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Journal of Clinical Microbiology, November 2005, p. 5462-5469, Vol. 43, No. 11
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.11.5462-5469.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
E. Tarcha,1
P. W. Thomas,1,
and
G. T. Cole1
Department of Medical Microbiology and Immunology, Medical College of Ohio, Toledo, Ohio,1 Departments of Pathology and Medicine, Veterans Administration San Diego Healthcare System and University of California San Diego, San Diego, California2
Received 23 June 2005/ Returned for modification 1 August 2005/ Accepted 15 August 2005
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Construction of the pCE-CTS1 plasmid used for expressing the C. posadasii chitinase protein. A coccidioidal protein expression vector (pCE) (Fig. 1A) was constructed using standard molecular cloning methods (10). The pCE vector contains the promoter and terminator of the heat shock protein gene (HSP60) of C. posadasii and the hygromycin resistance gene, HPH, derived from pAN7-1 (17). The 0.54-kb promoter and 0.41-kb terminator were amplified from the DNA template isolated from an HSP60 genomic clone (22) by PCR using primer pairs A-B and C-D (Table 1), respectively. To facilitate cloning, restriction sites were added to the 5' ends of the upstream and downstream primers (primers A to D in Table 1). A 3.9-kb fragment harboring the hygromycin resistance gene (HPH) was obtained by digestion of the pAN7-1 plasmid with BglII and XbaI restriction enzymes. The 8,112-bp pCE plasmid was constructed by subsequently cloning the digested HSP60 promoter (HindIII and SpeI) and terminator (SpeI and BglII) and the HPH gene (BglII and XbaI) into the pZErO-2.1 plasmid (Invitrogen, Carlsbad, Calif.). To construct the CTS1 expression vector, pCE-CTS1 (Fig. 1B), one pair of primers with an engineered SpeI site (primers E and F) (Table 1) was used to amplify a 1.6-kb PCR product using the CpCTS1genomic clone as a template (16). A SpeI-restricted CTS1 fragment was inserted into pCE using the same restriction site to yield the pCE-CTS1 plasmid. This plasmid was then used to transform an Escherichia coli strain, TAM-1 (Activemotif, Carlsbad, Calif.). The pCE-CTS1 plasmid was amplified from the transformed bacteria, isolated, and used for subsequent transformation of U. reesii.
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FIG. 1. Representations of pCE vector (A) and pCE-CTS1 plasmid (B). The hatched box represents an 18-nucleotide fragment that encodes the His tag. Primer pairs used to amplify CpHSP60 (A-B and C-D), as well as CpCTS1 (E-F), genes are positioned, and their sequences are presented in Table 1. Two XbaI sites used to release the Cts1 expression cassette are indicated.
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TABLE 1. PCR primers used to construct pCE-CTS1 plasmid
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Screening of pCE-CTS1 transformants. To obtain DNA for PCR screening, approximately two inoculating loops of fungal mycelia were isolated from plate cultures of each of the putative transformants or the parental strain and transferred separately to 2-ml microcentrifuge tubes containing 100 mg of glass beads (0.45 to 0.55 mm in diameter) and 0.5 ml of CTAB buffer (2% hexadecyltrimethyl ammonium bromide, 1.4 M NaCl, 100 mM Tris-HCl [pH 8.0], 20 mM EDTA, 0.2% ß-mercaptoethanol). The fungal cells were homogenized using a Mini-Beadbeater (Biospec, Bartlesville, OK) at 3,000 rpm for 60 s, incubated at 60°C for 30 min, extracted with 0.5 ml chloroform-isoamyl alcohol (24:1), and centrifuged (16,500 relative centrifugal force; 10 min). The DNA present in the aqueous phase was precipitated with ethanol in accordance with standard protocols. The transformants were screened for the presence of CpCTS1 by PCR using primers E and F (Table 1). Expression of His-tagged Cts1 protein from pCE-CTS1-transformed U. reesii was examined by Western blot analyses. Putative transformants or the parental strain was grown in 2 ml GYE plus 50 µg/ml HmB or in GYE alone for 5 days at 30°C, followed by 24 h of growth at 37°C. Proteins were prepared from 0.3 ml culture (hyphae plus media) by sonication, separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; 15 µl of the preparation), transferred onto polyvinylidene difluoride membranes (Bio-Rad Laboratories, Inc. Hercules, Calif.), and probed with an anti-His-tag monoclonal antibody (Sigma Chemical Co., St. Louis, Mo.) using standard protocols (2).
