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Journal of Clinical Microbiology, July 2005, p. 3237-3243, Vol. 43, No. 7
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.7.3237-3243.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Pediatrics,1 Microbiology Section, Department of Medical Research,3 Division of Infectious Diseases, Department of Medicine, Mackay Memorial Hospital, Taipei, Taiwan,4 Taipei Medical University, Taipei, Taiwan,2 Mackay Medicine Nursing and Management College, Taipei, Taiwan,5 National Taipei College of Nursing, Taipei, Taiwan6
Received 5 October 2004/ Returned for modification 3 December 2004/ Accepted 9 March 2005
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Extended-spectrum cephalosporins, especially ceftriaxone, are commonly used to treat children with invasive infections or severe diarrhea caused by Salmonella enterica (19). In recent years, however, ceftriaxone-resistant Salmonella in humans as well as animals has frequently been reported worldwide, including reports from the United States, Europe, South America, Asia, and Russia (3, 7, 9, 12, 13, 17, 21, 26, 32-34, 36-38). In Taiwan, a high percentage of Salmonella isolates have been resistant to ampicillin, chloramphenicol, tetracycline, and trimethoprim-sulfamethoxazole since the 1990s (18, 22, 31, 40, 41). In addition, fluoroquinolone resistance emerged in 2000 (10). Ceftriaxone-resistant Salmonella, however, was not reported in the literature until 2001 (31).
The expression of a plasmid-mediated blaCMY-2 gene has been responsible for most ceftriaxone resistance in Salmonella spp. (7, 9, 12, 13, 15, 17, 36-38). This gene was first identified in a multiresistant S. enterica serovar Senftenberg strain isolated in 1994 (21). The blaCMY-2 gene encodes an AmpC-type ß-lactamase and was first described as being carried by a plasmid in a cefoxitin-resistant Klebsiella pneumoniae strain isolated in 1990 (2). In Taiwan, this gene was first detected in Escherichia coli isolates collected in 1999 (39). Since then, it has been reported to be carried by various ceftriaxone-resistant Salmonella strains (9, 37, 38).
In contrast to CMY-2, the CTX-M-type ß-lactamases have rarely been reported as present in ceftriaxone-resistant Salmonella strains. However, many strains that were originally identified as cefotaxime resistant because of the production of CTX-M-type ß-lactamases (e.g., CTX-M-2, CTX-M-5, and CTX-M-9) have been found to be ceftriaxone resistant as well (3, 5, 26, 28, 33), and a ceftriaxone-resistant S. enterica serovar Anatum strain carrying the blaCTX-M-3 gene on a plasmid was isolated in Taiwan (32).
The horizontal gene transfer and interspecies spread of the blaCMY-2 gene carried by a plasmid were reported for S. enterica serovar Hadar and E. coli (37); they have also been suggested to occur among Salmonella, E. coli, and K. pneumoniae isolates (38). The in vivo acquisition of plasmids carrying the blaCTX-M-3 gene by originally susceptible isolates was reported for S. enterica serovar Anatum and E. coli (32). These data suggest the likelihood and ease of spread of the determinants of ceftriaxone resistance.
In our hospital, we have isolated ceftriaxone-resistant Salmonella strains in the clinical microbiology laboratory since 1999. For this study, we investigated the mechanisms of resistance in a sample of these organisms isolated between January 1999 and December 2002.
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Susceptibility testing. MICs were determined by the agar dilution method (25). The antimicrobial agents tested included ampicillin, cefotaxime, ceftazidime, ceftriaxone, cefepime, imipenem, piperacillin-tazobactam, minocycline, ciprofloxacin, trimethoprim-sulfamethoxazole, and chloramphenicol. E. coli ATCC 25922 and Pseudomonas aeruginosa ATCC 27853 were used as reference strains.
IEF of ß-lactamase. Crude cell homogenates for the detection of ß-lactamases were prepared from fresh overnight cultures by sonication (34). The cell extracts were subjected to isoelectric focusing (IEF) as described by Matthew et al. (24) by use of a PhastSystem apparatus (Amersham Biosciences Ltd., Taipei, Taiwan) and Phastgels with a pH range of 3 to 9. ß-Lactamase activity was detected by using 0.5 mM nitrocefin in 0.01 M phosphate buffer as the substrate.
