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Journal of Clinical Microbiology, September 2005, p. 4363-4368, Vol. 43, No. 9
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.9.4363-4368.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Production Animal Clinical Sciences, Norwegian School of Veterinary Science, Oslo,1 Department of Animal Health, National Veterinary Institute, Oslo,2 Matforsk AS, Norwegian Food Research Institute, Ås, Norway3
Received 4 March 2005/ Returned for modification 6 May 2005/ Accepted 30 May 2005
| ABSTRACT |
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| INTRODUCTION |
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Disinfectants based on quaternary ammonium compounds (QACs) have various applications in veterinary medicine and play an important role in the control of animal disease. The QACs benzalkonium chloride (BC) and cetyltrimethylammonium bromide (CTAB) are active components in various teat preparations commonly used for mastitis prevention in dairy herds in Norway and other countries (5, 6). Efflux-mediated resistance to QACs has been observed in staphylococci of various origins, and several staphylococcal QAC resistance genes have been identified (2, 5, 6, 7, 9, 10, 11). These genes are in general plasmid-borne (21), encoding efflux proteins capable to expel hydrophobic drugs including QACs, the intercalating dye ethidium bromide (EtBr), and some other cationic biocides. The nearly identical genes qacA and qacB (denoted qacA/B gene here) are normally harbored by large plasmids of >20 kb, whereas the remaining QAC resistance genes have most frequently been found within their gene cassettes on small plasmids of less than 3 kb, where they encode efflux proteins belonging to the small multidrug resistance family (1, 14, 17, 18).
Little is known about the occurrence of QAC-resistant staphylococci in dairy herds and in raw milk from such herds. The QAC resistance determinants involved and the extent to which such determinants are spread between herds remain unclear. Typing of S. aureus resistant to various antibiotics has shown that certain strains are widely disseminated in dairy herds, clearly demonstrating that clonal spread of resistant organisms is important (30). Moreover, apparently identical plasmids carrying antibiotic resistance determinants have been found in different S. aureus strains recovered from various dairy cattle herds and horse operations, suggesting that mechanisms other than clonal spread are also involved in the dissemination of resistance genes (7, 30).
Studies in Norway of human clinical staphylococci and food-related staphylococci have shown that a linkage between QAC resistance and penicillin resistance occurs quite frequently (23, 24). qacA/B and the ß-lactamase gene (blaZ) were found to reside on common plasmids. Thus, it is conceivable that the use of QACs for disinfection in hospitals and farm animal operations could select for penicillin-resistant staphylococci and vice versa.
Here we report on the prevalence and molecular epidemiology of QAC-resistant staphylococci in raw milk from dairy cattle and goat herds. We identified the QAC resistance genes and characterized plasmids carrying them. In staphylococci resistant to both QACs and penicillin, we examined whether blaZ and a QAC resistance gene were residing on common plasmids.
| MATERIALS AND METHODS |
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One dairy cattle herd (B-2), in which QAC-resistant staphylococci were isolated from bulk milk, bulk milk samples were collected three times during a 30-month period in order to study whether such organisms persisted in the herd. To examine whether QAC-resistant staphylococci were of intramammary origin, quarter milk samples were collected aseptically from all lactating cows in herd B-2 and four herds that used a common pasture and a common milking parlor during the summer (B-51, B-52, B-53, and B-54).
Screening procedure. Milk (100 µl) was spread on blood agar plates containing BC (11 µg/ml) and incubated for 24 h at 37°C. From plates on which growth was detected, one to five colonies of different appearance were selected for further examination with regard to efflux-mediated resistance. Isolates were grown for 24 h at 37°C on Mueller-Hinton agar containing EtBr (0.5 µg/ml), followed by inspection for fluorescence under UV light as described previously (25). Cells accumulating EtBr had a red fluorescence and were considered QAC sensitive; cells that did not accumulate EtBr were white and were defined as QAC resistant.
Antimicrobial susceptibility. MICs of BC and CTAB were determined in a microtiter assay at 0.5-µg/ml concentration intervals from 0 to 18 µg/ml in Mueller-Hinton broth as described previously (25) and were carried out twice. The MICs of the following antibiotics were determined by Etest (AB Biodisk, Solna, Sweden), using S. aureus ATCC 29213 as a reference strain: benzylpenicillin (PEN), streptomycin (STR), tetracycline (TET), trimethoprim (TMP), sulfadiazine (SUL), fusidic acid (FUS), and oxacillin. The ß-lactamase activity was detected by using the microbiological cloverleaf test (3, 20).