Heat shock-induced expression of the U. reesii-expressed recombinant Cts1 protein (rCts1Ur). The pCE-CTS1-transformed U. reesii (no. 8) bacteria were grown in GYE medium on a gyratory shaker at room temperature (25°C) for 4 days. Fungal cultures were allowed to continue to grow at either room temperature or elevated temperature (37°C) for an additional 24 h. The proteins were then isolated from each culture filtrate by ammonium sulfate precipitation (90% saturation) and subjected to SDS-PAGE analyses.
Isolation of rCts1Ur. The pCE-CTS1-transformed U. reesii (no. 8) was grown in GYE medium at 30°C for 3 to 4 days, followed by overnight growth at an elevated temperature (37°C) for isolation of the expressed rCts1Ur protein. Culture filtrates were collected and subjected to ammonium sulfate precipitation (90% saturation). The protein precipitate was solubilized in water, exhaustively dialyzed against sterile distilled water, and subjected to nickel column chromatography according to the manufacturer's recommendation (Novagen, Madison, Wis). The purified rCts1Ur was analyzed using surface-enhanced laser desorption-ionization time-of-flight (SELDI-TOF) mass spectrometry to determine its molecular mass and homogeneity as described previously (3). The purified rCts1Ur was also subjected to trypsin digestion, followed by peptide fingerprinting analysis using matrix-assisted laser desorption-ionization (MALDI) (12). This procedure was performed to confirm that the isolated recombinant protein was the product of the expression of the pCE-CTS1 construct.
Partial purification of Cts1 protein from Coccidioides posadasii. Total protein containing Cts1 was precipitated from 10-day-old mycelial culture filtrate using ammonium sulfate (90% saturation), and the Cts1 protein was further purified by hydrophobic interaction and ion-exchange chromatography. The (NH4)2SO4 precipitates were resuspended in 20 mM Tris-HCl, pH 8.0 (buffer A), and 0.4 M (NH4)2SO4 and loaded onto a 1- by 10-cm phenyl-Sepharose hydrophobic interaction column. Proteins were eluted with a linear gradient of (NH4)2SO4 from 0.4 to 0 M in buffer A. Fractions containing Cts1 were identified by the enzymatic assays described below, dialyzed against 20 mM Tris-HCl, pH 9.0 (buffer B), and loaded onto a Q-hyperD high-performance liquid chromatography column (Beckman, Fullerton, Calif.). The Cts1 protein was eluted with a linear gradient of NaCl from 1 to 0.1 M in buffer B.
Isolation of the bacterium-expressed recombinant Cts1 protein (rCts1Ec). The full-length open reading frame (1,281 bp) plus stop codon of the CpCTS1 gene was amplified by PCR using sense and antisense primers engineered to include restriction sites for ease of subcloning into an expression vector. The nucleotide sequences of these primers were as follows: 5'-ACCATGGGGTTCCTTATTGGCGC-3' and 5'-TCTCGAGTCAACTTGGCATCCCATTC-3' (the underlined sequences represent the NcoI and XhoI restriction sites, respectively). The PCR-amplified 1.3-kb product was digested with NcoI and XhoI and ligated into the same enzyme restriction sites of the pET32b vector (Novagen). The sequence of the plasmid insert was confirmed by DNA sequencing. The pET32-CTS1 construct was used to transform the E. coli strain BLR (DE3). The N terminus of the pET32-CTS1 construct contained a 109-amino-acid thioredoxin sequence for enhancing the solubility of the target proteins (9), a polyhistidine (His6) sequence for facilitating protein purification, and a thrombin site sequence for removing thioredoxin from the fusion proteins. Growth of the transformed cells, induction of expression, and purification of the recombinant protein were conducted according to the manufacturer's protocol. The nickel affinity-purified rCts1Ec was subjected to thrombin digestion using a biotinylated thrombin kit (Novagen) for 2 h at room temperature with the enzyme diluted 1:50 in the reaction solution according the manufacturer's recommendations (Novagen). The biotinylated enzyme was removed at the end of the digestion reaction by streptavidin agarose (Novagen), and the thrombin-released 109-amino-acid thioredoxin with a His tag was removed by nickel affinity chromatography. The mass of the purified rCts1Ec was determined by SELDI-TOF mass spectrometry as described above.
