Previous Article | Next Article ![]()
Journal of Clinical Microbiology, March 2005, p. 1105-1111, Vol. 43, No. 3
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.3.1105-1111.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Infectious Diseases, Faculté de Médecine de l'Université de Sherbrooke,1 Direction de la Santé Publique, Régie Régionale de la Santé et des Services Sociaux de l'Estrie, Sherbrooke, Québec, Canada,2 Infectious Diseases Section, VA Boston Healthcare System, and Boston University School of Medicine, Boston, Massachusetts3
Received 20 July 2004/ Returned for modification 5 September 2004/ Accepted 20 November 2004
|
|
|---|
|
|
|---|
Molecular strain typing methods have helped clarify the epidemiology of other bacterial infections. Pulsed-field gel electrophoresis (PFGE) is a highly reproducible and discriminatory technique for the molecular typing of C. jejuni (4). The combination of new protocols which provide results in 24 h (10, 14) and computerized systems for the analysis of numerous PFGE patterns across multiple gels (12) allow real-time molecular surveillance of Campylobacter enteritis. Canadian and American reference laboratories participating in the Centers for Disease Control and Prevention's PulseNet program already perform such surveillance for enteritis due to other bacterial pathogens (i.e., E. coli O157:H7, Salmonella spp., and Shigella spp.) (15), but its application to Campylobacter remains controversial, considering the large number of isolates that must be analyzed compared to the small number of outbreaks reported (7).
A recent preliminary molecular typing study of Campylobacter (12) combined with data regarding the dates and locations of isolation of the isolates suggested that 49% of the isolates from the Eastern Townships, Québec, and 39% of the isolates from Montreal belonged to clusters of potentially related isolates and that Campylobacter jejuni outbreaks may be more common than was previously suspected on the basis of traditional epidemiological data alone. That study (12) also indicated that clinical descriptive data were insensitive and unreliable for identification of the sources of sporadic cases of campylobacteriosis. Therefore, we hypothesized that continuous surveillance performed by combining clinical and molecular epidemiology analyses would identify related cases more rapidly and more accurately and could determine the sources of Campylobacter enteritis in the community.
This paper describes the application of PFGE to the real-time genotyping of isolates gathered over a 15-month period during a prospective case-control study of Campylobacter enteritis in the townships of the Eastern Townships, Québec, Canada. The genotypes of Campylobacter isolates from fresh whole retail chickens purchased in the Eastern Townships during the same study period were included for comparison.
|
|
|---|
From November 2000 to November 2001, four fresh eviscerated whole chickens were bought weekly in different counties (one chicken per store); for each county, the number of chickens sampled monthly was proportional to the population. Retail chickens sold in the Eastern Townships are produced by multiple companies based elsewhere in Québec Province. Campylobacters were isolated from the whole retail chickens as described previously (11).
Molecular epidemiology study. The molecular epidemiology study was performed in two phases to compare the identities of the isolates involved in putative outbreaks on the basis of clinical surveillance without and with molecular typing. Initially (phase I; 1 July 2000 to 30 April 2001), isolates were typed retrospectively and clinical and molecular epidemiological data were analyzed separately. During the second phase of the study (phase II; 1 May to 30 September 2001), all isolates were typed prospectively each week and clinical and molecular data were analyzed jointly, in collaboration with public health nurses.
PFGE. C. jejuni isolates were grown on 5% sheep blood agar for 48 h at 37°C in a microaerobic atmosphere. Bacterial colonies were harvested and resuspended in 1,000 µl of cold suspension buffer (100 mM Tris, 100 mM EDTA [pH 8.0]). The optical densities of the bacterial suspensions were then adjusted to 1.9 to 2.0 µm at 405 nm, and 340-µl aliquots were gently mixed with 12.5 µl of proteinase K (20 mg/ml) and 170 µl of Seakem Gold agarose 1.5% (FMC BioProducts, Rockland, Maine) prepared in TE (10 mM Tris, 1 mM EDTA [pH 8.0]). The resulting mixture was poured into plug molds and allowed to solidify at 4°C for 20 min. The plugs were then incubated with 5 ml of cell lysis buffer (50 mM Tris, 50 mM EDTA [pH 8.0], 1% N-lauroyl sarcosine) supplemented with 25 µl of proteinase K (20 mg/ml) in a 50°C water bath with constant agitation (150 rpm) for 1 h, transferred to 40-ml polypropylene flat-bottom tubes, and washed six times for 10 min for each wash in a 50°C water bath with constant agitation (150 rpm): twice with 15 ml of preheated (50°C) water and four times with 10 ml of preheated (50°C) TE (10 mM Tris, 0.1 mM EDTA [pH 8.0]). Individual plugs were then washed twice for 10 min each time at room temperature with agitation in 300 µl of 1x NE 1 buffer (New England Biolabs, Inc., Beverly, Mass.) and transferred to 300 µl of fresh buffer-bovine serum albumin (0.1 mg/ml), and the DNA was digested with 20 U of KpnI for 2 h in a 37°C water bath. The digests were electrophoresed at 200 V in a 1% SeaKem Gold agarose gel (FMC BioProducts) in 0.5x TBE (Tris-borate-EDTA) buffer at 14°C (CHEF Mapper; Bio-Rad Laboratories). The pulsing was set to ramp from 4 to 13.6 s over 14 h. The gels were stained for 20 min in 1 liter of sterile water containing ethidium bromide (1 mg/ml), destained by two washes of 30 min each in 1 liter of sterile water, and photographed under UV light by using a digital camera.
