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Journal of Clinical Microbiology, March 2005, p. 1278-1284, Vol. 43, No. 3
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.3.1278-1284.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Departamento de Biología Funcional-Microbiología, Universidad de Oviedo, Oviedo,1 Laboratorio Interprofesional Lechero y Agroalimentario de Asturias (LILA), Llanera,2 Instituto de Productos Lácteos de Asturias (CSIC), Villaviciosa, Asturias, Spain3
Received 21 July 2004/ Returned for modification 5 September 2004/ Accepted 17 October 2004
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Saß-1), and another contained seh (together with lukED). The isolates were also analyzed by pulsed-field gel electrophoresis performed with SmaI. Thirty-nine SmaI profiles (similarity coefficient [S] = 0.94 to 0.21) were differentiated; 12, 1, and 10 of these, respectively, were generated by isolates presumptively carrying Saß-1, SaPIbov, or both. Five SmaI profiles (S
0.8) formed a cluster, which contained 20 and 10 isolates carrying one (
Saß-1) or both islands. These data show the high frequency of genes encoding cytotoxins and pyrogenic toxin superantigens, their relationship with pathogenicity islands, and their distribution among a diversity of genetic types of S. aureus related to subclinical mastitis. |
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-, ß-,
-,
-variant, and
-hemolysins; nucleases; lipases; hyaluronidase; and collagenase) whose main functions are to convert local host tissues into nutrients required for bacterial growth and also to promote spreading of the pathogen through the host body. Some isolates secrete one or more additional toxins, comprising leukotoxins (Luk) and pyrogenic toxin superantigens (PTSAgs), such as toxic shock syndrome toxin 1 (TSST-1), staphylococcal enterotoxins (SEs), and exfoliative toxins. PTSAgs have profound effects on the host immune system, both acute and long term. The former include food poisoning, caused by ingestion of SEs. Superantigens are thought to act as virulence factors by subverting immune responses and causing delays in the establishment of pathogen-specific immunity (1, 7, 16, 24, 27, 30, 34).
-Hemolysin and leukotoxins (the classical Panton-Valentine [PVL], or LukS-PV-LukF-PV, and the new LukE-LukD and LukM-LukF'/PV) are two component toxins that kill erythrocytes and/or phagocytes by forming pores in cell membranes (7, 27, 30).
Sequencing of complete or partial genomes from several S. aureus strains (3, 10, 14, 15, 17) has revealed the clustering of some exotoxin genes (encoding leukotoxins, TSST-1, and SEs) within chromosomal pathogenicity islands (SaPI or
Sa) and that a single strain can carry more than one SaPI (3, 15, 29). One exotoxin gene cluster (egc) includes five SE genes [seg, sei, seo, sen, sem] and two pseudogenes (14) and was later identified in the genome of clinical strains as part of a genomic island, here called
Saß-1 (3, 15, 29). More recently, an egc derivative encoding SEG, SEI, and SEN variants and the new SEU (which resulted from the insertion of 15 bp within one of the pseudogenes) has been identified (17).
S. aureus is recognized worldwide as a pathogen causing intramammary infections (mastitis) in cattle. Both leukotoxins and PTSAgs are supposed to play important roles in the initiation and/or exacerbation of mastitis (7, 27, 30). In addition, it has been proved that S. aureus is able to colonize milk and dairy products, in which some strains secrete toxins, including thermoresistant SEs. When foods contaminated with SEs are ingested, they can cause poisoning in humans, with fever, vomiting, nausea, abdominal pain, and diarrhea as the most frequent symptoms. In fact, the classical SEs (SEA to SEE), initially identified as serological types, were defined by their pyrogenic and emetic activities and only later categorized as superantigens. More recently, new SE types (SEG to SER and SEU) have been identified on the basis of sequence and structural similarities to previously described SEs, and there is also experimental evidence for their superantigenic activity, but rarely for emetic activity (1, 7, 9, 14, 16, 17, 26).