Deglycosylation. Deglycosylation was performed by incubation of the boiled rCts1Ur protein (1 µg) with 500 units of peptide-N-glycosidase F (PNGase F) (New England BioLabs, Beverly, Mass.) in a total 13-µl solution for 90 min at 37°C according to the manufacturer's protocol.
Chitinase assay. 4-Methylumbelliferyl ß-D-N,N'-diacetylchitobioside [4-MU-(GlcNac)2; Sigma] and 4-methylumbelliferyl ß-D-N,N',N"-triacetylchitotrioside [4-MU-(GlcNac)3; Sigma] were used as substrates to determine exochitinase and endochitinase activities, respectively. Chitinase activity was assayed by incubating 20 µl of 100 µM 4-MU-(GlcNac)2 or 4-MU-(GlcNac)3 dissolved in 50 mM sodium phosphate buffer, pH 6.2, and 20 µl of the test sample in wells of a 96-well, flat-bottom, untreated black microtiter plate (Corning Inc., Acton, Mass.) at 37°C for 10 min (11). The reactions were terminated by the addition of 100 µl 1 M glycine-NaOH, pH 10.6. The product of the chitinolytic reaction, 4-MU, is fluorescent under alkaline conditions. Fluorescence was measured using an HTS 7000 microtiter plate fluorometer (Perkin-Elmer, Boston, Mass.) with excitation at 360 nm and emission at 465 nm. One unit of enzyme was defined as the amount of enzyme able to liberate 1 µmol of 4-methylumbelliferone per min under the described assay conditions. Samples were assayed in triplicate.
ID-CF assay. The immunodiffusion (ID) assay was performed by a method previously described (8) for examining complement fixation (CF) antigenicity of the purified rCts1Ur and rCts1Ec. The reference Coccidioides immitis CF antigen (Ag) and goat anti-CF reference serum were obtained from Meridian Diagnostics (Cincinnati, Ohio). The volume of antigen or serum added to each well of the ID-CF plates was 10 µl unless otherwise specified. Precipitin lines were visible within 48 h and were documented by photography. Comparisons of the protein contents of the reference CF Ag (10 µl) and rCts1Ur (0.25 µg), which were used in the ID-CF assays, were conducted by SDS-PAGE separation and silver staining using a SilverQuest kit (Invitrogen).
Complement fixation assay. The complement fixation assay was performed in the Clinical Microbiology Laboratory at the VA San Diego Healthcare System using standard techniques.
ELISA. Human sera obtained from 77 coccidioidomycosis patients and 31 control individuals were tested for seroreactivity to the recombinant Cts1 by standard enzyme-linked immunosorbent assay (ELISA) methodology. All sera were anonymous except for the CF titer, and the protocol for this study was approved by the University of California San Diego Institutional Review Board. ELISA plate wells (Immulon 2HB Flat Bottom Microtiter plates; ThermoLab Systems, Franklin, Mass.) were coated with 50 ng of rCts1Ur or rCts1Ec in 50 µl of phosphate-buffered saline buffer (pH 7.4) overnight at 4°C. Wells without protein coating were used as a blank control for each serum sample examined. The plates were blocked with 1% casein in phosphate-buffered saline plus 0.1% Tween 20 for 1 hour, and the coated wells were reacted with 50 µl of diluted human sera for 2 h, followed by 45 min of incubation with 50 µl of 1:8,000-diluted HRP-rec-Protein G peroxidase conjugate (Zymed Laboratories, San Francisco, Calif.). The peroxidase substrate (100 µl), tetramethyl benzidine (Sigma), 10 mg/ml in 0.1 M sodium acetate, pH 6.0, with 0.1% H2O2, was then added to each well and allowed to develop for 30 min. The reaction was terminated by the addition of 50 µl of stop solution (2.4 N sulfuric acid), and the ELISA plates were read within 30 min at 450 nm in an Emax precision microplate reader (Molecular Devices, Sunnyvale, Calif.).