Each gel comprised 15 lanes and included SmaI digests of Staphylococcus aureus NCTC 8325 in lanes 2, 8, and 14 as a reference standard and a KpnI digest of C. jejuni strain 153B-80 in lane 13 as a reproducibility control. Lanes 1 and 15 were left blank; the remaining lanes were used for the study isolates.
BioNumerics software analysis. The PFGE fingerprinting patterns were analyzed with BioNumerics software (version 2.0 for Windows; Applied Maths, Kortrijk, Belgium). Restriction fragments were identified visually, and the PFGE patterns were normalized by interpolation to the nearest reference lane. The molecular sizes of the fragments detected for the study isolates were calculated on the basis of the sizes of the fragments of S. aureus NCTC 8325. Only fragments in the size range from 80 to 674 kb were analyzed; smaller fragments were not consistently resolved. Optimization of 1.0% and a position tolerance of 1.25% were applied. Dice similarity coefficients (SCs) were calculated on the basis of pairwise comparisons of the PFGE profiles of the study isolates. The matrix of coefficients was used to generate dendrograms based on the unweighted pair group method with arithmetic averages.
Criteria used to define clusters. Three different sets of criteria were used to define clusters of related study isolates. (i) Isolates were considered to have closely related genotypes on the basis of the molecular typing results if their PFGE profiles were related at a level equal to or greater than 0.90, as determined by the BioNumerics software analysis. (ii) Genotypically related isolates were considered clustered in space if they were cultured from patients whose infection was acquired in Québec Province; infections acquired in a foreign country were excluded. (iii) Isolates that were genotypically and geographically related were also considered clustered in time if there was less than 2 months between the times of infection with sequential isolates. Hypotheses regarding putative sources of infections were generated by analyzing the epidemiological questionnaires for related cases.
|
|
|---|
In the questionnaire, the case patients were specifically asked, as an open-ended question, what they considered to be the probable source of their infection. The responses were chicken (10%), contaminated water (9%), an animal contact (9%), raw milk (7%), beef (4%), other food (6%), traveling abroad (3%), an infectious contact (2%), and other sources (5%). However, 45% of the case patients could not identify any putative source of infection.
Molecular typing of Campylobacter isolates from patients with enteritis. A total of 184 of the 201 Campylobacter isolates of human origin were sent to our laboratory and typed by PFGE; 172 (93.4%) of the isolates represented C. jejuni; the remainder included C. coli (n = 7), C. lari (n = 2), C. fetus (n = 1), and C. upsaliensis (n = 2). Overall, 144 isolates belonged to patients included in the case-control study (102 isolates during phase I of the study and 42 isolates during phase II) and 40 isolates belonged to excluded cases (29 isolates during phase I and 11 isolates during phase II).
Among the 43 gels analyzed, there was a 100% SC between the 43 reproducibility control isolates and a 91% SC between the 124 S. aureus NCTC 8325 isolates (dendrogram not shown). Only one Campylobacter isolate was untypeable by PFGE. We identified 101 different PFGE patterns among the 183 isolates analyzed, with an overall SC of 11.7%.
Molecular typing of Campylobacter isolates from fresh whole retail chickens. A total of 177 chickens from 58 different food stores were cultured (median number per month, 16; range, 8 to 20) (11). Campylobacter spp. were cultured from 41 of the chickens (23%; C. jejuni, n = 37; C. coli, n = 4). There was no correlation between the monthly prevalence of campylobacters in chickens and the incidence of disease in humans. The prevalence of campylobacters in chickens peaked 1 month after the peak incidence of disease in humans and was not followed by an increased number of infections in humans.
