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Journal of Clinical Microbiology, September 2005, p. 4766-4772, Vol. 43, No. 9
0095-1137/05/$08.00+0 doi:10.1128/JCM.43.9.4766-4772.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Microbiology, All India Institute of Medical Sciences, New Delhi, India,1 Division of Infectious Diseases, Departments of Medicine,2 Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York3
Received 19 May 2005/ Returned for modification 2 June 2005/ Accepted 9 June 2005
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C. neoformans laccase catalyzes the formation of melanin in the presence of a variety of phenolic precursors (46, 47). Melanins are complex polymers with covalently linked aromatic subunits, including indoles, phenols, and hydroxynaphthalenes (30). In C. neoformans, melanin forms an electron-dense layer in the cell wall (29, 44) and comprises approximately 15% of the dry weight of late-stationary-phase melanized C. neoformans (45). Melanin synthesis in C. neoformans is associated with protection against oxidants, extremes in temperature, enzymatic degradation, UV light, microbicidal peptides, antifungals, and macrophages in vitro (reviewed in reference 30). Pigmentation also induces the production of antimelanin antibodies (31) and interferes with protective T-cell responses (15). Furthermore, cryptococcal laccase has been demonstrated to confer significant protection against murine alveolar macrophages independent of dopamine (44).
We detected distinct pigmented and albino phenotypes of C. neoformans from cerebral fluid samples from three patients at the All India Institute of Medical Sciences (AIIMS), New Delhi, India. This study was undertaken to determine whether these isolates were the result of dual infections with C. neoformans or a result of phenotypic variation. C. neoformans can undergo phenotypic variation and microevolution after in vitro or in vivo passage (9-13, 38). Phenotypic switching results in reversible phenotypic changes in microorganisms. Phenotypic switching in C. neoformans has been shown to result in significant differences in capsule size, melanin production, growth rates, virulence in mice (9), and susceptibility to antifungal drugs (13). Microevolution of C. neoformans occurs in vivo and in vitro and results in phenotypic as well as genotypic changes in the organism (12). The results of our investigation revealed that the patients were infected with distinct strains of C. neoformans and that the melanin-producing and albino strains were biologically different.
(The data in this paper are from a thesis to be submitted by Piyali Mandal in partial fulfillment of the requirements for the degree of doctor of philosophy in the Department of Microbiology, AIIMS, New Delhi, India.)
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C. neoformans 500w and -b, 716w and -b, and 764w and -b were also plated on chemically defined agar medium (60 mM glucose, 117.6 mM KH2PO4, 40 mM MgSO4 · 7H2O, 52 mM glycine, 12 µM thiamine, 2% agar) with or without 1 mM L-dihydroxyphenylalanine (L-DOPA) and incubated at 30°C. The resulting colonies were collected, washed in phosphate-buffered saline (PBS), and subjected to a melanin isolation procedure as described elsewhere (36).
Identification of the isolates as C. neoformans. The pigmented (500b, 716b, and 764b) and albino (500w, 716w, and 764w) strains were subjected to the following biochemical tests according to the instructions of the manufacturer (bioMérieux, Durham, NC): (i) API 20, (ii) ID 32, and (iii) VITEK. Serotyping of the strains was determined by slide agglutination test using a crypto check kit (IATRON Laboratories, Tokyo, Japan). Immunofluorescence was performed with monoclonal antibodies (MAb) 12A1 and 13F1, antibodies specific for the capsular polysaccharide (GXM) of C. neoformans as described previously (7). These MAbs have been used for identifying serotypes A and D of C. neoformans (4).