To date, there is limited information about the prevalence of the recently identified toxin and exotoxin genes, including those encoding new leukotoxins and SEs, in S. aureus associated with infectious diseases in animals and human food poisoning. Taking this into account, the purposes of the present study were (i) to ascertain the frequency of genes encoding hemolysins (hla, hlb, hld, hlg, and hlg-2), leukotoxins (lukS-PV/lukF-PV, lukM, and lukE-lukD), TSST-1 (tst), and SEs (sea to see, seg to ser, and seu) in a set of 84 isolates of S. aureus collected from the milk of cows with subclinical mastitis in Asturias, a cattle region of Spain; (ii) to group the isolates according to exotoxin genotypes (EGs) and to establish possible gene clusters and their association with SaPIs; (iii) to discriminate isolates into genomic types defined by macrorestriction-pulsed-field gel electrophoresis (PFGE) performed with SmaI and cluster analysis, by which means we aimed to determine the most frequent genomic types with the potential for colonizing cow mammary glands and cow milk; and (iv) to correlate EGs and SaPIs with genomic types, thus tracing the dispersion of genes associated and not associated with SaPIs among genomic types.
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10,565 km2 and has ca. 4,700 dairy cattle herds, each including between 4 and 200 cows. For the control of mastitis, recounts of somatic cells in pooled milk samples from each herd are routinely performed four times per month using a Fossomatic 5000 autoanalyzer (FOSS A/S, Hillerød, Denmark). Mastitis is suspected when counts of
250,000 cells/ml are obtained and a decrease in milk production and/or moderate inflammation of the udder is observed. Milk samples from each cow of a suspected herd are independently assayed by the California Mastitis Test using commercial kits (ImmuCell, Portland, Maine, or Westfalia-Surge Inc., Naperville, Ill.). The results are visually scored on the basis of gel formation. Trace and weak-positive reactions are taken as indicators of subclinical mastitis. Infection is confirmed on the basis of elevated white cell numbers in the milk sample (>400,000 leukocytes/ml) and/or decrease in milk quality and isolation of pathogenic bacteria. For isolation of S. aureus, 20 µl of milk were spread and incubated at 37°C for 24 h on plates of Columbia blood agar (bioMérieux S.A., Marcy-l'Etoile, France). Identification of presumptive S. aureus colonies was carried out by the following assays: Gram staining, coagulase production (the Staphylase test) and thermonuclease production on DNase medium (both from Oxoid Diagnostic Reagents, Basingstoke, United Kingdom), and hemolytic activity on Columbia blood agar. They were also biochemically identified by the API Staph system (bioMérieux S.A). In addition, the 84 S. aureus isolates were tested for production of five classical PTSAgs by reverse passive latex agglutination using the TST-RPLA kit for TSST-1 and the SET-RPLA kit for SEA to SED (Oxoid Diagnostic Reagents). Six strains, each the prototype of a specific toxin (see Table 2), were used as controls in different experiments. |
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TABLE 2. Exotoxin genotypes of S. aureus control strains
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Macrorestriction-PFGE analysis. Total DNA from each S. aureus isolate was analyzed by macrorestriction-PFGE performed with SmaI by means of the CHEF-DRIII SYS220/240 (Bio-Rad Laboratories S.A., Madrid, Spain), basically using the consensus protocol (22). SmaI banding profiles were visually analyzed, and the presence or absence of each band was recorded. Those showing one or more mismatched bands were considered different and numbered as S80 to S92 (isolates containing PTSAg genes) and S101 to S125 (isolates without PTSAg genes). S1 to S79 have been used in our laboratory to label SmaI profiles generated by S. aureus from other origins. Relationships between SmaI profiles were established on the basis of the number of mismatched bands (22, 33), and the genetic similarity was determined by the unweighted pair method with arithmetic averages and Jaccard's similarity coefficient (S) in the software Program MVSP version 3.1 (Multivariate Statistics Package for PCs; RockWare Inc.). The discrimination index (DI) (i.e., the probability that two unrelated isolates obtained from the population would be placed into different SmaI profiles) was calculated using Simpson's index of diversity (31).