Molecular typing identified 34 different PFGE patterns among the 41 chicken isolates analyzed, with an SC of 20.4%. Overall, 19 (46%) chicken isolates had a PFGE pattern similar to one or more of the PFGE patterns of 41 (22%) human isolates (Fig. 1). However, only six of these chicken isolates were isolated within 2 months before or during the same week as the five human isolates. Some form of chicken exposure was documented in each of these five patients, but chicken was the suspected source of infection in only two of them.
![]() View larger version (31K): [in a new window] |
FIG. 1. Dendrograms representing relatedness among PFGE profiles of KpnI digests of 41 human (001A prefix) and 19 chicken (001B prefix) isolates of C. jejuni.
|
|
View this table: [in a new window] |
TABLE 1. Number and size of clusters of Campylobacter isolates identified by PFGE by using different criteria
|
|
View this table: [in a new window] |
TABLE 2. Description of clusters identified by use of molecular typing (PFGE) and time criteria
|
For essentially all the remaining clusters that were defined by molecular typing and that met the time criteria, an epidemiological factor linking the cases could not be verified. The identification of common sources was difficult because most clusters included only two to three cases each and because no information for cases living outside the Eastern Townships was available.
Even during phase II, when molecular typing was performed in real time and related isolates were identified promptly, the clustered cases could not be linked to common sources by using the epidemiological data routinely collected. Additional investigations would have been necessary to confirm more speculative possibilities. Chicken consumption was often hypothesized as the source of infection, but this risk factor was poorly discriminatory since it was present in 89% of the cases and 93% of the controls in the case-control study.
Of note, some sets of isolates that were highly related by PFGE patterns (Table 1) were assigned to several different clusters on the basis of the time criteria (Table 2). For example, clusters 10, 20, and 24 occurred over 10 months and represented a single strain, as defined by PFGE. Similarly, clusters 13 and 25, which occurred approximately 1 year apart, represented a single strain (Fig. 1), which was also isolated from a chicken (strain 001B-35) during the period that the second cluster was identified. These observations suggest that there may be particular genotypes that could have a higher potential to cause outbreaks, either because of greater dissemination among sources such as water or domestic animals or because of increased virulence. Thus, the cases in cluster 13 may represent illnesses due to a single strain acquired from different sources (e.g., raw milk and chicken).
|
|
|---|
Hedberg et al. (7) evaluated the usefulness of molecular typing of all Campylobacter isolates submitted to the Minnesota Department of Health in 1994. A total of 673 isolates were grouped into 248 distinct PFGE patterns, 74% of which were represented by only 1 or 2 isolates each. Routine epidemiological methods identified two outbreaks and nine other case clusters involving 4% of all isolates. Use of PFGE revealed eight more temporal clusters involving 9% of all isolates. Cases that could not be linked with other cases by PFGE pattern, time, or geographic location accounted for 87% of the reported isolates. These results are consistent with our conclusion that molecular typing identifies relatively few additional cases representing potential common-source clusters. Perhaps more importantly, the observation that most clinical Campylobacter isolates represent unique genotypes suggests that there is little yield to using scarce public health resources to investigate sporadic cases.
Our study also indicated, as others have (2, 3, 6, 8, 9, 13), that humans and chickens can be infected by related genotypes of Campylobacter. Overall, the PFGE patterns of 19 (46%) of the chicken isolates matched those of 1 or more of the human isolates. However, a temporal association was demonstrated in only a minority of cases and the majority of genotypes causing clinical illness were never found among chicken isolates, suggesting that sources other than chickens make an important contribution to human campylobacteriosis.
Our results may have been influenced by several technical factors. The selective enrichment methods may have failed to recover strains with poor fitness in vitro. Since only a single isolate was analyzed per chicken, the presence of multiple different strains in individual animals may have been missed. Since our epidemiological surveillance was done on a regional basis, we had limited information for many case patients living outside the Eastern Townships. A provincial or national surveillance system might have identified additional clusters; however, typing and investigation of such a large number of isolates might be unwieldy.
The most efficient strategy for the surveillance and investigation of sporadic cases of campylobacteriosis remains undefined. Should molecular studies be reserved for case clusters putatively identified by epidemiological surveillance? Conversely, should all cases be analyzed first by molecular strain typing and then should the epidemiological investigation be directed only at genotypically related cases? Should small clusters of two to four cases be investigated at all, since the yield appears to be very low? Resolution of these questions will require a more comprehensive analysis of Campylobacter strains in all sources, including water (e.g., by less selective isolation methods and analysis of multiple isolates per sample), and by more precise and portable genotyping systems (e.g., multilocus sequence typing).
Financial support for this study was received from the Ministère de la Santé et des Services Sociaux du Québec, the Régie Régionale de la Santé et des Services Sociaux de l'Estrie, and the Centre de Recherche Clinique du Centre Hospitalier Universitaire de Sherbrooke.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»