Molecular typing of the isolates. High-molecular-weight DNA was extracted from the C. neoformans strains. Yeast cells were grown at 30°C in SAB broth with shaking for 48 h, collected by centrifugation, and suspended in SCB (1.1 M D-sorbitol and 0.1 M sodium citrate). The cells were again collected and incubated in SCB with 10 mg/ml lysing enzyme (Sigma Chemical Corp., Cleveland, OH) for 3 h at 30°C. The resulting protoplasts were collected, suspended in lysis buffer (10 mM sodium citrate, 1% sarcosine, 5 mM EDTA) with 0.1 mg/ml RNase A, and incubated at 65°C for 2 h followed by phenol-chloroform extraction. PCR amplification and analysis were done using the oligonucleotide minisatellite core sequence of wild-type M13 phage (5'-GAGGGTGGCGGTTCT-3') and [GACA]4 primers. The reactions were performed in a final volume of 50 µl with 30 ng of high-molecular-weight genomic cryptococcal DNA, 0.01 ng primers, 5 U Taq polymerase, and 45 µl of PCR Supermix (Invitrogen, Carlsbad, CA). The amplification was performed for 40 cycles in an Eppendorf thermal cycler (94°C for 5 min, 94°C for 1 min, 52°C for 1 min, 72°C for 1 min, and 72°C for 10 min). The amplification products were separated on a 1.4% agarose gel in 1x Tris-borate-EDTA for 7 h at 3 V/cm and observed under UV light.
Determination of the presence and expression of CNLAC1. The presence of the CNLAC1 gene in each strain was confirmed using the specific primers for the CNLAC1 gene (8). PCR was done with the primers 5'-GGCGATACTATTATCGTA-3' and 5'-TTCTGGAGTGGCTAGAGC-3'. The reaction was performed and the amplification products separated and observed as described above.
The expression of the CNLAC1 gene was determined by Western blot analysis. Cells were grown in SAB for 48 h and were centrifuged at 2,000 rpm for 10 min. The cells were suspended in 0.1 M Na2HPO4 with protease inhibitor and treated for 6 min in a bead beater at 2-min intervals alternating with 5 min on ice. Supernatants were separated from cellular debris by centrifugation at 8,000 rpm for 10 min. Western blot analysis was performed using the supernatants in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis with the laccase-binding MAb G3P4D3 (48) at 5.0 µg/ml followed by horseradish peroxide-labeled anti-mouse antibody at a dilution of 1:5,000 (Southern Biotechnology Associates). Labeling was visualized using Pico luminescent developer (Pierce, Rockford, IL) according to the manufacturer's instructions.
Growth characteristics. Several characteristics of growth were studied to determine differences between the melanized and albino isolates. Cultures of C. neoformans were grown in SAB at 37°C to confirm their capacity to grow at mammalian body temperatures. The growth rates of the isolates with and without L-DOPA was determined at 30°C by measuring cell density at different time intervals by hemacytometer. After 10 days of growth in the presence or absence of L-DOPA, India ink preparations were made and measurements were obtained for cell and capsular size by light microscopy.
Susceptibility of C. neoformans to AMB. Antifungal susceptibility testing was performed for amphotericin B (AMB; Sigma) according to the National Committee for Clinical Laboratory Standards M-27A protocol (28), except that cultures were grown in SAB with and without L-DOPA at 30°C for 15 days in a rotary shaker at 125 rpm prior to use. This allowed the cells capable of melanin production to become pigmented. The cells were collected by centrifugation at 2,000 rpm for 15 min and suspended in their respective medium with or without L-DOPA for 48 h to induce log-phase growth for testing, per the National Committee for Clinical Laboratory Standards M-27A protocol (28). Final concentrations of AMB were 0.06 to 4 µg/ml. The minimum concentration at which the suspension was optically clear was determined to be the MIC.
Time-kill assay. The cells used for MIC testing were also subjected to a time-kill assay as described previously (41). Briefly, cell suspensions were made in PBS at concentrations of 3 x 104 cells/ml as determined by hemacytometer counts. Cell suspensions of 900 µl were added to 100-µl aliquots of different concentrations of AMB and incubated at 30°C for 2 and 4 h. The final concentration of AMB in the tubes ranged from 0 to 2.0 µg/ml. The cells were plated for CFU (1 colony = 1 CFU) on SAB agar at 30°C. The percent survival was determined by dividing the CFU of the fungal cells by the CFU of the cells incubated in PBS (drug-free control).