Statistical analyses.
Statistical analyses were performed using the SPSS program (SPSS Inc., Chicago, Ill.). Spearman's rank correlation test was used for analysis of the correlation between the ELISA optical density (OD) and CF titers. The difference in the reactivities of rCts1Ur and rCts1Ec was analyzed by a paired t test. A probability value of
0.05 was considered to be significant.
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Transformation of U. reesii with pCE-CTS1. Approximately 5 x 105 protoplasts of U. reesii were transformed with 3 µg of pCE-CTS1 DNA. A total of 23 HmB-resistant transformants were obtained. Three out of eight randomly selected HmB-resistant transformants were shown to contain the heterologous CTS1 gene and to express His-tagged recombinant Cts1 protein by PCR screening and Western analyses (Fig. 2). The 1.6-kb PCR amplicon of the introduced CpCTS1 gene was evident among the U. reesii transformants (Fig. 2A, lanes 2 to 4), but not the parental strain (lane 1). Various amounts of His-tagged rCts1Ur were detectable in the crude preparation of cytosol plus culture filtrate from pCE-CTS1 transformants by Western analysis using the anti-His-tag monoclonal antibodies (Fig. 2B, right, lanes 2 to 4). Clone number 8 of the pCE-CTS1 transformants expressed the largest amount of detectable rCts1Ur and was used as the source for scale-up production of rCts1Ur.
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FIG. 2. Confirmation of pCE-CTS1 transformants 2, 3, and 8 (lanes 2 to 4, respectively) by PCR amplification of the inserted CpCTS1 gene (A) and detection of the expressed rCts1Ur protein (B). (A) Ethidium bromide-stained electrophoresis gel of PCR products amplified from a parental strain of U. reesii (lane 1) and the pCE-CTS1 transformants. std., standards. (B) Proteins prepared from cytosol plus culture filtrate of the parental strain (lanes 1) or transformants were separated in a 10% SDS-PAGE and stained with Coomassie blue (left) or detected by anti-His-tag antibodies in a Western blot (right).
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FIG. 3. (A) SDS-PAGE separation of U. reesii-expressed recombinant Cts1 protein (lanes 1 and 2) and partially purified native CpCts1 (lanes 3 and 4). Total proteins were prepared from non-heat-shocked (lane 1) or heat-shocked (lane 2) culture filtrate by ammonia sulfate precipitation. rCts1Ur was isolated by Ni affinity chromatography (lane 3) and reacted with an anti-His-tag antibody (lane 5; Western blot). (B) Molecular sizes of rCts1Ur and native CpCts1 (nCts1) were determined by SELDI-TOF mass spectrometry. (C) Deglycosylation of rCts1Ur using PNGase F. Coomassie blue-stained SDS-PAGE revealed untreated rCts1Ur (lane 1), enzyme-treated rCts1Ur (lane 2), and PNGase F alone (lane 3) as a reference. SELDI-TOF mass spectrometry of the enzyme-treated rCts1Ur is also presented. std., standards.
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FIG. 4. ID-CF assays (A to C) using the isolated rCts1Ur as an antigen. (A) Samples in wells are reference CF Ag (wells 1 and 4); 1 µg, 0.5 µg, 0.25 µg, or 0.125 µg of rCts1Ur (wells 2, 3, 5, and 6, respectively); and reference CF antibody (Ab) (well 7). (B) Samples in wells are reference CF Ab (wells 1 and 4), sera from coccidioidomycosis patients (wells 2 and 5), rCts1Ur (well 6), heat-treated rCts1Ur (well 3), and reference CF Ag (well 7). (C) Samples in wells are reference CF Ab (wells 1 and 4), sera from patient (wells 2 and 5), sera from healthy individuals (wells 3 and 6), and rCts1Ur (well 7). (D) Protein samples of reference CF Ag or rCts1Ur used in the ID-CF assays were separated in an SDS-PAGE (12%) and stained with silver reagents. std., standards.