PCR amplification. The primers used for PCR amplification (Invitrogen, Paisley, United Kingdom) of qacA/B and smr were the same as used previously (2, 6). Primers specific for the genes qacG, qacH, qacJ, and blaZ were designed from previously known sequences (EMBL accession numbers Y16944, Y16945, AJ512814, and X52734, respectively): qacG-For (5'-CAACAGAAATAATCGGAACT-3')/Rev (5'-TACATTTAAGAGCACTACA-3'), qacH-For (5'-ATAGTCAGTGAAGTAATAG-3')/Rev (5'-AGTGTGATGATCCGAATGT-3'), qacJ-For (5'-CTTATATTTAGTAATAGCG-3')/Rev (5'-GATCCAAAAACGTTAAGA-3'), and blaZ-For (5'-TACAACTGTAATATCGGAGGG-3')/Rev (5'-AGGAGAATAAGCAACTATATCATC-3'). The following strains were used as positive controls: Staphylococcus haemolyticus NVH97A (qacA/B blaZ) (2), S. aureus NVH99 (smr) (6), Staphylococcus warneri ST94 (qacG) (10), Staphylococcus saprophyticus ST2H6 (qacH) (9), and S. aureus NVH01 (qacJ) (7). The composition of each 50-µl PCR mixture was as recommended by the manufacturer, using DyNAzyme II DNA polymerase with supplementary reagents (Finnzymes Oy, Espoo, Finland). PCR conditions included DNA denaturation at 95°C for 60 s, followed by 30 cycles at 95°C for 60 s, annealing for 45 s at 40°C (qacA/B), 48°C (smr, qacG, qacH, and qacJ), or 50°C (blaZ), and then 72°C for 60 s. To obtain probes for DNA hybridization, PCR was carried out with the control strains from the above-described PCR experiments as templates. The resulting PCR products were analyzed by agarose gel electrophoresis.
DNA isolation and hybridization.
Plasmid DNA was isolated by using the QIAprep Spin Miniprep Kit (QIAGEN, Hilden, Germany) modified by adding lysostaphin (Sigma-Aldrich, St. Louis, Mo.) as described previously (6). Plasmid DNA from 55 staphylococcal isolates was separated by gel electrophoresis in 0.8% SeaKem LE agarose (FMC BioProducts, Rockland, ME) with Supercoiled DNA Ladder (Life Technologies, Paisley, United Kingdom) as a molecular weight marker. The size of plasmids was estimated by using the GeneGenius gel documentation and analysis system (SynGene Laboratories, Cambridge, United Kingdom). By extrapolating a standard curve, this procedure allows initial size estimation of plasmids above the range of the molecular weight marker, which only goes up to 16 kb. The localization of QAC resistance genes and blaZ was determined by using the following procedure: plasmid DNA was blotted from the agarose gels to nylon membranes (Hybond N+; Amersham Biosciences, Little Chalfont, United Kingdom) by using Southern blotting according to described procedures (22). PCR products amplified with primers specific for the genes qacA/B (common probe), smr, qacG, qacH, qacJ, and blaZ were used as probes after purification with the QIAgen Gel Extraction kit (QIAGEN). The probes were labeled with [
-32P]dCTP (Hartmann Analytic GmbH, Braunschweig, Germany) by using Ready-To-Go DNA labeling beads (Amersham Biosciences, Piscataway, NJ). Prehybridizations, hybridizations, and washing were carried out according to standard procedures (22). The membranes were finally exposed to autoradiography film (Kodak, Rochester, N.Y.) at 70°C.
