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Journal of Clinical Microbiology, August 2004, p. 3441-3448, Vol. 42, No. 8
0095-1137/04/$08.00+0 DOI: 10.1128/JCM.42.8.3441-3448.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
High-Resolution Genotyping of Campylobacter upsaliensis Strains Originating from Three Continents
P. Lentzsch,1 B. Rieksneuwöhner,2 L. H. Wieler,2 H. Hotzel,3 and I. Moser3*
Centre for Agricultural Landscape and Land Use Research, Müncheberg,1
Institute of Microbiology and Animal Epidemic Diseases, Free University, Berlin,2
Federal Research Centre for Virus Diseases of Animals, Institute of Bacterial Infections and Zoonoses, Jena, Germany3
Received 9 January 2004/
Returned for modification 5 March 2004/
Accepted 4 May 2004

ABSTRACT
Ninety-six
Campylobacter upsaliensis strains that originated
from Australia, Canada, and Europe (Germany) and that were isolated
from humans, dogs, and cats were serotyped for their heat-stable
surface antigens. All of them were genotyped by enterobacterial
repetitive intergenic consensus sequence PCR (ERIC-PCR) profiling,
and 83 strains were genotyped by macrorestriction analysis with
the endonuclease XhoI. Eighty-four percent of the strains belonged
to five different serotypes (serotypes OI, OII, OIII, OIV, and
OVI), with the proportions of strains in each serotype being
comparable among the groups of strains from all three continents.
Two serotypes, OIII and OIV, were prevalent at rates of 35 to
40%. Serotypes OI, OII, and OVI were detected at rates of 1.5
to 15%. Between 10 and 17.7% of the strains did not react with
the available antisera. Analysis of the ERIC-PCR profiles revealed
two distinct genotypic clusters, which represented the German
and the non-European strains, respectively. XhoI macrorestriction
yielded two genotypic clusters; one of them contained 80.2%
of the German strains and 34.6% of the non-European strains,
and the second cluster consisted of 65.4% of the non-European
strains and 19.8% of the German strains. Fourteen strains from
all three continents were analyzed for their 16S rRNA gene sequences.
Only two minor variations were detected in four of the strains.
In conclusion,
C. upsaliensis has undergone diverging processes
of genome arrangement on different continents during evolution
without segregating into different subspecies.

INTRODUCTION
Campylobacter upsaliensis, a catalase-negative or weakly catalase
positive thermotolerant
Campylobacter species, was first isolated
in 1983 from fecal samples of healthy and diarrheic dogs in
Sweden (
53). A few years later, in 1989, this microorganism
was identified in cats (
10). Several reports concerning the
carriage rates in dogs and cats and the risk that humans can
acquire infections from pet animals have been published (
2,
5,
6,
15,
18,
33,
34,
39). Cases of clinical disease in humans
caused by infections with
C. upsaliensis have been reported
from different areas of the world.
C. upsaliensis was isolated
from patients with abortion (
17), bacteremia (
19,
29,
44), an
abscess (
11), gastroenteritis (
12,
13,
14,
26,
29,
30,
44,
48,
56; W. M. Johnson, D. L. Woodward, R. Khakhria, and L. J. Price,
Campylobacter,
Helicobacter and Related Organisms, Proc. 9th
Int. Workshop, abstr., p. 27, 1998), hemolytic-uremic syndrome
(
7), and hypogammaglobulinemia (
8) and opportunistic infections
in immunocompromised hosts (
25,
44). However, in contrast to
C. jejuni (
46), knowledge about the genomic characteristics
of
C. upsaliensis is limited, and its possible pathogenic capacity
for humans and small animals is far from being well defined
(
4).