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TABLE 2. Molecular masses of peptides derived from trypsin digestion of the purified rCts1Ur protein measured by MALDI mass spectrometry compared to the predicted molecular masses of translated peptides of CTS1
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TABLE 3. Chitinolytic activities of native CpCts1 and the isolated recombinant Cts1
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Serologic activity. ID-CF assay and ELISA were used to confirm the seroreactivity of the purified rCts1Ur. The results of a titration of rCts1Ur in the ID-CF assay suggested that 25 µg/ml rCts1Ur has seroreactivity comparable to that of the reference CF antigen provided by the manufacturer (Fig. 4A). Immunodiffusion resulted in a single precipitin line yielding a line of identity between the purified rCts1Ur and the ID-CF reference antigen (Fig. 4B). This suggested that antigenic epitopes are shared by the rCts1Ur and the coccidioidal CF antigen. The CF antigen of Coccidioides has been reported to be heat labile (4). Heat treatment (65°C; 10 min) of rCts1Ur abolished its ability to form precipitin lines with either the reference antibody or sera from coccidioidomycosis patients (Fig. 4B). Precipitin lines were visible between wells of rCts1Ur and patient serum in the ID-CF assay (Fig. 4B and C), but not sera from healthy individuals, suggesting that rCts1Ur could be used for the serodiagnosis of coccidioidomycosis. Protein profiles of rCts1Ur and reference CF antigen used in ID-CF assays are shown in a silver-stained SDS-PAGE gel (Fig. 4D). It is evident that the commercial reference CF antigen contains proteins other than Cts1.
A total of 108 serum samples (1:640 dilution) were tested for reactivity to the isolated rCts1Ur by ELISA. The range of adjusted absorbances (absorbance of antigen-coated wells minus absorbance of buffer-coated wells) of 31 CF-negative sera was from 0.000 to 0.226, with a mean of 0.07 and standard deviation of 0.06. A cutoff value of 0.19 (mean plus 2 standard deviations) was imposed to define positive reactivity of sera with rCts1Ur. Seventy-four out of the 77 coccidioidomycosis patients examined (96.1%) were positively identified by ELISA (range, 0.271 to 2.571 at a 1:640 dilution) using the 0.19 cutoff value, and one of the 31 control sera (3.2%) was false positive. All three false-negative sera (range from 0.122 to 0.183) had low CF titers; two of them were 1:2, and the third was 1:4. A direct correlation was also observed between the ELISA OD readings and the CF titers (r = 0.429; P < 0.01) (Fig. 5) of the patient sera.
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FIG. 5. Correlation of CF titer with reactivity at a single dilution in the rCts1Ur ELISA.
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FIG. 6. Endpoint titers of CF-positive and control sera. The endpoint was defined as an OD of 0.20, which is more than twice the value obtained with human serum binding to blank wells. The lines represent the medians of the two groups.
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FIG. 7. Expression and seroreactivity of rCts1Ec. (A) SDS-PAGE analysis of expression of rCts1Ec. Lanes 1 to 4 show electrophoretic separation of cytosolic proteins from bacteria transformed with either pET32b alone (lanes 1 and 2) or pET32b-CTS1 (lanes 3 and 4) without IPTG induction (lanes 1 and 3) and with IPTG induction (lanes 2 and 4). Lanes 5 and 6 show the nickel affinity-purified rCts1Ec before and after thrombin cleavage, respectively. std., standards. (B) ID-CF assays. Samples in wells are 4 µg, 2 µg, 1 µg, or 0.5 µg of rCts1Ec (wells 1 to 4, respectively); 0.25 µg (well 5) or 1 µg (well 6) of rCts1ur; and reference antibody (well 7). (C) Comparison of reactivity of rCts1Ur (closed circles) and rCts1Ec (open circles) with sera (1/100 to 1/512,000; twofold dilution) from three coccidioidomycosis patients, using ELISA.