Pulsed-field gel electrophoresis (PFGE) of genomic DNA. Genomic DNA was prepared in 0.5% SeaPlaque GTG agarose (FMC BioProducts, Rockland, Maine) as previously described (35) and incubated at 37°C for 4 h with 20 units of NotI (BioLabs, Beverly, Mass.) in enzyme buffer. The digested DNA fragments were separated in a 1% SeaKem GTG agarose gel (FMC BioProducts) on a CHEF-DRII apparatus (Bio-Rad Laboratories, Hercules, Calif.). Electrophoresis was performed with 0.5x Tris-borate-EDTA buffer at 6 V/cm at 14°C. The run time was 20 h, with the pulse time increasing from 5 to 9 s. DNA fragments were then visualized with ethidium bromide. A lambda DNA ladder (Amersham Biosciences Ltd.) was used as the molecular size marker.
Plasmid DNA preparation. Plasmid DNA was purified by a modified alkaline lysis method as described by Sinnett et al. (29). An overnight culture of 3 ml in Luria broth (LB) was resuspended in 100 µl of chilled solution I (25 mM Tris-HCl, 50 mM glucose, 10 mM EDTA, pH 8.0, 2.5 mg/ml lysozyme, and 100 µg/ml RNase A), followed by 200 µl of solution II (0.2 N NaOH and 1% sodium N-lauroylsarcosine) and then 150 µl of solution III (5 M potassium acetate, pH 4.8). After centrifugation, the DNA in the supernatant was precipitated with ethanol, washed, and dried. The DNA was then resuspended in 100 µl of TE buffer (1 mM EDTA, 10 mM Tris-HCl, pH 7.5)-0.1% sodium N-lauroylsarcosine containing 100 µg/ml proteinase K and incubated at 37°C for 1 h to further purify it and to remove contaminants. The aqueous DNA solution was extracted several times with an equal volume of phenol-chloroform mixture and once with an equal volume of chloroform before being precipitated with ethanol.
The plasmid DNA (5 µg) was treated with 2.5 units of S1 nuclease (Roche Diagnostics, Germany) for 40 min at 37°C in 20 µl of incubation buffer (33 mM sodium acetate, 50 mM NaCl, 0.033 mM ZnSO4, pH 4.5). The DNA was separated in a 1.2% SeaKem GTG agarose gel on a CHEF-DRII apparatus at 6 V/cm at 14°C. The run time was 18 h, with the pulse time increasing from 5 to 10 s. The DNA was then visualized with ethidium bromide.
Southern blotting. Southern blotting was performed as previously described (23). The chromosomal or plasmid DNA in agarose gels was transferred to N+ Hybond nylon membranes, followed by UV light cross-linking. A blaCMY-2 DNA probe was prepared from isolate L4 by a PCR with ampC-type gene primers by use of a PCR DIG probe synthesis kit (Roche Diagnostics). A blaCTX-M-14 DNA probe was prepared from isolate L8 by a PCR with blaCTX-M-type gene primers. Hybridization, washing, and detection were performed by the use of DIG Easy Hyb, DIG Wash and Block buffer set, and DIG luminescent detection kits (all from Roche Diagnostics), respectively, according to the manufacturer's instructions.
Conjugation and transformation. Ceftriaxone-resistant isolates were incubated with the recipient E. coli HB101 strain on LB agar for 18 h at 37°C. Transconjugants were selected on LB agar supplemented with streptomycin (750 µg/ml) to inhibit the growth of the donor stains and with ceftriaxone (5 µg/ml) to inhibit the growth of the recipient strain.
Plasmid DNAs isolated from the ceftriaxone-resistant isolates were used to transform E. coli strain DH5
by electroporation. The transformants were selected on LB agar supplemented with ceftriaxone (5 µg/ml).