Genotypic methods have successfully been applied to accomplish phenotypic approaches to the subtyping of Campylobacter species (32, 45, 49, 54, 63). Previous reports of studies that used pulsed-field gel electrophoresis (PFGE) to characterize C. jejuni (21, 42, 65), C. upsaliensis (3, 34, 44), and C. hyointestinalis (52) at the genomic level demonstrated the usefulness of this method for epidemiological studies. Flagellin gene polymorphism (20, 37, 38) or the combination of macrorestriction analysis and serotyping based on heat-stable or heat-labile antigens have also been performed to distinguish C. jejuni strains from C. coli strains (43, 47, 54). Investigations of the genotypic and serological diversity of canine and feline C. upsaliensis strains originating from two different areas in Germany were previously performed in our laboratories. Human isolates were not available, since C. upsaliensis does not seem to be of major relevance as a human pathogen in Germany. Macrorestriction analysis as well as enterobacterial repetitive intergenic consensus sequence (ERIC) PCR (ERIC-PCR) profiling was used, and a serotyping scheme for heat-stable antigens was developed (34). In general, the study revealed a high degree of genomic diversity but a low degree of serological diversity. The genotypic clusters of the strains did not reflect their geographic origins in Germany or the health status of the carriers. As the vast majority of strains were isolated from dogs and only very few strains were isolated from cats and none was isolated from humans, host-specific differences could not be addressed in this investigation. In the present study C. upsaliensis strains isolated from humans, dogs, and cats in Canada and Australia were genotyped by the same methods described before (34) and compared with the German strains.
The aim of this study was to extend the knowledge of genomic characteristics of C. upsaliensis strains originating from different hosts and different areas of the world.

MATERIALS AND METHODS
Collection and cultivation of bacteria.
Seventy
C. upsaliensis strains were recovered from dogs (
n =
63) and cats (
n = 7) of different ages and enteric health conditions
in two regions of Germany (Berlin and Northrhine-Westfalia)
approximately 400 km apart. The isolates were collected from
rectal swab specimens obtained by using Culturettes (Becton
Dickinson). The isolates were transferred onto selective growth
media within 24 h after collection. Three selective media, CAT
agar (
1), mCCD agar (
23), and CSM agar (
28), were used in order
to obtain as many isolates as possible from the swabs. Further
cultivation was performed on Mueller-Hinton agar containing
5% defibrinated sheep blood. The plates were incubated for 48
to 72 h under microaerophilic conditions at 39°C. The bacteria
were stored as stock cultures in thioglycolate broth containing
15% glycerol at 70°C. Twenty Canadian
C. upsaliensis strains were kindly supplied by F. Rodgers and L. Price, Winnipeg,
Manitoba, Canada. Eighteen were of human origin, one was of
canine origin, and one was of feline origin. Six Australian
C. upsaliensis strains isolated from humans were kindly supplied
by G. Hogg, Melbourne, Australia. German
C. upsaliensis isolates
of human origin were not available.
Species determination.
C. upsaliensis isolates were identified by biochemical tests described in the literature (22, 24, 40, 41) by use of the following criteria: gram negative, spiral-shaped rod morphology, motility, requirement of microaerophilic growth conditions, cytochrome oxidase activity, weak or no catalase activity, lack of hippuricase activity, capacity to reduce nitrate, lack of H2S production on triple sugar iron agar, selenite reduction, and sensitivity to nalidixic acid and cephalothin. Indoxyl acetate activity was tested in some but not all isolates. The results were confirmed by using the species-specific PCR of Eyers et al. (9). Only isolates that reacted by conventional and molecular tests as described in the literature were included in the study.
Indirect hemagglutination.
Indirect hemagglutination was performed as described previously (34, 36, 50). Five heat-stable antigens specific for C. upsaliensis were determined by the serotyping scheme developed in our laboratories. In addition, the strains were tested with eight C. jejuni-specific antisera, two C. coli-specific antisera, and one C. lari-specific antiserum available in the laboratory. Serum hemagglutination titers of 1:80 and less were ignored. C. jejuni reference strains were purchased from the Culture Collection University of Göteborg (CCUG). The C. jejuni and C. coli wild-type strains used as reference strains were serotyped at CCUG. The bacterial strains used for antiserum production are listed in Table 1.
DNA preparation, primers, and PCR amplification.
The DNA preparation and PCR amplification procedures were performed
as described previously (
9,
34,
58). Briefly, for PCR amplification
DNA was extracted by heat treatment. The amplification reaction
was performed with Ready-To-Go PCR Beads (Amersham Pharmacia
Biotech, Freiburg, Germany). Primer sequences were deduced from
the sequences of the 23S rRNA and 16S rRNA genes of thermophilic
Campylobacter species (
9,
31) and ERIC sequences (
58), as described
before (
34). Each PCR included positive and negative controls.
