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Journal of Clinical Microbiology, October 2004, p. 4449-4452, Vol. 42, No. 10
0095-1137/04/$08.00+0 DOI: 10.1128/JCM.42.10.4449-4452.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Serotypes and Sequence Types of Pneumococci Causing Invasive Disease in Scotland Prior to the Introduction of Pneumococcal Conjugate Polysaccharide Vaccines
S. C. Clarke,1,2* K. J. Scott,1 and S. M. McChlery1
Scottish Meningococcus and Pneumococcus Reference Laboratory,1
Division of Infection and Immunity, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow, United Kingdom2
Received 6 January 2004/
Returned for modification 25 February 2004/
Accepted 18 July 2004

ABSTRACT
Pneumococcal conjugate polysaccharide (Pnc) vaccines are now
available, and the need for an improved understanding of circulating
pneumococcal serotypes and sequence types (STs) is recognized.
Three hundred sixty-eight pneumococci isolated in cases of invasive
disease in Scotland in the first 6 months of 2003 were analyzed.
The isolates belonged to 30 serotypes, and there was a strong
correlation between serotype and ST, although only nine serotypes
consisted of a single ST. The following serotypes coexisted
with the following numbers of STs: serotype 14, 10 STs, serotype
8, 8 STs; serotype 4, 6 STs; serotype 22F, 8 STs; serotype 9V,
7 STs; serotype 23F, 6 STs; serotype 6B, 6 STs; serotype 1,
3 STs; serotype 3, 3 STs; and serotype 7F, 3 STs. Our data also
showed a strong association between ST and serotype, although
19 STs contained multiple serotypes. Of the 10 most common STs,
6 coexisted with a single serotype each. Vaccine coverage in
all age groups was 94.9% for the 23-valent polysaccharide vaccine
and 50.7, 55.4, and 64.1% for the 7-, 9-, and 11-valent Pnc
vaccines, respectively. For those under the age of 2 years,
79% coverage would be provided by the 7-, 9-, and 11-valent
Pnc vaccines.

INTRODUCTION
Streptococcus pneumoniae (the pneumococcus) is responsible for
diseases such as pneumonia, bacteremia, and meningitis. It remains
a leading cause of morbidity and mortality worldwide, especially
in the young and the old (
16,
17). More than 90 pneumococcal
serotypes are known, although the majority of invasive and noninvasive
disease is associated with a much smaller number of serotypes.
A 23-valent pneumococcal polysaccharide vaccine has been available
for some time, but this vaccine is not useful for those under
the age of 2 years, because this age group is unable to elicit
a T-cell-dependent immune response against pneumocococcal capsular
polysaccharide. A heptavalent pneumococcal conjugate polysaccharide
(Pnc) vaccine has been developed and is now licensed in a number
of countries, including Scotland (
3,
5,
19). It has been used
in the United States since 2000 (
2) but has not yet been introduced
into the childhood immunization schedule in Scotland. Obtaining
accurate epidemiological information is therefore important
and is even more necessary in the era of new conjugate vaccines.
Some epidemiological information relating to pneumococcal infection
in Scotland is available (
14,
15), but surveillance was enhanced
in 1999, although molecular tools were not used immediately
(
13). Discriminating between different serotypes of pneumococci
provides limited information on individual clones causing invasive
pneumococcal disease (IPD), because a single serotype can include
a number of genetically divergent clones due to horizontal transfer
of the capsular genes into new lineages (
1). Therefore, from
2003, multilocus sequence typing (MLST) was used to characterize
S. pneumoniae strains causing IPD in order to gain a better
understanding of the relationship between different serotypes
causing disease.
MLST data from Scotland can be compared with similar data from around the world via the MLST website, because it is an unambiguous nucleotide sequence-based typing method. MLST provides molecular typing data that are highly discriminatory and electronically portable between laboratories, and it has been adapted for S. pneumoniae (7, 8, 11). Here we present early data from the use of MLST for characterizing invasive pneumococci in Scotland before the introduction of Pnc vaccines.

