is compared with those shown by members of the first two groups.
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FIG. 1. SDS-PAGE analysis of outer membrane proteins produced by A. baumannii clinical isolates. (A) Oregon strains. Lanes: 2, 9235; 3, 8971; 4, 8143; 5, 8114; 6, 8637; 7, 7133; 8, 7138; 9, 8399; 10, 9606; 11, 7931; 12, 9124; and 13, 9397. (B) European strains. Lanes: 2, BM4420; 3, BM4421; 4, BM4422; 5, BM4424; 6, BM4427; 7, BM4430; 8, BM4432; 9, BM4436; 10, BM4439; and 11, 19606. Lanes 1 in both panels, molecular weight markers. Membrane fractions used for this analysis were isolated from cells cultured under iron-deficient conditions.
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FIG. 2. Detection of protein expression by Western blot analysis. (A) Detection of OM73 in the Oregon strains. Lanes: 1, 19606; 2, 9235; 3, 8971; 4, 8143; 5, 8114; 6; 8637; 7, 7133; 8, 7138; 9, 9606; 10, 7931; 11, 9124; 12, 9397; and 13, 8399. (B) Detection of FatA-like protein in the European isolates. Lanes: 1, 19606; 2, BM4439; 3, BM4436; 4, BM4432; 5, BM4430; 6, BM4427; 7, BM4424; 8, BM4422; 9, BM4421; and 10, BM4420.
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Taken together, the results described in this section show that the Oregon isolates tend to display protein profiles that are more related to one another than to those shown by the European strains isolated from different geographical regions. A similar conclusion is obtained when the European isolates are compared among themselves and with those obtained from the Oregon outbreak strains.
Presence of om73 and fatA-like genes. Southern blot analysis of total DNA isolated from each strain was done to test whether the lack of production of either OM73 or the FatA-like protein is due to the absence of the cognate genes, potential mutations, or negative regulatory mechanisms that may impair their expression. Figure 3A shows that with the exception of strain 8637 (lane 11), all the Oregon isolates (lanes 3, 5 to 10, and 12 to 15) contain a 1.2-kb HindIII fragment that hybridizes with the om73 radiolabeled probe. The multiple bands shown in lane 13 are most likely the result of partial digestion of the total DNA isolated from strain 8143. In contrast, 19606 and none of the European isolates produced a detectable signal with this probe (Fig. 3A, lanes 4 and 16 to 24). These results prove that there is a perfect correlation between the production of OM73 and the presence of the gene encoding this protein, which has all the attributes assigned to well-characterized bacterial siderophore receptors (12).
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FIG. 3. Southern blot analysis of total DNA obtained from the A. baumannii clinical strains. (A) Detection of om73 in HindIII-digested DNA isolated from the Oregon (lanes 3 and 5 to 15) and European (lanes 16 to 24) isolates. Lanes: 3, 8399; 4, 19606; 5, 9397; 6, 9124; 7, 7931; 8, 9606; 9, 7138; 10, 7133; 11, 8637; 12, 8114; 13, 8143; 14, 8971; 15, 9235; 16, BM4439; 17, BM4436; 18, BM4432; 19, BM4430; 20, BM4427; 21, BM4424; 22, BM4422; 23, BM4421; and 24, BM4420. (B) Detection of fatA-like gene in EcoRV-digested DNA isolated from the Oregon (lanes 4 to 15) and European (lanes 16 to 24) isolates. Lanes: 3, 19606; 4, 9397; 5, 9124; 6, 7931; 7, 9606; 8, 8399; 9, 7138; 10, 7133; 11, 8637; 12, 8114; 13, 8143; 14, 8971; 15, 9235; 16, BM4439; 17, BM4436; 18, BM4432; 19, BM4430; 20, BM4427; 21, BM4424; 22, BM4422; 23, BM4421; and 24, BM4420. Lanes 1, HindIII-digested DNA; lanes 2, empty.