Amplified samples were analyzed by electrophoresis on 1.2% agarose
gels and visualized by ethidium bromide staining under UV light.
The gels were photographed with a digital camera system (Herolab,
Wiesloch, Germany).
Macrorestriction analysis by PFGE.
PFGE was performed with the endonuclease XhoI, as described before (34), by using a CHEF DR III apparatus (Bio-Rad, Munich, Germany). The pulse interval was ramped from 0.3 to 12 s linearly for 24 h. Reference DNA of C. upsaliensis strain DSM 5365 digested with XhoI was run on each gel. Molecular size standard bacteriophage
concatamers (molecular size, 48.5 kb; New England Biolabs, Frankfurt, Germany) were run on three lanes (both edges and the middle) of each gel. Finally, the gels were stained with ethidium bromide, viewed under UV light and photographed with Polaroid film.
Computational analysis.
The electrophoretic patterns of the ERIC-PCR experiments were analyzed by using GelCompar II, version 2.50, software (Applied Maths BVBA, Kortrijk, Belgium; Herolab). Genetic similarities between isolates based on their positions and relative band areas were calculated by use of the algorithm of Ward (60) and the Pearson correlation coefficient (optimization, 0.0; tolerance, 0.0; for details, see the GelCompar II, version 2.50, manual). The following variable areas of the gel tracks were included in the analysis of genetic similarity: 20.5 to 56.6%, 62.6 to 65.7%, and 70.8 to 100%. Photographs of the gels from the PFGE experiments were scanned; and similarities were calculated by using the same software, algorithm, and coefficient, with a maximum tolerance of 1.0% and optimization of 0.5%. The reproducibility of the profiles was
94%. The jackknife statistical method (GelCompar II, version 2.50, software, for comparative analysis of electrophoresis patterns; Applied Maths) was applied to determine the significance of the defined similarity groups.
16S rDNA sequence analysis.
A 1,275-bp DNA stretch of the 16S rRNA-encoding gene (16S rDNA) was amplified by PCR with primers Cups-1 (5'-CCC ATA CTC CTA TTT AGC AT-3') and Cups-2 (5'-GAT TCC ACT GTG GGG GA-3'), as described by Linton et al. (31). The DNA sequences of the PCR products were analyzed by AGOWA Gesellschaft für molekularbioligische Technologie (Berlin, Germany) for the German strains and by the Federal Research Centre for Virus Diseases of Animals (Bundesforschungsanstalt für Viruskrankheiten der Tiere, Jena, Germany) for the Canadian and Australian strains. Briefly, the 16S rDNA fragments were amplified with primers Cups-1 and Cups-2. Bands were excised from 1% agarose gels, and DNA was extracted by using the QIAquick Gel Extraction kit (Qiagen, Hilden, Germany). Sequencing was performed as cycle sequencing with a BigDye Terminator Cycle Sequencing Ready Reaction kit (Applied Biosystems, Darmstadt, Germany), according to the instructions of the manufacturer. Primers Cups-1, Cups-2, Cups-4 (5'-GCA GTA GGG AAT ATT GCG-3'), Cups-5 (5'-CGC TAA GGC GCG AAA GCG-3'), and Cups-6 (5'-CAA ATC AGC CAT GTT GCG G-3') were used for sequencing. Nucleotide sequences were determined with an ABI Prism 310 genetic analyzer (Applied Biosystems). The processing of the sequence data was conducted with the Vector NTI Suite, version 8.0, program (Informax Inc., Oxford, United Kingdom).

RESULTS
Distribution of heat-stable antigens.
Ninety-four of 96
C. upsaliensis strains isolated in Germany,
Canada, and Australia were typed on the basis of their heat-stable
antigens by use of the serotyping scheme described previously
(Table
2; 34). Two serotypes, serotypes OIII and OIV, were present
in all three geographic groups at rates of 37.2 and 36.2%, respectively,
and were present at the same orders of magnitude in the Canadian
and the German strain collections (35.0 and 40.0%, respectively,
versus 35.3 and 36.8%, respectively). The number of Australian
strains tested (
n = 6) was too small to calculate the proportion.