PCR. The oligonucleotide primers used were as follows: for blaTEM-type genes, 5'-TCG GGG AAA TGT GCG CGG AA-3' and 5'-TTA CCA ATG CTT AAT CAG TG-3'; for blaSHV-type genes, 5'-ATG CGT TAT ATT CGC CTG TG-3' and 5'-TTA GCG TTG CCA GTG CTC G-3'; for blaCTX-M-type genes, 5'-TTT GCG ATG TGC AGT/C ACC AG-3' and 5'-GAT ATC GTT GGT GGT GCC-3'; and for ampC-type genes, 5'-GCA CCA TCA CAC CAC TGA TG-3' and 5'-TTT GCT GTC GCT GCC GTT GA-3'. Each PCR mixture contained 10 pmol of each primer, a 0.2 mM concentration of each deoxynucleoside triphosphate, and 2.5 U of Taq DNA polymerase (Amersham Biosciences Ltd.) in a total volume of 50 µl containing 1x PCR buffer (10 mM Tris-HCl, pH 8.8, at room temperature, with 50 mM KCl and 0.1% Triton X-100) and 1.5 mM, 2.5 mM, 2 mM, or 1.5 mM MgCl2 for blaTEM-, blaSHV-, blaCTX-M-, and ampC-type genes, respectively. Either heat-lysed Salmonella isolates or isolated plasmid DNAs were used as substrates. The PCR mixtures were subjected to 40 cycles in a DNA thermal cycler (Perkin-Elmer) as follows: for blaTEM, denaturation for 30 s at 94°C, annealing for 30 s at 50°C, and extension for 1 min at 72°C; for blaSHV, denaturation for 2 min at 94°C, annealing for 1 min at 50°C, and extension for 2 min at 72°C; and for blaCTX-M or ampC, denaturation for 1 min at 94°C, annealing for 1 min at 55°C, and extension for 1 min at 72°C. The amplification products were visualized by agarose gel electrophoresis and ethidium bromide staining. Clinical isolates of E. coli, P. aeruginosa, K. pneumoniae, and Citrobacter freundii carrying various ß-lactamase genes were used as controls.
Cloning of the blaCMY-2 gene. The plasmid DNA of isolate L4 was digested with the restriction enzyme EcoRI. The resulting DNA fragments were cloned into the vector pCS33, a plasmid derived from pBR322 that is tetracycline resistant and ampicillin sensitive, and selected with ceftriaxone (5 µg/ml) or ampicillin (100 µg/ml) according to the method described by Sambrook et al. (27).
DNA sequencing. The PCR products were purified with a GFX PCR DNA and gel band purification kit (Amersham Biosciences Ltd.) and sequenced by using the primers used for PCR amplification on an ABI PRISM 377 sequence analyzer (Applied Biosystems, Foster City, Calif.). The EcoRI DNA fragment containing the ceftriaxone-resistant determinant from isolate L4 inserted into the plasmid pCS33 was sequenced by using primers designed for the vector and then primers designed for the newly revealed sequence. The region surrounding the blaCTX-M gene of isolate L8 was sequenced as well, using primers for blaCTX-M-type genes and then primers designed for the newly revealed sequence.
Nucleotide sequence accession numbers. The sequences determined for this study were submitted to GenBank under the following accession numbers: isolate L4, AY899923; isolate L5, AY899924; isolate L6, AY899925; isolate L9, AY899926; isolate L10, AY899927; isolate B11, AY899928; isolate B25, AY899929; and isolate L8, AY899930.
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FIG. 1. Distribution of total and ceftriaxone-resistant Salmonella isolates.
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Ceftriaxone-resistant Salmonella isolates. The 31 ceftriaxone-resistant isolates came from 24 patients, with one patient harboring 4 isolates, one having 3 isolates, two patients having 2 isolates each, and the remaining 20 each harboring 1 isolate. Of these 31 strains, 15 ceftriaxone-resistant isolates from stool specimens obtained from eight patients were available for this study. The patients included all four from whom multiple isolates were obtained. According to PFGE analysis and susceptibility testing, the multiple isolates from each of the four patients who had them were considered identical. Therefore, only one isolate from each of the eight patients was studied further. These isolates were serotyped and found to include three S. enterica serovar Typhimurium, 1 S. enterica serovar Wagenia, 1 S. enterica serovar Senftenberg, 1 S. enterica serovar Derby, 1 S. enterica serovar Panama, and 1 S. enterica serovar Duesseldorf strain (Table 1).
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TABLE 1. Clinical data for patients and serotypes and ß-lactamase genes of the eight ceftriaxone-resistant Salmonella isolates
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Susceptibility testing. The MICs of various antibiotics for these eight isolates are listed in Table 2. All isolates were intermediate/resistant to ampicillin, ceftriaxone, and cefotaxime but susceptible to imipenem and ciprofloxacin. The MICs for isolate L8 were very different from the others in that this isolate was highly resistant to ceftriaxone, cefotaxime, and cefepime but was susceptible to ceftazidime.