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Detection of histamine production. The presence of hydroxyhistamine in the acinetobactin molecule (31) suggests that A. baumannii 19606 expresses histidine decarboxylase activity as described for V. anguillarum (7, 29). This enzymatic activity is encoded in V. anguillarum by angH, and histamine proved to be an essential precursor in the biosynthesis of anguibactin (29). Furthermore, this amine was shown to be secreted into the milieu together with anguibactin (7). Previous work in our lab has shown that A. baumannii 19606 is capable of converting histidine into histamine but that A. baumannii 8399 does not synthesize histamine (3). Based on this information, we tested all European and Oregon isolates for their ability to produce histamine. TLC analysis of methanol extracts of culture supernatants of cells incubated in the presence of 1% histidine showed that none of the Oregon strains secreted detectable amounts of histamine. This observation is in perfect correlation with the results obtained by the SDS-PAGE and immunoblot analyses described above (Table 1). Furthermore, it provides additional support to the hypothesis that these strains acquire iron via a catechol siderophore system that is different from that expressed by V. anguillarum and A. baumannii 19606.
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TABLE 1. Histamine secretion and production of the FatA-like and OM73 proteins in A. baumannii clinical isolates
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Conclusions. Our data demonstrate that there are significant variations in the expression of elements involved in iron acquisition among different A. baumannii nosocomial isolates, even within strains obtained during a particular outbreak of nosocomial infections. The variation in the production of a FatA-like protein and the expression of histidine decarboxylase with the concomitant production of histamine are of particular interest. These elements, which are most likely involved in the biosynthesis and utilization of acinetobactin, may play the same function as those described in the biosynthesis of anguibactin and transport of ferric anguibactin in the fish pathogen V. anguillarum. We have recently observed that the disruption of the A. baumannii 19606 fatA-like gene indeed impairs the iron acquisition phenotype of this strain, confirming its role in iron transport (12). The finding of almost identical iron acquisition elements in a human pathogen and a fish pathogen, which are taxonomically and biochemically different from each other, was unexpected and unpredictable. On the other hand, this finding may indicate that the genetic elements encoding the anguibactin- and acinetobactin-mediated systems are mobile and can be transferred among unrelated pathogens. This hypothesis is supported by the fact that the anguibactin-mediated system is mostly encoded by genes located in the plasmid pJM1 present in virulent strains of V. anguillarum (11). Furthermore, the pJM1 genes, particularly those encoding transport functions, are confined to pJM1 regions that contain genes like those encoding transposases and are surrounded by repeated sequences (30). This genetic arrangement, which resembles that of transposable elements, may explain the presence of similar iron uptake systems in unrelated pathogens. The possibility of the acquisition of the acinetobactin transport system via lateral gene transfer is also supported by the observation that the fatA-like gene can be located in different genomic regions in different A. baumannii isolates.
The fact that some of the European isolates produce histamine but not the FatA-like protein, and vice versa, may reflect either some instability of the genetic elements encoding these iron acquisition components or remnants of genetic processes that were not resolved properly. Another possibility that should be considered, particularly in the situation in which histamine is produced in the absence of detectable FatA-like protein, is that some of these elements like histamine may be used for the biosynthesis of siderophores structurally different from acinetobactin and anguibactin. The data also demonstrate that some isolates, independent of their origin, must express iron acquisition systems unrelated to those mediated by acinetobactin and anguibactin, and even different from that expressed by most of the Oregon isolates, which involve a novel iron chelator and may require the expression of the OM73 outer membrane protein.
All the data together demonstrate the complexity and variability of the iron uptake systems expressed by this opportunistic human pathogen. However, all these variations in the production of iron acquisition elements, either within members of a particular set of isolates related by their nosocomial origin or among strains classified by their geographical origins, may be an accurate reflection of the taxonomic and metabolic variability already described for this bacterial group. They may also reflect the ubiquitous nature of Acinetobacter and its ability to survive under significantly different environmental conditions.
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