Species determination. Identification of staphylococci was based on standard laboratory criteria (colony morphology, hemolytic zones, and production of catalase and coagulase) and the use of Staph-Zym biochemical test kit (Rosco, Tåstrup, Denmark). In addition, ca. 83% of the sodA gene, the internal fragment denoted sodAint, was sequenced by using a degenerate primer pair d1/d2 (Invitrogen) as described previously (19). Moreover, partial sequencing of the 16S rRNA gene was subsequently carried out for those not identified to species level by Staph-Zym and sodA sequencing, with the primers 16S rRNA For/Rev used previously (7). In order to obtain at least 85% of the 16S rRNA sequence, three additional primers were constructed and used: 16S rRNA-For357 (5'-GAAAGCCTGACGGAGCAAC-3'), 16S rRNA-Rev1068 (5'-CCAACATCTCACGACACGAG-3'), and 16S rRNA-Rev1402 (5'-CAAACTCTCGTGGTGTGACG-3'). The sequencing was carried out with the capillary sequencer 3100-Avant genetic analyzer (Applied Biosystems, Foster City, Calif.) and BigDye Terminator v3.1 Cycle Sequencing (Applied Biosystems). Sequences were edited and aligned by using the BioEdit program (http://jwbrown.mbio.ncsu.edu/BioEdit/bioedit.html), and homology searches were performed with the NCBI GeneBlast.
Sequencing of QAC resistance plasmids and genes. Five plasmids were selected for sequencing in order to detect the possible presence of previously characterized plasmids (6, 7, 10). Single-strand sequencing was chosen as the most appropriate method compared to plasmid restriction analysis of isolates containing more than one plasmid. The plasmids were isolated from smr-containing S. aureus, qacG-containing Staphylococcus cohnii and S. warneri, and qacJ-containing Staphylococcus hominis and Staphylococcus delphini (Table 1). Using plasmid DNA from these five strains as a template, single-strand sequencing was carried out by primer walking starting with the primer pairs smr-For/Rev (6), qacG-For/Rev, and qacJ-For/Rev. All sequencing, editing, alignment, and homology searches were performed as described for the species determination. In order to confirm PCR results (14 strains) indicating a previously described partial smr sequence duplication designated qacC' (13), three strains from different species were selected for plasmid-borne gene sequencing: S. saprophyticus, S. warneri, and S. haemolyticus belonging to PFGE types SS-2, SW-1, and SH-3b, respectively (Table 1). Primers specific for qacC' were designed for a final screening PCR of all smr-containing isolates: qacC'-For (5'-AATAAAATACGAAAATTAAAAGGAG-3') and -Rev (5'-ACGCCGACTATGATTAAAAC-3'). S. aureus NVH99 (smr) and Staphylococcus pasteuri (PFGE type SP-1) were used as negative controls. PCR was carried out under the same conditions as described for detection of the gene smr.
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| RESULTS |
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Species determination. The distribution of the 42 isolates among staphylococcal species is presented in Table 1. Staph-Zym biochemical test kit results were in agreement with sodA sequencing results for 32 of totally 42 isolates: S. haemolyticus (14 isolates), S. warneri (13 isolates), S. saprophyticus (2 isolates), S. aureus (1 isolate), Staphylococcus epidermidis PFGE type SE-1 (1 isolate), and S. hominis PFGE type SO-1 (1 isolate). Staph-Zym failed to assign a species name for the ten remaining isolates; six of these isolates were assigned a species name based on sodA sequencing results: Staphylococcus caprae, S. pasteuri, S. epidermidis PFGE type SE-2, S. hominis PFGE type SO-2, S. cohnii, and S. delphini. Unacceptable sodA sequence homology (ca. 90%) was obtained for the four remaining isolates: Staphylococcus sp. PFGE type SC-1 (two isolates) and Staphylococcus sp. PFGE type SC-2 (two isolates). However, pairwise alignment of the sodA sequences from the two Staphylococcus sp. PFGE types SC-1 and SC-2 showed 95% identity. Subsequent sequencing of more than 85% of the 16S rRNA gene did not result in sufficient information to identify the species of these isolates, and thus they were designated Staphylococcus spp. These findings indicate the possible presence of one or two novel staphylococcal species.
Genes and plasmids identified by PCR and sequencing. PCR detected four different QAC resistance genes (Table 1). The gene smr was found in 21 bovine and six caprine isolates, and the qacC' sequence duplication was detected in 12 bovine and 2 caprine isolates; the presence of qacC' sequence was confirmed by partial plasmid sequencing and showed 100% identity to the corresponding sequence in pSK108 (13). Single-strand primer walking sequencing of five selected plasmids resulted in complete plasmid sequences and identification of the two previously sequenced smr- and qacJ-containing plasmids pNVH99 (6) in S. aureus and pNVH01 (7) in S. hominis and S. delphini based on 99 to 100% sequence identity. qacG was harbored by two different plasmids, both showing ca. 90% sequence identity to the previously sequenced qacG-containing plasmid pST94 (10) and therefore considered as pST94-like plasmids (Table 1). However, the conserved qacG sequence in the two pST94-like plasmids was 100% identical to the previously sequenced qacG (10).
blaZ and QAC-resistance genes on common plasmids. Hybridization revealed that the blaZ and qacA/B genes were linked together on common plasmids of similar sizes in nine isolates (S. warneri, Staphylococcus sp.), including one caprine S. warneri isolate. However, in one S. pasteuri isolate, smr resided on a 5.6-kb plasmid, and a 26-kb plasmid harbored blaZ but not qacA/B (Table 1).
