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Journal of Clinical Microbiology, March 2005, p. 1112-1117, Vol. 43, No. 3
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.3.1112-1117.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Environmental Health Sciences,1 Department of International Health, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland,2 Institute of Nutrition of Central America and Panama, Guatemala City, Guatemala,3 Hospital del Nino de Morelense, Cuernavaca, Mexico,4 SBL Vaccin, Stockholm, Sweden5
Received 22 April 2004/ Returned for modification 20 August 2004/ Accepted 28 October 2004
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Noroviruses (NoVs) are recognized as one of the leading causes of nonbacterial gastroenteritis outbreaks in countries such as The Netherlands, the United Kingdom, and the United States (7, 9, 12). NoVs are estimated to cause over 23 million cases of illness each year in the United States (5, 15). The genus Norovirus is currently subdivided into five genogroups (GI through GV) on the basis of sequence homologies in the viral RNA, with GI and GII the most commonly described in human infections (2). Investigations of the extensive cruise ship gastroenteritis outbreaks that occurred between July and December 2002 exemplified the usefulness of molecular diagnostic techniques for determining the role of NoVs in outbreaks (5). However, since molecular detection methods for NoVs are not readily available in many laboratories in the United States or other countries, the role of NoVs in the etiology of TD remains unclear. In a previous study, the prevalence of NoV infection among travelers to Mexico was elucidated with antibodies to NoV in a solid-phase microtiter radioimmunoassay, suggesting that NoV was the etiologic agent in 15% of the TD cases studied (18). Yet, estimates of NoV prevalence based solely on serological data may be imprecise, since immunoassays may either detect persisting antibodies from a NoV infection that occurred prior to travel or fail to detect low levels of NoV-specific antibodies present during an acute infection (2). Current antigen detection enzyme-linked immunosorbent assays also are limited by inadequate cross-reactivity to the numerous NoV strains in circulation (2, 9). The purpose of this study was to utilize reverse transcription-PCR (RT-PCR) with NoV-specific primers and probes that are broadly reactive to numerous NoV strains as a sensitive molecular diagnostic technique to determine the prevalence of NoVs in TD occurring among United States visitors to Guatemala and Mexico.
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All study participants were requested to submit stool samples upon arrival in Guatemala or Mexico (acceptable range, 0 to 4 days in-country), at 1 week into their stay (acceptable range, 5 to 10 days in-country) and at the time of departure (generally 14 to 21 days after arrival; acceptable range, 11 to 23 days). Additional stool samples were collected from participants during acute diarrheal episodes. All samples were examined for the presence of classic bacterial and protozoal enteropathogens, including E. coli, Salmonella, Shigella, Campylobacter, Vibrio, Aeromonas, Plesiomonas, Giardia, Entamoeba, Cryptosporidium, and Cyclospora species, by standard culture, antigen detection, and microscopic methods (16). Up to five E. coli colonies from each stool sample were screened for ETEC by monoclonal antibody-based antigen detection assays for heat-labile and heat-stable toxins (24, 25). Stool suspensions from the 34 TD cases studied for NoV infection in this report were also screened for rotavirus infection by a commercially available antigen detection assay (Rotoclone; Meridian Diagnostics, Cincinnati, Ohio). All stool samples (10% suspensions in phosphate-buffered saline [PBS]) were cryopreserved at 70°C for additional viral analyses.
In addition to providing stool samples, study participants completed weekly diary cards designed to assess their daily health status during their stay in-country. The presence or absence of a number of general or gastrointestinal symptoms was recorded, as well as the number, time, and characteristics of all stools passed. Subjects also were interviewed twice a week to further assess their overall health status.
Optimization of NoV molecular diagnostic techniques. Molecular diagnostic techniques for NoVs were optimized with 20 different strains of NoV (10 GI and 10 GII) present in stool samples obtained from the Centers for Disease Control and Prevention (CDC). CDC stool samples were prepared as 10% suspensions in PBS, and diluted 10, 100, and 1,000 fold in sterilized, molecular-grade H2O (Nanopure Diamond water system; Barnstead, Dubuque, Iowa). A previously described method that employs heat to release viral RNA from the capsid protein was utilized (20). Briefly, 90-µl sample dilutions (102 and 103) were heated at 95°C for 5 min and chilled on ice for 2 min. If stool samples were inhibited at the 1,000-fold dilution, they were further processed by extracting NoV RNA from 50 µl of 10% stool by a standard guanidinium extraction, followed by phenol-chloroform purification and isopropanol precipitation (22). Viral RNA isolated by either heat release or extraction was immediately assayed for NoV in 50-µl reaction mixtures by single-enzyme, single-tube RT-PCR with an MJR Peltier Thermal Cycler (PTC-200; MJ Research, Inc., Cambridge, Mass.). The RT-PCR mixture yielded a final solution containing 1x EZ Buffer, 0.2 mM deoxynucleoside triphosphates, 0.6 µM upstream and downstream primers, 2.5 mM Mn(OAc)2, 10 U of Rnasin, 5 U of rTth (Perkin-Elmer, Foster City, Calif.), and 20 µl of each heat-released sample dilution or extracted RNA. The RT reaction mixture was incubated for 10 min at 50°C for downstream primer annealing and for 50 min at 60°C for RT. cDNA was subsequently amplified under the following conditions: initial denaturation for 2 min at 94°C; 40 cycles each consisting of template denaturation for 15 s at 92°C, primer annealing for 30 s at 50°C, and primer extension for 30 s at 60°C; and a final extension for 5 min at 60°C. Region B primers developed at the CDC were used to amplify NoV RNA with an expected PCR product size of 213 bp (Table 1) (1). All samples were processed in a dedicated sample preparation laboratory, and amplicons were analyzed in a dedicated post-PCR laboratory to reduce the risk of laboratory cross-contamination.