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We produced and purified the rCts1Ur protein and studied its enzymatic activity and antigenicity in several types of assays. The conditions for inducing rCts1Ur production and the protocol for protein purification reported here might not be optimal; however, milligrams of rCts1Ur can be isolated from 1 liter of growth medium. The fate of the introduced foreign DNA has not been determined in the pCE-CTS1 transformants. However, based on the larger amounts of rCts1Ur produced in transformant no. 8 compared to others, we believe that multiple-copy random integration might have occurred in this transformant.
The rCts1Ur was glycosylated, and the amino acid sequence matched the predicted amino acid sequence. A significant drawback for the use of a commercially available eukaryotic system to express recombinant proteins is hyperglycosylation, as has been demonstrated for recombinant Trichoderma chitinase in transformed Pichia pastoris (23). rCts1Ur expressed in U. reesii had electrophoretic mobility similar to that of the native Cts1 protein (Fig. 3A), suggesting that hyperglycosylation did not occur in this system. The production of enzymatically active and seroactive rCts1 from C. posadasii strain Silveira in bacteria has been reported (5, 24). A minimum of 2.5 µg of protein in 10 µl well was required to produce a visible precipitation line between the chitin affinity-purified rCts1 and the pooled patient sera (5). This result is comparable to our results with rCts1Ec in the ID-CF assays (2 µg per 20-µl well). We compared bacterially and fungally expressed rCts1 of C. posadasii strain C735 and showed that rCts1Ur had superior chitinolytic activity and higher seroreactivity than the bacterially expressed rCts1Ec in the ID-CF assay and slightly higher reactivity in the ELISA. These results may be due to better folding of rCts1Ur in the fungal host. We have also demonstrated that heat inactivated chitinolytic activity and abolished seroreactivity, suggesting that conformation is critical for rCts1Ur to be functional.
The CF test is particularly useful because it has prognostic as well as diagnostic value (15, 21). However, it is technically difficult, relatively slow, and labor-intensive, so a convenient assay, such as an ELISA, would be an important step forward. We tested rCts1Ur in an ELISA. We found that 92 to 96% of CF+ sera were reactive in the ELISA. The lower limit of detection was set high enough that very few of the sera from people who were CF negative had a positive reaction. The OD reading of ELISA also correlated to some degree with the CF titer of the examined sera. However, the endpoint titers of the sera did not correlate with the CF titers. These results suggest caution in replacing the CF assay with the ELISA against rCts1Ur. Although the sensitivity of diagnosis of coccidioidomycosis using the CF antigen is high, cross-reactivity of native CF antigen and the bacterium-expressed rCts1 with sera from patients with histoplasmosis and blastomycosis has been documented (25, 26). The highest percentage of cross-reactivity has been from the native CF antigen with sera from patients with histoplasmosis. We also found that sera from patients with histoplasmosis reacted in the rCts1Ur ELISA (data not shown). Among the limited numbers of sera we have tested, rCts1Ur reacted positively with more sera from patients with histoplasmosis than sera from patients with blastomycosis. More studies are needed to evaluate serospecificity using rCts1Ur by our ELISA method. However, it is clear that expression of rCts1Ur using U. reesii provides proper folding of the expressed protein, which is important for retaining its chitinolytic activity and functional CF antigenicity. This is a major advantage of U. reeseii over prokaryotic expression systems. Expression of C. immitis proteins in U. reeseii may provide a substantial step forward in the expression of C. immitis proteins for design of immunologic tests for coccidioidomycosis.
We thank Jayne Chu for providing control sera.
Present address: Department of Medicine, University of WisconsinMadison, Madison, WI 53705. ![]()
Present address: College of Pharmacy, The University of Texas at Austin, Austin, TX 78758. ![]()
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