Susceptibility. MICs for BC and CTAB are presented in Table 1. A total of 29 isolates were resistant to PEN (all ß-lactamase producing); 27 of these had MICs from 0.25 to 1.0 µg/ml, while the MICs for two isolates (Staphylococcus sp. PFGE type SC-2) were 0.125 µg/ml (the cutoff value for PEN-susceptible strains). Plasmid-borne blaZ was present in 10 isolates. Resistance to STR was detected in 10 isolates, with MICs ranging from 96 to >256 µg/ml. Two isolates were resistant to TET, and four isolates were resistant to FUS. One S. haemolyticus isolate carrying both qacA/B and smr was resistant to PEN, STR, TET, and FUS, and moderately resistant to TMP (MIC = 24 µg/ml). One S. haemolyticus isolate (herd B-4) was resistant to SUL (MIC > 1,024 µg/ml) and moderately resistant to TMP (MIC = 16 µg/ml). All isolates were susceptible to oxacillin.
PFGE types. PFGE types within staphylococcal species are presented in Table 1. Eight different PFGE types of S. warneri were identified. Isolates with indistinguishable or closely related (one- to three-band differences) PFGE patterns (SW-2 and SW-4) were recovered from different cattle herds. S. warneri isolates from two cattle herds (B-9 and B-13) and one goat herd (C-4) were closely related (SW-4a and SW-4b). Closely related PFGE types of S. warneri (PFGE type SW-3) were also identified in three different goat herds. Isolates of Staphylococcus sp. with PFGE type SC-2 were recovered from two different cattle herds (B-16 and B-17), and Staphylococcus sp. with another PFGE pattern (SC-1) was identified in two other herds (B-18 and B-24). Five PFGE types of S. haemolyticus were identified; indistinguishable or closely related types (SH-1, SH-2, and SH-3) were identified in different cattle herds, and one particular type (SH-1b) was found in two different cattle herds (B-53 and B-54) that shared a common pasture and milking parlor during summer.
| DISCUSSION |
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Infected mammary glands could be a source for QAC-resistant staphylococci isolated from tank milk, but such organisms may also originate from teat skin or other extramammary reservoirs. Besides being screened for QAC-resistant staphylococci, the quarter milk samples were examined bacteriologically using methods based on recommendations of the International Dairy Federation as previously described (6). The presence of indistinguishable PFGE types of S. warneri (SW-1) in mammary quarter milk and bulk milk from the same herd suggests that mammary glands were a likely source of this strain. Furthermore, indistinguishable PFGE types of S. haemolyticus (SH-1a) were recovered from the bulk milk in one herd and from milk from infected mammary quarters of cows in another herd. Another S. haemolyticus PFGE type (SH-1b), closely related to SH-1a, was recovered from bulk milk from three different herds and from infected quarters of cows in two other herds. Thus, at least some of the QAC-resistant CoNS in bulk milk were mammary pathogens.
From the agar plates used for screening, only a limited number of colonies was selected for further characterization. Nevertheless, QAC-resistant isolates of both S. aureus, coagulase-positive S. delphini, and several CoNS species were found. The most prevalent species were S. haemolyticus and S. warneri. S. aureus was found in only one cattle herd, suggesting that bovine and caprine S. aureus are less likely to confer QAC resistance than are certain species of CoNS.
All previously known plasmid-borne staphylococcal QAC resistance genes, except for the qacH gene, were identified. The smr gene was the most prevalent and was harbored by small plasmids (2.2 to 3.6 kb) in 23 different isolates belonging to various staphylococcal species and by large plasmids (23 kb) in three S. haemolyticus isolates with indistinguishable PFGE patterns. In the single S. aureus strain, smr was located on the 2.2-kb pNVH99 plasmid previously detected in bovine S. aureus (6). Interestingly, isolates of S. pasteuri and S. warneri harbored smr on medium-sized plasmids (5.6 to 5.8 kb), a phenomenon not previously reported.