MATERIALS AND METHODS
Invasive pneumococci received between January and June 2003
from the Scottish enhanced pneumococcal surveillance program
were used. These isolates are sent to the Scottish Meningococcus
and Pneumococcus Reference Laboratory (SMPRL) from diagnostic
laboratories throughout Scotland. Serotyping was performed by
coagglutination (
20) using antisera from the Staten Serum Institut,
Copenhagen, Denmark. MLST was performed, and data were analyzed,
as described previously (
11). Briefly, internal fragment of
seven housekeeping genes
aroE,
gdh,
gki,
recP,
spi,
xpt,
and
ddlwere sequenced by using an automated protocol
with a Roboseq 4200 (MWG Biotech UK Ltd., Milton Keynes, United
Kingdom) and a MegaBACE DNA sequencer (Amersham Biosciences,
Little Chalfont, Buckinghamshire, United Kingdom). Alleles were
assigned by comparing nucleotide sequence data at a particular
locus to all known alleles at that locus (
6). Sequence types
(STs) were assigned according to the combination of the seven
alleles with reference to the
S. pneumoniae MLST database (
www.mlst.net).
Data for the odds ratio (OR) of carriage versus disease were
obtained from the work of Brueggeman et al. (
1).

RESULTS
Serotypes and STs of invasive pneumococci.
Approximately 600 cases of IPD are reported in Scotland each
year, resulting in an incidence of approximately 12 cases per
100,000 individuals. Between January and June 2003, 368 invasive
isolates of
S. pneumoniae were received by the SMPRL. All isolates
were subjected to serotyping and MLST. Three hundred fifty-nine
isolates were isolated from blood, and nine were isolated from
cerebrospinal fluid. The isolates belonged to 30 serotypes,
of which serotype 14 was the most common (Table
1). One isolate
was nontypeable and was excluded from further analysis. There
were 97 different STs represented in the data set. During the
study period, 42 new STs were identified due to the occurrence
of new allelic profiles. In addition, one new allele was identified,
leading to the description of a new ST. As expected, there was
a strong correlation between serotype and ST (Tables
1 and
2).
Eight serotypes, namely, 11A, 15B, 16F, 17F, 24, 35F, 37, and
38, each consisted of a single ST. However, these accounted
for only 17 isolates. The remaining serotypes coexisted with
multiple STs. The 10 most common serotypes coexisted with the
following numbers of STs: serotype 14, 10 STs; serotype 8, 8
STs; serotype 4, 6 STs; serotype 22F, 8 STs; serotype 9V, 7
STs; serotype 23F, 6 STs; serotype 6B, 6 STs; serotype 1, 3
STs; serotype 3, 3 STs; and serotype 7F, 3 STs.
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TABLE 1. Association of serotype with ST among 367 invasive pneumococci isolated in Scotland, January to June 2003
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TABLE 2. STs containing multiple serotypes among the 368 invasive pneumococci isolated in Scotland, January to June 2003
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Association of serotype and ST with disease potential and capsule switching.
Pneumococci exist as commensal bacteria in many individuals
and do not proceed to cause disease. Pneumococci differ in their
rates of carriage and disease potential such that some strains