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TABLE 1. Primer and probe sequences for RT-PCR and Southern oligoprobe confirmation
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All NoV PCR products were confirmed by Southern hybridization oligoprobes. Six probes were utilized for GI, and six probes were utilized for GII (Table 1). GI and GII probes were 5'-end labeled with digoxigenin by using terminal transferase in accordance with the manufacturer's protocols (Roche Diagnostics Corporation, Indianapolis, Ind.). The GI probes were combined into one GI hybridization reaction mixture, and the GII probes were combined into one GII hybridization reaction mixture. Southern hybridization and detection were performed as previously described (21).
Laboratory and epidemiological analysis of TD stool samples. Fifty-four stool samples (10% PBS suspensions) from the 34 TD study participants were analyzed for NoVs utilizing the molecular techniques described above. All of the samples were coded; therefore, during the laboratory analysis the symptomatology of each individual and the status of each sample (i.e., true sample, positive control, and negative control) were not known by the laboratory personnel.
Among the 54 stool samples obtained from travelers, 15 were collected prior to the onset of TD, and the remaining 39 were collected during acute TD episodes (some participants provided more than one acute sample). Access to the 15 prediarrhea stool samples (all negative for NoVs) enabled the calculation of an overall NoV infection incidence rate for 15 TD cases (5 from Guatemala and 10 from Mexico). Analyses of the 39 acute diarrheal samples enabled the calculation of an overall NoV infection prevalence rate among all 34 study participants. In addition, incidence and prevalence rates were calculated for two categories of TD cases: (i) TD cases that met the definition of TD, in which no bacterial or parasitic pathogens were identified (n = 16 cases); and (ii) TD cases that were previously documented as ETEC infections (one of which was also rotavirus positive) (n = 18 cases).
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FIG. 1. RT-PCR (A) and Southern oligoprobe (B) results for a subset of NoV-positive stool samples obtained from the CDC. Each stool sample was analyzed separately with GI or GII primers and probes. Lanes 1 and 8, digoxigenin-labeled DNA marker; lanes 2 to 6 and 9 to 13, GI or GII NoV-positive stool samples, respectively; lanes 7 and 14, GI and GII negative controls, respectively.
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FIG. 2. RT-PCR (A) and Southern oligoprobe (B) results for a representative subset of TD samples. Each stool sample was analyzed separately with GI or GII primers and probes. Lanes 1 and 15, digoxigenin-labeled DNA marker; lanes 2 to 9 and 16 to 23, GI and GII 103 dilutions of heat- released RNA amplifications of TD stool samples, respectively; lanes 10 and 24, GI and GII negative controls, respectively; lanes 11 and 25, PV amplicons; lanes 12 and 26, HAV amplicons; lanes 13 and 27, space; lanes 14 and 28, GI and GII positive controls, respectively.
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TABLE 2. NoV infection among travelers from the United States experiencing an episode of traveler's diarrhea while visiting Mexico or Guatemala for 14 to 24 days
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7 days), the prevalence of NoV infections rose rapidly to over 66% (
2 = 9.13; P = 0.003). In addition, most NoV-positive stools were from subjects with TD or a recent history of a TD episode. Of the 22 stools collected from subjects during their first 6 days in-country, 5 stools were NoV positive, and 4 of these were from subjects with TD; among the 21 NoV-positive stools collected from subjects after longer periods in-country, 20 were from subjects that were symptomatic at the time of submittal or had a history of recent TD. |
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TABLE 3. NoV infection among travelers to Mexico and Guatemala: influence of time spent at travel destination on frequency of infectiona
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TABLE 4. Clinical characteristics of traveler's diarrhea cases with NoV present as either the sole etiologic agent or a copathogen with ETEC
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Although NoV has been previously implicated as a cause of TD in Mexico (18), this is the first report indicating that NoV also contributes to TD occurring among visitors to Guatemala. In both settings, the frequency of NoV infection increased sharply as subjects spent more time in-country (Table 3). While our study population was relatively small, the infection rate among travelers to Mexico also appears to be higher than previous reports (18). The difference may reflect the greater sensitivity of the RT-PCR diagnostic methods utilized in this study compared to the radioimmunoassay used in the previous study.
Another interesting finding in this study is that all NoV-positive TD samples were positive for GI; no TD samples were positive for GII. In the 1990s, GII was the predominant strain type identified in outbreaks worldwide (10, 13, 14). However, Fankhauser et al. (9) reported that the number of GI strains detected in outbreaks increased from 4% in 1996 to 1997 to 26% between 1997 to 2000. The authors proposed that this increase in GI detection may be due in part to the use of region B primers (the primers used in this study) which are more efficient in detecting GI strains previously missed with other primer sets (9).
