TABLE 2. Identification of human isolates of Pasteurella by sequencing the sodAint fragment
| Species and straina |
Origin |
Bacterial species (% identity)b |
sodAint GenBank accession no. |
|
| P. aerogenes |
|
|
|
| CNP 188 |
Pig bite wound |
P. aerogenes (99.9) |
AY702519 |
| CNP 266 |
Wound |
P. aerogenes (98.9) |
AY702520 |
| P. bettyae |
|
|
|
| CNP 736 |
Urine |
P. bettyae (100) |
AY702521 |
| CNP 1055 |
Gastric aspirate, neonate |
P. bettyae (100) |
AY702522 |
| CNP 1147 |
Urethral discharge |
P. bettyae (100) |
AY702523 |
| P. caballi CNP 1019 |
Horse bite wound |
P. caballi (99.8) |
AY702524 |
| P. canis |
|
|
|
| CNP 862 |
Wound |
P. canis (98.5) |
AY702525 |
| CNP 888 |
Dog bite wound |
P. canis (99.1) |
AY702526 |
| CNP 1024 |
Cat bite wound |
P. canis (97.6) |
AY702527 |
| CNP 1049 |
Wound |
P. canis (98.9) |
AY702528 |
| CNP 1166 |
Synovial fluid |
P. canis (99.1) |
AY702529 |
| P. dagmatis |
|
|
|
| CNP 811 |
Dog bite wound |
P. dagmatis (98.7) |
AY702530 |
| CNP 997 |
Dog bite wound |
P. dagmatis (98.7) |
AY702531 |
| CNP 1044 |
Middle ear fluid |
P. dagmatis (99.3) |
AY702532 |
| RSP 704 |
Tracheal aspirate |
P. dagmatis (99.3) |
AY702533 |
| RSP 708 |
Blood |
P. dagmatis (98.5) |
AY702534 |
| RSP 748 |
Wound |
P. dagmatis (98.0) |
AY702535 |
| P. multocida subsp. gallicida CNP 982 |
Sputum |
P. multocida subsp. gallicida (100) |
AY702536 |
| P. multocida subsp. multocida |
|
|
|
| CNP 927 |
Cat bite wound |
P. multocida subsp. multocida (99.6) |
AY702537 |
| CNP 954 |
Blood |
P. multocida subsp. multocida (99.6) |
AY702538 |
| CNP 978 |
Middle ear fluid |
P. multocida subsp. septica (100)c |
AY702539 |
| CNP 987 |
Cerebrospinal fluid |
P. multocida subsp. multocida (99.6) |
AY702540 |
| P. multocida subsp. septica |
|
|
|
| CNP 993 |
Cat bite wound |
P. multocida septica (100) |
AY702545 |
| CNP 1246 |
Cat bite wound |
P. multocida septica (100) |
AY702546 |
| P. pneumotropica |
|
|
|
| CNP 728 |
Rat bite wound |
P. pneumotropica (92.0) |
AY702541 |
| CNP 799 |
Tracheal aspirate |
P. pneumotropica (91.9) |
AY702542 |
| CNP 968 |
Wound |
P. pneumotropica (92.0) |
AY702543 |
| RSP 877 |
Guinea pig bite wound |
P. pneumotropica (91.8) |
AY702544 |
| P. stomatis |
|
|
|
| CNP 674 |
Wound |
P. stomatis (99.3) |
AY702547 |
| CNP 1172 |
Dog bite wound |
P. stomatis (99.6) |
AY702548 |
| P. trehalosi CNP 979 |
Goat bite wound |
P. trehalosi (98.9) |
AY702549 |
| P. haemolytica |
|
|
|
| CNP 531 |
Sputum |
Gallibacterium anatis (99.1)d |
AY702550 |
| CNP A177 |
Wound |
Mannheimia haemolytica (99.8) |
AY702551 |
|
a All isolates were obtained from human clinical specimens. Collection and identification by using conventional microbiological tests were performed by the Centre National des Pasteurella (CNP) (1988 to 1997) and the Réseau de Surveillance des Pasteurella (RSP) (2001 to 2004).
b Species identification based on the phylogenetic position of the sodAint sequence of the isolate relative to those of the type strains. The numbers in parentheses indicate the percentages of identity of the sodAint sequences with those of the corresponding type strains.
c 97.8% sodAint identity with the P. multocida subsp. multocida type strain.
d 74.8% sodAint identity with the M. haemolytica type strain.