are carried frequently but do not commonly cause IPD whereas
other strains are not carried frequently but do commonly cause
IPD. Pneumococci are also highly competent and able to exchange
DNA with other pneumococci as well as other bacterial species.
In this study, we therefore wished to ascertain the incidence
of serotypes possessing multiple STs and hence the possibility
of capsule switching. We also wished to ascertain the importance
of this in relation to the OR of carriage versus disease. It
has been reported previously that pneumococci show a strong
relationship between ST and serotype (
1,
8), and our data also
showed a strong association, although 19 STs contained multiple
serotypes (Table
2). The existence of STs as multiple serotypes
may influence the outcome of circulating serotypes after the
introduction of a Pnc program. Interestingly, though, only 5
of the 19 STs with multiple serotypes were common in this study
(STs 9, 124, 162, 191, and 218), and they represented a total
of only 10 serotypes. Moreover, five of these serotypes are
covered by the heptavalent Pnc vaccine.
Of the 10 most common STs, 6 (STs 53, 176, 180, 246, 311, and 433) existed as single serotypes (serotypes 8, 6B, 3, 4, 23F, and 22F, respectively). The ORs for these are low, except for serotype 4, indicating that they have a decreased potential for causing invasive disease. ST9 was most common (11.5%), because it was one of the major STs within serotype 14 (Table 3). Serotype 14 has a reported OR of 8.8, which indicates increased invasive disease potential, and coexisted with STs 9, 100, 124, 156, 162, 234, 409, 835, 869, and 1108. ST9 also coexisted in one isolate each with serotypes 8 and 19A, with ORs of 0.9 and 1.1, respectively. ST53 was also common (8.5%) and is associated with serotype 8, which is also common in Scotland.
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TABLE 3. Association of the 10 most common STs with serotype among 367 invasive pneumococci isolated in Scotland, January to June 2003
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Polysaccharide and polysaccharide conjugate vaccine coverage.
The 23-valent polysaccharide has been available for many years
and, in the United Kingdom and other countries, is given to
individuals who are at increased risk of IPD. This vaccine is
efficacious for individuals above the age of 2 years. In this
study, 341 (94.9%) isolates were covered by the 23-valent polysaccharide
vaccine. However, plain polysaccharide vaccines do not induce
long-term immunological memory in individuals below the age
of 2 years. A heptavalent Pnc vaccine is now licensed in a number
of countries, including the United Kingdom, and is included
in the childhood immunization programs in the United States
and Finland. Further, 9- and 11-valent Pnc vaccines are undergoing
clinical studies. In this study, we determined the coverage
given by the 7-, 9-, and 11-valent Pnc vaccines. Overall, 182
(50.7%), 199 (55.4%) and 230 (64.1%) isolates, respectively,
would be covered by each vaccine. Serotype 14 was, as expected,
the serotype with the most coverage in all vaccines. There were
24 isolates from individuals under the age of 2 years, for which
79% coverage would be provided by the 7-, 9-, and 11-valent
Pnc vaccines.