Among the other serotypes, 6.4, 1.0, and 3.2% of the strains
were serotypes OI, OII, and OVI, respectively. Of 94
C. upsaliensis isolates, 16.0% did not react with any
C. upsaliensis antiserum.
Beyond this, heat-stable
C. upsaliensis antigens did not react
with antisera recognizing
C. helveticus OV;
C. jejuni O:1, O:2,
O:4, O:13, O:16, O:37, O:40, or O:43 (Penner);
C. coli O:20
or a non-cross-reacting
C. coli strain; or one untyped
C. lari strain available in the laboratory (
34,
35,
36).
View this table:
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TABLE 2. Heat-stable antigen specificities of C. upsaliensis strains originating from Germany, Canada, and Australia
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ERIC fingerprint analysis.
All
C. upsaliensis strains serotyped (
n = 94), with six of the
German strains tested in duplicate, were characterized by ERIC-PCR
(Fig.
1). Two main clusters that differed considerably with
respect to band pattern similarity were generated (80%
on the Ward scale of 100% through +100%). One cluster
contained the German strains, and the other one contained the
non-European strains. With an internal similarity of 50%,
the German strains, the most numerous group in this study, exhibited
remarkable intragroup heterogeneity. The two geographic regions
of Germany, approximately 400 km apart, from which the strains
were isolated were not reflected by the dendrogram. The non-European
cluster consisted of the Canadian strains, which exhibited an
internal similarity of 20%, and the Australian strains
were integrated into this group at a +40% similarity. Only one
German canine strain was included in the non-European cluster.
With respect to host association, the most numerous German cluster
contained canine and feline strains, whereas the non-European
cluster consisted of all human strains, two canine strains,
and one feline strains.
The results of statistical calculations assessing the stabilities
(significance) of the defined groups are shown in Table
3, which
presents the percentages of correct identifications for members
of a group. German strains were grouped in the German cluster
at a rate of 98.7%. Canadian strains were assigned to the Canadian
cluster at a rate of 94.7%, while 5.3% of Canadian strains exhibited
a higher degree of similarity to Australian strains. Of the
Australian strains, 83.3% were classified in the Australian
group.
Macrorestriction analysis.
For DNA macrorestriction analysis, 50 of 63 canine strains of
German origin were selected to ensure that the most prevalent
serotypes and the untypeable strains were represented in comparable
numbers. Isolates from all the other sources were included in
the total. Therefore, 83
C. upsaliensis strains were subjected
to macrorestriction analysis with the XhoI endonuclease.
In general, most of the isolates possessed a number of recognition sites for XhoI, yielding between 10 and 20 DNA bands (molecular sizes, up to approximately 250 kb; Fig. 2). Every isolate exhibited a unique restriction pattern, as shown in the dendrogram in Fig. 2. Two major PFGE groups that reflected each of the geographic and the host origins of the strains were differentiated. With regard to geographic origin, one group contained German strains at a rate of 73% and non-European strains at a rate of 11.5%. The second group consisted of non-European strains at a rate of 89.5% and German strains at a rate of 27%. With regard to host origin, one group contained strains of animal origin at a rate of 78.0% and strains of human origin at 37.5%. The other group consisted of strains of animal origin at a rate of 22.0% and strains of human origin at a rate of 62.5%. There was no association of PFGE groups with serotypes. The stability of the defined groups (significance) is shown in Table 3. On the basis of geographic origin, 96.5% of the German strains were grouped in the German cluster and 85.0% of the Canadian strains were grouped in the Canadian cluster, but only 16.7% of the six Australian strains were classified in the Australian cluster. On the basis of host association, 75.0% of the human strains were grouped in the human cluster, 88.2% of the canine strains were assigned to the canine cluster, and 25.0% of the feline strains were classified in the feline cluster.
Five strains (Fig.
2, diamonds) were isolated from the blood
and stool of a newborn girl in Canada and two pet animals living
in the same household. The results for these five strains are
presented separately in Fig.
3. Two strains, one isolated from
the baby's stool and a canine strain, exhibited identical band
patterns and serotypes (serotype OI). A second strain from the
child' stool and a strain from the child's blood were characterized
by identical serotypes (serotype OIV) that differed from those
of the first two strains and similar but not identical band
patterns. The differences were perhaps due to methodological
problems during strain preparation. The feline strain was unique.
Two other German feline strains (Fig.
2, dots) were isolated
from littermates, and two canine strains (Fig.
2, left-pointing
triangles) were isolated from animals living in one household.