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TABLE 2. Antimicrobial susceptibilities of eight ceftriaxone-resistant Salmonella isolates
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PFGE. Seven of the eight isolates had unique, discernible PFGE patterns (Fig. 2, left panel). Isolates B25, L4, and L9, all of which were S. enterica serovar Typhimurium strains, were the most similar but were not identical. Isolate L8, an S. enterica serovar Panama strain, resulted in a smear on the PFGE gel (data not shown). PFGE of S. enterica serovar Panama isolates has never been successful and always results in a smear (C. S. Chiang, unpublished data).
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FIG. 2. PFGE patterns and Southern blotting of chromosomal DNAs. (A) PFGE of ceftriaxone-resistant Salmonella isolates after digestion of chromosomal DNAs with NotI. Lane M, molecular size marker; lanes B11 to L10, isolates B11 to L10. (B) Southern blotting of the PFGE gel with blaCMY-2 DNA as the probe. The two photographs were aligned so that the size marker applies to both.
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FIG. 3. Plasmid profiles and Southern blotting. (A) PFGE of plasmid DNAs prepared from ceftriaxone-resistant Salmonella isolates. Lane M, molecular size marker; lanes B11 to L10, isolates B11 to L10. (B) Southern blotting of the plasmid DNAs in panel A with blaCMY-2 DNA as the probe. The arrow indicates the hybridized band. The two photographs were aligned so that the size marker applies to both.
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Southern blotting. A 90-kb NotI fragment in the PFGE gel hybridized with a blaCMY-2 DNA probe for six of the seven isolates that carried the blaCMY-2 gene (Fig. 2, right panel). A fragment of <50 kb was hybridized for isolate L6. No hybridization signal was observed for isolate L8 (data not shown). When a similar gel including isolate L8 was hybridized with a blaCTX-M-14 DNA probe, only a smear with no specific bands was observed for L8 (data not shown), probably due to degradation of the DNA in PFGE. No signal was observed for the other seven isolates.
When Southern blotting using a blaCMY-2 DNA probe was performed on plasmid DNA, one major signal of 90 kb was present for the seven isolates that carried the blaCMY-2 gene (Fig. 3, right panel). Again, no hybridization signal was observed for isolate L8. When the gel was hybridized with a blaCTX-M-14 DNA probe, a smear with no specific bands was observed for L8, and no signal was observed for the other seven isolates (data not shown).
PCR amplification of ß-lactamase genes and DNA sequencing. All isolates except L8 had positive signals in a PCR using primers specific for ampC-type genes. Upon nucleotide sequencing, the PCR products from these seven isolates were found to be identical to each other and to the published blaCMY-2 gene (2). L8 had a positive signal in a PCR using primers specific for blaCTX-M-type genes, and nucleotide sequencing demonstrated that the ß-lactamase was a product of the blaCTX-M-14 gene (8). In addition, isolate B11 demonstrated the blaTEM-1 gene. None of the eight isolates showed evidence of blaSHV-type genes.
Cloning of the region surrounding the blaCMY-2 gene. A 5,429-bp EcoRI fragment surrounding the blaCMY-2 gene from isolate L4 was cloned and sequenced. As shown in Fig. 4, one end of this fragment contained the ISEcp1, blaCMY-2, blc, and sugE genes. The organization was the same as that of pSCR1, a plasmid carrying blaCMY-2 from S. enterica serovar Choleraesuis (GenBank accession number AY253913), and of pNF4565, a plasmid carrying blaCMY-2 from S. enterica serovar Typhimurium (15). The sequence homology of isolate L4 to the corresponding regions in pSCR1 was 100% and that to the corresponding regions in pNF4565 was 99.97%. At nucleotide 49 upstream of the start codon of blaCMY-2, isolate L4 had an A, whereas pNF4565 has a G.
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FIG. 4. Map of blaCMY-2 and blaCTX-M-14 regions from ceftriaxone-resistant Salmonella isolates. Black lines indicate the DNA fragments sequenced. The restriction enzyme sites of EcoRI used for cloning are shown at the top. Arrows below the black lines indicate various genes. The vertical arrow indicates the only nucleotide difference, which occurred at nucleotide 49 upstream of the start codon of blaCMY-2, resulting in either an A or a G.