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TABLE 1. Exotoxin genotypes and macrorestriction genomic profiles of S. aureus collected from milk samples from cows with subclinical mastitis
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FIG. 1. Screening of exotoxin genes by multiplex PCR in representative S. aureus isolates associated with subclinical mastitis. Lanes M, lambda ladder PFGE markers (New England Biolabs). Lanes 1 to 15, amplicon profiles generated by mastitis isolates using the primer sets indicated at the top. Lane 16, amplicon generated using the sek primers. Each amplicon profile was included in different EGs (Table 1).
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FIG. 2. Macrorestriction genomic profiles generated by SmaI in S. aureus control strains and isolates associated with subclinical mastitis. Lanes MW, lambda ladder PFGE markers (New England Biolabs). Lane NCTC 8325, quality control strain in PFGE assays. Fragment sizes from top to bottom in (kilobases) are 674, 361, 324, 262, 257, 175, 135, 117, 80, 60 and <60 (the 208-kb fragment present in the PFGE profile shown in reference 20 is lacking). NCTC 8325 was also used as a LukE-LukD prototype and an SE-TSST negative control. The next five lanes show the SmaI profiles generated by the prototype strains of PVL (CECT 59), TSST-1 (CNM 3194/98), SEA and SED (CECT 976), SEB (CECT 4459), and SEC (CECT 4465), respectively. Lanes S80 to S92 and S101 to S125 correspond to profiles generated by isolates positive and negative, respectively, for PTSAg genes (except S92, which includes both types). The relationships between EGs and SmaI profiles are compiled in Table 1.
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6 mismatched fragments), represented by PTSAg isolates belonging to three genotypes: EG1 ([tst, sec, sel] and egc-2; 10 isolates), EG2 (egc-2; 18 isolates), and EG3 (egc-1; 1 isolate). In contrast, only two profiles (S88 and S90) represented by egc-1-containing genotypes (EG8 and EG7, respectively) fell within C1. In addition, PTSAg isolates were also assigned to several nonclustered SmaI profiles (at the established cutoff point; see above). Thus, profiles S85, S86, and S93 were represented by the single EG6, EG4, and EG9 isolates, respectively. Four other profiles (S87, S89, S91, and S92) were generated from isolates containing egc-1 (EG7) or egc-2 (EG2) and by one egc-negative isolate (EG10; S92) (Table 1). The remaining 25 profiles (S101 to S125) were represented by 43 isolates that were negative for PTSAg genes, assigned to six EGs (EG5 and EG10 to -14). They showed high genetic heterogeneity (S = 0.88 to 0.21) (Fig. 3), although some of them could be grouped into five additional clusters (C3 to C7).
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FIG. 3. Dendrogram showing genetic relatedness among SmaI macrorestriction fragment profiles generated from S. aureus. Cluster analysis was performed by the Jaccard similarity coefficient and the unweighted pair group method. Branches CECT 59, CECT 976, CECT 4459, CECT 4465, CNM 3194, and NTCC 8325 correspond to exotoxin prototype strains (Table 2). Branches S80 to S92 and S101 to S125, respectively, correspond to isolates associated with subclinical mastitis that were positive and negative for PTSAg genes (except S92, which includes both). At a cutoff point of S = 0.7, seven clusters (labeled C1 to C7) and 24 branches (6 corresponding to the prototype strains) were found. EG, exotoxin genotypes of isolates associated with subclinical mastitis. The numbers of isolates falling into each cluster and branch are compiled in Table 1.