16S rDNA sequence analysis.
Among the 83
C. upsaliensis strains investigated by macrorestriction
analysis, seven German, three Australian, and four Canadian
strains (Fig.
2, right-pointing triangles) were selected for
16S rDNA sequence analysis. According to Linton et al. (
31),
the major part of the 16S rRNA-encoding DNA sequence was amplified.
A DNA stretch of 1,169 nucleotides of each of the 14 strains
beginning at nucleotide position 225 (
64) (GenBank accession
number
L14628) was analyzed. This corresponded to 80.1% of the
entire 16S rRNA gene of
C. upsaliensis CCUG 14913, which comprises
1,460 nucleotides. The strains possessed identical nucleotide
sequences compared to the sequence of strain CCUG 14913, with
two minor variations. At position 377, the C in one Canadian
strain, two Australian strains, and one German strain was replaced
by G; and the G at position 382 was replaced by C in the same
strains.

DISCUSSION
C. upsaliensis is a microorganism that is widespread on all
continents and that is primarily isolated from the intestinal
environment of dogs. Its relevance as a pathogen that causes
enteric diseases in animals is not clear. However, on the basis
of a number of reports from different countries, it is recognized
as a human pathogen. The different frequencies of isolation
from humans may be due to the methodological approaches, the
need for supplements or intolerance to the antibiotics present
in growth media, or different socioeconomic conditions in different
countries. It may also be related to the development of genomic
characteristics of the microbe which cause differences in virulence
in different areas and continents. The analysis of the
C. upsaliensis strains from Germany, Canada, and Australia revealed a considerable
degree of genomic heterogeneity. These data are in accordance
with those from previous reports and may be due to the properties
of
Campylobacter strains which enable them to take up DNA from
the environment and integrate it into the genome or undergo
changes within the genome by rearrangement of DNA (
4,
16,
20,
59,
61,
62). Heat-stable antigen typing revealed that, in contrast
to
C. jejuni and
C. coli, which are divided into more than 60
heat-stable serotypes, as described by Penner and colleagues
(
50,
51),
C. upsaliensis seems to possess only a small number
of different heat-stable antigens. This is true not only for
strains isolated in Germany but also for strains isolated in
Canada and Australia. The difference in heat-stable (Penner-type)
antigen diversity between
C. jejuni-
C. coli and
C. upsaliensis may perhaps be due to different biochemical structures of the
respective antigens. Karlyshev et al. (
27) reported evidence
that the antigens of
C. jejuni accounting for the Penner serotype
specificity are capsular structures. It must be determined whether
the heat-stable antigens of
C. upsaliensis are capsular or lipooligosaccharide-lipopolysaccharide
in nature. Eighty-four percent of the strains belonged to five
different serotypes, and the ratio of serotypes was comparable
for all three continents. Two of the serotypes, serotypes OIII
and OIV, were prevalent at rates between 35 and 40% in Germany
and Canada. The number of Australian strains available for this
study was too small to calculate percentages. However, the tendency
for a serotypic prevalence was also seen among the Australian
strains, with four of the six strains belonging to serotype
OIII. Among the German and Canadian strains, serotypes OI, OII,
and OVI were detected at rates of 1.5 to 15%. These serotypes
were not identified among the few Australian strains. These
data point toward the clonal expansion of
C. upsaliensis and
indicate a high degree of conservation of heat-stable antigens
of the species during evolution. Between 10 and 17.7% of all
strains analyzed were untypeable with the available
C. upsaliensis-specific
antisera. Reactivity with antisera recognizing a number of heat-stable
antigens of other
Campylobacter species was not detected for
any of the
C. upsaliensis strains isolated in Germany, Canada,
or Australia. Antisera against
C. helveticus OV (
34), nine heat-stable
C. jejuni antigens mainly representing serotypes prevalent worldwide,
two
C. coli antigens, and one
C. lari antigen were included.
As reported previously (
29), South African
C. upsaliensis strains
reacted with antiserum against
C. coli O:28. It would have been
interesting to determine whether the strains investigated in
this study also shared antigenic determinants with
C. coli O:28.
Unfortunately, the strain or the respective antiserum was not
available. Therefore, this question could not be answered. Geographic
restrictions perhaps contribute to the different results.