We are confident that detecting only GI NoV-positive samples among the TD samples tested was not the result of ineffective GII primers or probes. During the optimization of our molecular techniques with CDC stools, NoV stools previously known to be positive for GII were confirmed positive with both RT-PCR gels and Southern blots (Fig. 1). Moreover, urban stream samples and outbreak samples collected from the mid-Atlantic region of the United States that are currently being analyzed for NoVs in our laboratory are predominantly positive for GII NoVs (data not shown). One potential explanation for why we detected only GI strains in this study while GII strains are believed to be more prevalent is that GI NoVs may be from different genotypes in developing versus developed countries whereas GII NoVs could be of the same genotypes, resulting in international travelers more likely to be infected with GI strains. The nature of NoVs prevalent in developing countries is an issue that is worthy of additional research.
The simple molecular detection method utilized in this study is particularly attractive in terms of furthering NoV-related research in developing countries such as Guatamala and Mexico. The heat release viral RNA extraction procedure only requires a heat block and a timer. Expensive, toxic reagents such as guanadinium-based extraction solutions and phenol are not required. Moreover, to identify potential false negatives caused by interfering substances that remain in diluted stool samples, a previously described NVIS control can be utilized in conjunction with the heat release method (20). Our results indicate that a majority of inhibitors present in stool samples can be eliminated by 100- to 1,000-fold dilutions of a 10% stool suspension, especially if the original stool sample is very loose or watery (the condition of most stool samples obtained from individuals with TD). Inhibition can occur at a higher frequency in formed stools from uninfected individuals. However, the few samples that remain inhibited can be reanalyzed following additional sample processing.
As an added precaution, separate RT-PCRs also were performed in this study for NoV GI, NoV GII, and NVIS instead of utilizing a multiplex reaction with GI, GII, and NVIS primers. In multiplex reactions, competition can occur where controls such as NVIS (which may be present in concentrations higher than that of the NoV within the environmental sample) can usurp the RT-PCR reagents, resulting in little to no amplification of NoV and false-negative results (21). Separate NVIS and NoV reaction mixtures eliminate this potential problem.
In addition to utilizing controls such as NVIS to detect sample inhibition during viral detection procedures, the results of this study reaffirm that it is crucial to confirm RT-PCR gel results by internal probing. Previous studies have shown that visual interpretation of gels alone leads to errors in interpreting the presence or absence of viral nucleic acids in environmental samples (3, 21). Figure 2 exemplifies the importance of not relying solely on gel results for the detection of viral agents. For instance, in Fig. 2, lanes 6 and 7, few to no definitive bands appeared on the GI gel; however, Southern probing indicated that the samples were NoV positive. Conversely, in Fig. 2, lanes 5 and 9, faint bands in the GI gel that are approximately the same size as a region B GI amplicon appeared. Yet, upon Southern probing, the amplicons associated with these bands did not hybridize to NoV-specific probes, indicating that the bands perceived on the gel were nonspecific.
In this study, Southern probing for GI and GII NoVs was performed using six probes in combined hybridization reactions for each genogroup; therefore, hybridization was utilized as a confirmation tool and not as a genotyping tool. For the treatment of NoV-associated gastroenteritis, physicians only need to know whether NoVs are present. They do not need to know which NoV strain caused the illness. However, reverse line blot methods of probing may be effective alternative methods that not only confirm NoV amplicons but also enable the identification of specific strains (26). Strain identification is useful in outbreak investigations where strain information can help to identify the source and/or patterns of the outbreak. The development of reverse line blot methods is ongoing in our laboratory.
In summation, NoVs are known to be a major cause of nonbacterial gastroenteritis outbreaks occurring in both domestic settings and unique travel settings such as cruise ships (5, 9, 15). The role of NoVs also has been well documented in outbreaks among small military groups going ashore for short periods of time in conjunction with naval deployment overseas (17). Yet, this study is the first of its kind to indicate that NoVs may be a major cause of illness among United States travelers who experience TD during extended stays in developing countries. The results also document concurrent NoV and bacterial infections in one-third of the cases studied, highlighting the polymicrobial nature of TD illness and suggesting that NoVs complicate both the clinical management of TD and the interpretation of vaccine and other intervention studies that may be ongoing in at-risk populations. The high frequency of NoV infection among TD cases examined in this study suggests that further investigations concerning the role of these viruses in TD are warranted. More in-depth studies regarding the role of this agent in TD will be facilitated by the application of the simplified detection methods described here in both United States and oversea laboratories.
We also extend thanks to Ann-Mari Svennerholm of the University of Göteborg, Göteborg, Sweden, for her generous efforts to determine the frequency of ETEC infections among subjects participating in this study; Robert Atmar, Baylor College of Medicine, Houston, Tex., for a constructive review and comments; and Stephan Monroe, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, Atlanta, Ga., for supplying positive control NoV stool samples as well as a constructive review and comments.
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