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Our data on the frequency of hemolysin and leukotoxin genes are in agreement with those reported by Rainard et al. (27) showing that all isolates analyzed from a collection of S. aureus recovered from ruminants with mastitis harbored at least the genes for
-hemolysin and LukE-LukD. However, they differ from those of another study (30) with isolates causing clinical and subclinical mastitis in which only 55 and 41%, respectively, produced leukotoxins. With regard to PTSAg genes, seb and seh were each found in one isolate, while the remaining genes had a wider distribution and appeared in three different clusters: [tst, sec, sel], egc-1, and egc-2, found in 13.1, 7.1, and 38.1% of the isolates, respectively. The presence of nine PTSAg genes encoding two classical (TSST-1 and SEC) and seven new (SEL, SEG, SEI, SEM, SEN, SEO, and SEU) superantigens in 11.9% of the isolates is noteworthy. However, a correlation of the number of PTSAg genes with the severity of mastitis has not been recorded. The classical PTSAgs found in S. aureus isolates from Asturias (SEB and TSST-1-SEC) coincided with those reported for mastitis isolates collected in Ireland, the United States, and Japan (9, 23). However, they differed from data available for Italian and Korean mastitis isolates, where SED or SEA, respectively, were the most frequent toxins (5, 18), and for isolates recovered in Brazil, 65% of which produced one or several toxins but only 3.2% of which produced TSST-1-SEC (4). In the present study, classical and new se genes were found in 12 versus 40 isolates, respectively (ca. 1:3 proportion), and similar or even greater differences have been reported in previous screenings of isolates from a different origin in which some of the new se genes were included (14, 21, 25, 26, 28). This is notable, since it has been recently reported that there are large gaps in the capacity of human serum samples to neutralize S. aureus PTSAgs and that the egc-encoded superantigens are neutralized by human sera much less efficiently than classical PTSAgs (12). It is also notable that, in the present work, only 6 out of 38 isolates found to contain egc clusters (15.8%) were seu negative, while the remaining 32 (84.2%) were seu positive. Thus, in our series, the incidence of egc including the seu gene (i.e., egc-2) was much higher than that previously reported: 16.6% (17). Discrepancies between results from different countries as to the frequency of leukotoxin genes, PTSAg genes, and egc are not unexpected, since (i) these genes are associated with mobile (and therefore variable) genetic elements, including SaPIs, plasmids, and phages; (ii) different strains could have gained, and maintained over time, a variable number of such elements; (iii) in agreement with the previous points, dairy cows from different geographic areas could have been colonized by strains with different virulence genotypes; and (iv) all or some of these strains, under certain conditions, may be able to invade the skin and mucous membranes of the host, causing severe illness.
When the gene clusters found in this study were compared with information available in the literature, the following noteworthy observations were made. (i) Clustering of tst, sec, and sel genes (here reported in 13.1% of the isolates) was initially described in SaPIbov (
Sa2), a genomic island found in S. aureus of bovine origin (10). However, this gene association is also present in several islands (SaPIn1/SaPIm1 and SaPIn3/SaPIm3, belonging to the
Sa2 and
Sa4 families) that were identified in the genomes of human isolates (3, 15, 24, 29). (ii) Sequencing of the complete genome of S. aureus NCTC 8325 (here included as a control strain) and of human methicillin-resistant isolates revealed the presence of lukED in two chromosomal islands:
Saß-1, which also carries egc-1, and
Saß-2 (3, 29). Experimental data reported in this work support the presence of
Saß-1 in six milk isolates and suggest the existence of a
Sa variant, harboring egc-2 instead of egc-1, in 32 seu-positive isolates. Our results also suggest the presence of
Saß-2, or another element containing lukED, in all but one of the PTSAg-negative isolates.
PFGE-macrorestriction analysis has been reported as the "gold standard" method for typing bacteria. In fact, the procedure has already been used to discriminate S. aureus isolates from different human, animal, and food samples (6, 18, 21-23, 32, 33). In this work, an SmaI-PFGE procedure, previously harmonized for typing methicillin-resistant S. aureus isolates (22), was applied to type the 84 mastitis isolates. In this way, they were discriminated into 39 SmaI genomic profiles, which showed broad genetic heterogeneity (S = 0.94 to 0.21). The 44 isolates containing PTSAg genes generated 16 SmaI profiles, only one of which (S92) also contained a non-PTSAg isolate. It is noticeable that five SmaI profiles formed a cluster (C2; S
0.80) that included 38.1% of the isolates presumably carrying the
Saß-1 variant, and some of them also carried SaPIbov. Accordingly, a wide variety of genomic types of toxigenic S. aureus could be part of the normal microbiota of cows and also be involved in bovine subclinical mastitis in Asturias. Mastitis (clinical and subclinical) generates important losses in dairy industries in the region and, as previously indicated, can be regarded as a risk factor for food poisoning in humans.