Nevertheless, despite the negative results obtained in the present study, it is not surprising that some cross-reactivity exists between C. upsaliensis and other closely related bacterial species.
In contrast to serotyping, genotypic methods (ERIC-PCR and PFGE) revealed a high degree of genomic heterogeneity within the species C. upsaliensis. ERIC-PCR profile analysis demonstrated the discriminatory potential of this method, as described before (34, 57, 58). Beyond this, it divided the strains into two clearly distinct genotypic clusters, a Canadian-Australian (non-European) cluster and a German (European) cluster, whereas the local origins of German strains were not reflected by the dendrogram. The jackknife calculations confirmed the validity of the defined groups, with the limitation that the assignment of Australian strains to the respective group might not have been sufficiently valid, since only six strains were available for the study. With respect to host origin, it could be noticed that the non-European strains, regardless of animal or human origin, were assembled in one group and that the German strains, both canine and feline, with one exception (a canine strain), were assembled in the other. The serotypic groups did not correlate with the genotypic clusters. The results give rise to the suspicion that diversification of the species into serotypes developed before dispersal of the species to different continents. In comparison to a collection of 88 German C. jejuni strains characterized previously (35), the C. upsaliensis strains formed a separate phylogenetic cluster, despite their intraspecies heterogeneity.
In the tree determined by XhoI macrorestriction analysis, intraspecies clustering was also detected. Two clusters were generated: one of them contained 73% of the German strains and 11.5% of the non-European strains, and the second cluster consisted of 88.5% of the non-European strains and 27% of the German strains. With regard to host origin, one cluster contained 78.0% of strains of animal origin and 37.5% of strains of human origin. The second cluster consisted of 22.0% of animal origin and 62.5% of strains of human origin. Subclusters reflecting the local origins of the German strains were, again, not detected, and an association of genotypic clusters with serotypes was also not found. The significance of the defined groups was again confirmed by jackknife calculations, with the limitation that the assignment of Australian and feline strains to the respective groups might not have been sufficiently strong, since only six and seven strains, respectively, were available for the study. The findings of Stanley et al. (55), who identified genotypic differences between human and canine strains by 16S rRNA ribotyping, could not be confirmed by the methods used in the present study.
The high degree of 16S rDNA sequence similarity among the 14 C. upsaliensis isolates sequenced was in marked contrast to the high degree of heterogeneity of the whole genome and confirmed the idea that all the strains belonged to one species. Among the whole 16S rDNA length of 1,169 nucleotides, only one nucleotide was changed at each of two positions, and these changes were identical in the four strains from three continents. With these exceptions, all 14 strains exhibited 16S rDNA sequences identical to that of C. upsaliensis strain CCUG 14913 supplied in the database (64).
Investigating C. upsaliensis isolates originating from different continents and hosts, we intended to analyze the differences in the distributions of genomic characteristics in bacterial populations. The methods used in this study enabled us to detect and describe differences in structural but not functional aspects. The phenomenon that bacterial populations from different continents possess similar antigenic characteristics points toward a common source early in evolution. The Canadian and Australian strains assembled in one genotypic cluster more or less strictly separated from the German strains and may have been distributed to their continents from a common source at a later time.
The possible significance of C. upsaliensis in human disease is increasingly realized. The findings that strains from different continents exhibit significant differences in their genomic characteristics may point toward the possibility of differences concerning pathogenicity or host adaptation. Further studies are necessary to confirm the significance of these results.

ACKNOWLEDGMENTS
We gratefully acknowledge the donation of
C. upsaliensis strains
from Canada and Australia by F. Rodgers and L. Price and by
G. Hogg, respectively. We thank P. Schwerk for excellent technical
assistance.

FOOTNOTES
* Corresponding author. Mailing address: Bundesforschungsanstalt für Viruskrankheiten der Tiere, Institut für bakterielle Infektionen und Zoonosen, Naumburger Str. 96a, D-07743 Jena, Germany. Phone: 0049 3641 804 328. Fax: 0049 3641 804 228. E-mail:
i.moser{at}jena.bfav.de.


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Journal of Clinical Microbiology, August 2004, p. 3441-3448, Vol. 42, No. 8
0095-1137/04/$08.00+0 DOI: 10.1128/JCM.42.8.3441-3448.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
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