Partial sequence duplication of the smr gene (qacC') previously found in pSK108 (13) occurred in 15 of the isolates that contained smr. These isolates belonged to four CoNS species; two were S. saprophyticus isolates of caprine origin. This cassette feature appears to be quite widespread and could easily be overlooked, since common smr primers do not necessarily amplify the slightly larger additional PCR product in sufficient quantities. The MIC results in our study support previous findings that the partial smr sequence duplication is unlikely to mediate any significant effect on the resistance to QACs (13).
qacA/B was found on large plasmids (18 to 26 kb) in 12 isolates representing four different CoNS species. Eight of these were S. warneri isolates. With the exception of a S. haemolyticus isolate, which contained both qacA/B and smr located on separate plasmids, the isolates contained only one of the plasmid-borne QAC resistance genes.
The qacG gene, which was found in one S. warneri and one S. cohnii isolate, resided on plasmids closely related to pST94 (10). qacJ was found in S. hominis and S. delphini isolates, in both isolates harbored by pNVH01. Previously, qacJ located on this plasmid has been found in equine isolates of S. aureus, S. simulans, and S. intermedius (7); thus, pNVH01 is disseminated among multiple staphylococcal species of both bovine and equine origin.
PFGE typing of the CoNS showed that certain types occurred in two or more herds. Particularly widespread were three closely related S. haemolyticus strains (PFGE types SH-1a, SH-1b, and SH-1c), which were recovered from eight cattle herds in five different counties. Closely related PFGE types of S. warneri (SW-3a, SW-3b, and SW-3c) were present in three different goat herds located in two different counties. A different subset of closely related S. warneri PFGE types (SW-4a and SW-4b) was recovered from one goat herd and two cattle herds within the same county. The staphylococci for which the sodA and 16S rRNA sequences did not agree with sequences of species currently identified by these analyses belonged to two different PFGE types, and each type was found in two different cattle herds within the same county. Thus, clonal dissemination seems to be an important mode for the spread of QAC-resistant CoNS between dairy herds, including spread between cattle and goat herds.
Plasmid-borne blaZ was detected in 10 (34%) of the 29 penicillin-resistant isolates. A study in Denmark of bovine S. aureus containing blaZ found that this gene was located on plasmids in only 7% of the isolates (29). In the present study, blaZ and qacA/B coresided on large plasmids in nine different isolates. Recent studies in Norway of human clinical staphylococcal isolates and food-related staphylococci suggest that there is a linkage between resistance to QACs and resistance to penicillin (23, 24). In human hospital environments, it has been shown that staphylococci resistant to BC more frequently were resistant to certain antibiotics than were BC-sensitive isolates, indicating that the presence of either resistance determinant selects for the other during antimicrobial therapy and disinfection (23). In one of the herds, where QAC preparations were used daily for teat disinfection to prevent mastitis, milk samples were collected on several occasions. Indistinguishable PFGE types of QAC-resistant S. warneri were isolated 30 months apart. Apparently, certain QAC-resistant CoNS can persist for long periods in herds where QACs are used routinely for disinfection.
In conclusion, QAC-resistant staphylococci occur quite frequently in bulk milk shipped from dairy cattle and goat farms in Norway. S. warneri and S. haemolyticus seem to be the most common species in unpasteurized milk but other CoNS, the coagulase-positive S. delphini, and S. aureus were also isolated. Various plasmid-borne genes were responsible for the observed QAC resistance; the genes qacA/B, smr, qacG, and qacJ were detected. The fact that certain staphylococcal PFGE types were recovered from more than one herd shows that the occurrence of QAC-resistant staphylococci in dairy herds can be the result of clonal spread. In addition, the presence of identical QAC resistance genes, and certain plasmids carrying such genes, in different staphylococcal species and PFGE types clearly suggest that transfer of QAC resistance genes among species and strains contributes to the dissemination of staphylococcal QAC resistance. The presence of qacA/B and blaZ on common plasmids in seven S. warneri isolates and two isolates of an unidentified Staphylococcus sp. seems to support the previous observation that there is a linkage between resistance to QAC and penicillin resistance in staphylococci. This may allow for coselection due to antibiotic treatment or disinfection using QACs.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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| REFERENCES |
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