Typing results, together with the possible clustering of PTSAg and leukotoxin genes within
Saß-1 islands (which harbor transposase genes, indicating that transposons may have been the origin of these islands) (3, 15, 29), support the following hypotheses. (i) Horizontal transmission of the island(s) among strains of different origin; in fact, subclinical mastitis isolates generating highly different macrorestriction genomic profiles (S = 0.2 to 0.9) contained seven or eight genes associated with Saß-1 islands. A similar situation was found in S. aureus isolates from healthy human carriers analyzed in our laboratory (unpublished results). Notably, egc-1 or egc-2 was identified in a high proportion of the human isolates, which included producers and nonproducers of classical PTSAgs. However, none of the isolates displayed a PTSAg gene profile consistent with SaPIbov (references 11 and 21 and unpublished data). A wide distribution of egc (or its associated seg-sei genes) has also been reported for human and food-borne S. aureus isolates in other works (12, 14, 21, 25, 28). (ii) Clustering of leukotoxin and superantigen genes may be beneficial for S. aureus when colonizing and/or invading human and animal tissues and organs, apart from their involvement in disease (14). The same is expected for the insertion of different SaPIs into the genome of a single strain. The fact that 45 and 11.9% of our subclinical mastitis isolates, respectively, contained genes associated with Saß-1 (without excluding the concomitant presence of Saß-2) and with
Saß-1 together with SaPIbov is then relevant. (iii) Theoretically, the accumulation of se genes in a single strain could be related to the amount of SEs secreted in foods and therefore to the severity of food poisoning. It should be remembered that SEs act not only as superantigens but also as potent gastrointestinal toxins and that these functions are located in two separate domains (1, 7, 16). Finally, the high frequency of egc clusters, or their associated seg-sei genes, highlights the requirement in prospective or future studies of food poisoning caused by S. aureus to screen the highest possible number of SEs, or their se genes, including egc genes. For this, multiplex PCR could be an accurate and relatively simple procedure.
In this context, it should be borne in mind that the screening of a large number of gene sequences and isolates by conventional PCR is more time-consuming and expensive than multiplex PCR. In the present work, the screening of 27 exotoxin genes at least twice in 84 subclinical mastitis isolates plus six control strains required >5,000 conventional PCRs. The same analysis was performed with less than half the number of multiplex reactions. Therefore, the latter option represents an important saving in time and resources. However, future screenings would require an improvement of the multiplex PCR protocols reported here in order to reduce the number of reactions and to limit false-negative results (here detected by comparison with the results of conventional PCR). For this purpose, the design and evaluation of new primers and primer combinations would allow the simultaneous and reliable screening of a higher number of genes. In fact, multiplex PCR using more than four primer pairs has been successfully achieved in previous work related to the subject (19-21), although the number of screened genes was always lower than that of the present study. Finally, it is also important to ascertain the reasons for failure of sek amplification when attempted in conjunction with that of other genes.
In conclusion, the following findings in relation to the aims of this study can be highlighted. (i) Nearly all S. aureus isolates related to subclinical bovine mastitis carried genes encoding hemolysins and leukotoxins, but only half of them carried genes encoding PTSAgs. In total, the exotoxin genes could be grouped into 14 profiles, or EGs. (ii) Most of the PTSAg genes were located on two pathogenicity islands (SaPIbov and
Saß-1), which appeared either alone or coexisting in the same isolate. (iii) SaPIbov was mainly associated with organisms falling into one SmaI cluster, whereas
Saß-1 appeared to be dispersed in this cluster, as well as in other clustered and nonclustered isolates, showing it to be a highly ubiquitous element. (iv) A wide variety of genomic types of toxigenic S. aureus could be regarded as both possible causal agents of clinical disease and risk factors for food poisoning.
This work was supported by a grant from the "Fondo de Investigación Sanitaria" (PI020172).
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