DISCUSSION
IPD remains an important cause of morbidity and mortality in
Scotland and elsewhere. The aim of this work was to provide
an improved understanding of the pneumococci causing invasive
infection circulating in Scotland. Serotyping and nucleotide
sequence-based typing are required prior to and during the introduction
of pneumococcal conjugate polysaccharide vaccines, and by characterizing
large numbers of disease-causing pneumococci, we can identify
the actual incidence of pneumococcal serotypes and determine
their relationship by MLST. Here we have reported early data
from the first 6 months of genotyping of invasive pneumococci.
The majority of the isolates in this study originated from blood; this is probably because cerebrospinal fluid samples are not frequently taken in the United Kingdom and because duplicate isolates from the same patient are not received by the reference laboratory. Therefore, the study collection represents isolates from invasive disease without any known bias toward septicemia and/or meningitis. We have shown that serotypes 14 and 8 are the most common serotypes causing IPD in Scotland, and the MLST data indicate that major clones are associated with these serotypes. In a previous Scottish study (13), serotype 14 was again the most common serotype causing IPD, but serotype 8 was ranked sixth, accounting for only 6.6% of all serotypes.
The pneumococcal MLST database continues to expand. It has grown from 667 known STs in November 2002 (10) to 1,343 known STs as of June 2004. This is exemplified by the description of 42 new STs during this study. There was a strong correlation between serotype and ST, and vice versa, although 19 STs contained multiple serotypes. Our data partly agree with other studies where examples of multiple serotypes within the same ST have been primarily limited to serogroups 6, 9, 14, 19, and 23 (10).
A heptavalent Pnc vaccine is licensed, and others are undergoing clinical trials (4, 9, 19, 23, 24). Pnc vaccines provide good protection against invasive pneumococcal infection as well as reducing nasopharyngeal carriage of pneumococcal serotypes contained within the respective vaccine (4, 9, 12, 18). In the United States, the introduction of the heptavalent Pnc vaccine has resulted in a decline in IPD, particularly in individuals below the age of 2 years (22). In the present study, new Pnc vaccines provided 50.7 to 64.1% coverage for all age groups, a level of coverage lower than those previously reported in Scotland (14). However, this may be due to the improved surveillance which has taken place since 2001, which represents a true picture of circulating serotypes (13). Nevertheless, the possibility exists that nonvaccine serotypes may replace those represented in new Pnc vaccines through serotype or niche replacement (21), although the relative importance of such replacement in invasive disease and otitis media is not known. Moreover, it is not known whether different serotypes within the same ST will cause the same amount of invasive disease. In the present study, serotypes causing invasive pneumococcal infection in Scotland are well covered by new Pnc vaccines. However, since 19 STs possessed multiple serotypes, it was of interest to ask whether these would be covered by new Pnc vaccines. Of most interest was serotype 14, which is reported as having an increased invasive disease potential (1). This serotype consisted of 10 different STs, which, importantly, can also coexist with other serotypes. However, only STs 9, 124, 162, 191, and 218 were associated with a large number of isolates; among these, five serotypes were represented in the heptavalent Pnc vaccine. Therefore, the problem of capsule replacement is potentially minor as long as the number of serotypes contained within the same ST does not increase. Moreover, many of the possible replacement serotypes show a lower OR than the dominant serotype.
Of major importance is the fact that serotype 14 is included in the 7-, 9-, and 11-valent Pnc vaccines but serotype 8 is not. Serotype 8 is the second most common serotype causing invasive pneumococcal infection in Scotland. A recent study, however, found that serotype 8 was not commonly carried and did not commonly cause invasive disease; therefore, it has an OR of 0.9, which means that it has neither an increased nor a decreased invasive disease potential (1). Interestingly, serotype 8 was not reported from another study, in the United States, in which 1,168 pneumococci from sterile sites were characterized prior to the introduction of the heptavalent Pnc vaccine (10). Our data contradict both studies in finding that serotype 8 caused 38 cases of IPD, accounting for 10.3% of all disease. ST9, the major ST of serotype 14, also exists as serotype 8, so if all ST9 pneumococcal capsules switched to serotype 8, the incidence of serotype 8 IPD could potentially more than double and not be covered by Pnc vaccines. However, the actual possibility of this happening is not known.
The data presented here provide interesting insights into the circulating serotypes and STs. MLST was used to characterize S. pneumoniae strains causing IPD in order to gain a better understanding of the relationship between different serotypes causing disease. Importantly, these data can be compared with similar data from around the world via the MLST website. Ongoing serotype and MLST analysis in Scotland and other countries will provide important data prior to, during, and after the introduction of new Pnc vaccines. Such data are essential for informing vaccine policy and furthering our understanding of pneumococcal population genetics.

ACKNOWLEDGMENTS
This publication made use of the Multi Locus Sequence Typing
website (
http://www.mlst.net), developed by Man-Suen Chan and
David Aanensen and funded by the Wellcome Trust. Funding for
the robot liquid handling systems and DNA sequencers was provided
by the Meningitis Association of Scotland (Glasgow, United Kingdom)
and the National Services Division of the Scottish Executive.
We are grateful to Angela Brueggemann for assigning new alleles and STs. All staff of the SMPRL are acknowledged for performing serotyping and MLST.

FOOTNOTES
* Corresponding author. Mailing address: Scottish Meningococcus and Pneumococcus Reference Laboratory, Stobhill Hospital, Department of Microbiology, Balornock Road, Glasgow G21 3UW, United Kingdom. Phone: 44 141 201 3836. Fax: 44 141 201 3663. E-mail:
stuartcclarke{at}hotmail.com.


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Journal of Clinical Microbiology, October 2004, p. 4449-4452, Vol. 42, No. 10
0095-1137/04/$08.00+0 DOI: 10.1128/JCM.42.10.4449-4452.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
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