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For the remaining six blaCMY-2-positive isolates, a 2.5-kb region encompassing the entire blaCMY-2 gene was also sequenced. All six isolates had sequences within this region identical to that of isolate L4, except for nucleotide 49 upstream of the start codon of blaCMY-2 (Fig. 4). Isolates B11 and B25 had an A nucleotide at this position, the same as isolate L4 and plasmid pSCR1, but L5, L6, L9, and L10 had a G, the same as plasmid pNF4565.
Region surrounding the blaCTX-M-14 gene. A region of 1,569 bp surrounding the blaCTX-M-14 gene from isolate L8 was sequenced (Fig. 4) and was 100% homologous to the sequence reported by Chanawong et al. (8). It contained the 3' end of ISEcp1, blaCTX-M-14, and the 5' end of the insertion sequence IS903 transposase gene (6).
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The first ceftriaxone-resistant Salmonella strain isolated in our hospital in 1999 was from the stool of a child with uncomplicated gastroenteritis. There were 2 isolates recovered in 1999 and 13 in 2000, but only 7 and 9 in the next 2 years, so the prevalence does not appear to be increasing rapidly. The highest rate of ceftriaxone resistance was in 2000, whereas both the highest ceftriaxone use and the largest number of gastrointestinal Salmonella infections occurred in 2001. During our study period, there seemed to be no correlation between ceftriaxone resistance and either ceftriaxone use or the number of gastrointestinal Salmonella infections.
Sixteen of the 31 resistant isolates belonged to serogroup B, and the remaining 15 isolates were from three other serogroups. The eight isolates we studied for this report belonged to six different serotypes among four serogroups. That fact, in addition to their acquisition in the community rather than nosocomially, makes it unlikely that they were produced by the clonal spread of a particular ceftriaxone-resistant strain. Furthermore, the blaCMY-2 genes in all seven blaCMY-2-positive isolates were carried by plasmids of the same molecular weight, which suggests that the dissemination of a blaCMY-2-carrying plasmid was responsible for the spread of ceftriaxone resistance in our series.
In southern Taiwan, plasmids carrying the blaCMY-2 genes of Salmonella, E. coli, and K. pneumoniae have shown identical restriction patterns, indicating the interspecies spread and horizontal transfer of the resistant gene (37, 38). In our series, the blaCMY-2 genes resided on plasmids that could be transconjugated as well as transformed into E. coli, making interspecies transfer from other Enterobacteriaceae a possibility. The carriage of both the blaCMY-2 and blaCTX-M-14 genes on conjugal plasmids supports the possibility of horizontal transfer within as well as between species, aiding in an increasingly wide spread of resistance.
Su et al. reported that S. enterica serovar Anatum and E. coli strains isolated from wound cultures of a diabetic patient were initially ceftriaxone susceptible but became ceftriaxone resistant 2 weeks after the initiation of ceftriaxone therapy (32). Because the susceptible and resistant strains were genetically indistinguishable, the authors concluded that these isolates acquired the ceftriaxone-resistant blaCTX-M-3 gene in vivo. In our study, the blaCTX-M-14 gene-carrying isolate L8 was isolated from a 1-year-old boy who had been treated for sepsis with ceftriaxone for 10 days. In both cases, the CTX-M-type ß-lactamases appeared after the use of antibiotics. However, it was not clear whether blaCTX-M was already present and its expression was induced by the pressure of antibiotic use or if the blaCTX-M gene was actually acquired during antibiotic use.
The difference at nucleotide 49 upstream of the start codon of blaCMY-2 was interesting, as three of our isolates had an A, as does plasmid pSCR1, which was isolated from S. enterica serovar Choleraesuis isolates in Taiwan (GenBank accession number AY253913), and the remaining four had a G, as does plasmid pNF4565, which was isolated from S. enterica serovar Typhimurium in the United States (15). It is unclear if this difference indicates that two different DNA fragments carry the same blaCMY-2 gene or that this particular nucleotide mutates easily.
In conclusion, in the majority of ceftriaxone-resistant Salmonella isolates studied, resistance was conferred by the expression of the plasmid-mediated blaCMY-2 gene. In only one of eight isolates, the resistance was due to the plasmid-mediated blaCTX-M-14 gene.
This study was supported by grant MMH9014 from Mackay Memorial Hospital, Taipei, Taiwan. This work was performed at the Mackay Memorial Hospital, Taipei, Taiwan.
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