Fungal burden and survival studies. The animal experiments were performed with C. neoformans strains 500b and 500w. The yeast cells were grown in SAB without L-DOPA for 48 h. The cells were then collected by centrifugation, washed with PBS, and suspended in PBS. For fungal burden studies, A/JCr mice (6- to 8-week-old females; National Cancer Institute, Rockville, MD) were inoculated intraperitoneally with 2 x 107 yeast cells. After 3 or 7 days, the mice were sacrificed to determine the fungal load in the lung. Lungs were homogenized in 3 ml PBS, and 50 µl of the homogenized tissue was plated on SAB agar and incubated at 30°C for 72 h. For survival studies, A/JCr mice were inoculated intraperitoneally with 1 x 108 yeast cells. The mice were observed twice daily, and moribund mice were sacrificed prior to death. All surviving mice were sacrificed at 69 days after infection. The animal studies were performed in compliance with institutional guidelines for animal experimentation at the Albert Einstein College of Medicine.
Determination of phenotypic switching. In addition to the SAB agar plates made from homogenized lung tissue described above, aliquots of the homogenate were also plated on chemically defined agar medium with 1 mM L-DOPA and incubated at 30°C for 10 days to observe whether any in vivo switching from melanin-producing to melanin-lacking C. neoformans occurred, or vice versa. Similarly, melanin-producing and albino isolates were grown in SAB broth, plated onto chemically defined agar medium with 1 mM L-DOPA, and incubated at 30°C 15 days to observe whether phenotypic changes occurred with these strains in vitro.
Statistical analysis. Statistical significance was determined using Student's t test or the Kruskal-Wallis nonparametric analysis of variance test (Primer; McGraw-Hill, New York, N.Y.), depending on the data.
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The biochemical tests with API 20, ID32, and VITEK indicated that the albino (500w, 716w, and 764w) and pigmented (500b, 716b, and 764b) strains were C. neoformans. Serotyping of the isolates with the IATRON system and the MAbs 13F1 and 12A1 showed that the albino isolates were each serotype D and the pigmented isolates were serotype A. Hence, the pigmented and albino isolates are C. neoformans and the serotypes of the pigmented and albino isolates are serotypes A and D, respectively.
PCR fingerprinting. The PCR fingerprinting analysis with M13 minisatellite core sequence and [GACA]4 showed differences in the band pattern of melanin-producing and white C. neoformans isolates (Fig. 1). The main bands for the melanotic strains were in accordance with VN I and the albino strains were in accordance with VN IV as described elsewhere (26). This establishes that the two types of C. neoformans isolates obtained from single patients were different and had distinct serotypes.
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FIG. 1. Random amplified polymorphic DNA analysis with M13 (a) and [GACA]4 (b) showing different band patterns for 500w (B), 500b (C), 716w (D), 716b (E), 764w (F), and 764b (G). Lane A represents the molecular marker.
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FIG. 2. The albino and melanotic isolates contained the CNLAC1 gene and expressed laccase. (a) PCR with specific primers for the CNLAC1 gene in C. neoformans ATCC 24067 (A), 500w (B), 500b (C), 716w (D), 716b (E), 764w (F), and 764b (G). (b) Western blot analysis of whole-cell suspensions of albino and melanotic strains of C. neoformans: recombinant laccase (A), 500w (B), or 500b (C). The cells were derepressed in the absence of glucose, and the blots were developed with G3P4D3 clone monoclonal antibody specific for laccase (48).
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C. neoformans isolates 500b and 500w were used for cell size comparisons. More than 30 cells were analyzed per group and the experiment was repeated twice with similar results. The diameter of albino 500w C. neoformans cells was significantly smaller than 500b yeast cells when grown with L-DOPA (5.6 ± 0.7 versus 6.6 ± 0.9 µm; P = 0.03) or without L-DOPA (5.6 ± 1.0 versus 5.9 ± 1.1 µm; P < 0.001). However, the total cell size (cell body and capsule) of the albino 500w yeast cells was significantly larger than the 500b cells under either growth condition (with L-DOPA, 15.9 ± 5.1 versus 12.7 ± 2.1 µm; without L-DOPA, 15.4 ± 2.3 versus 11.8 ± 2.6 µm; P < 0.001). Hence, the cells capable of producing melanin were found to have smaller capsule-to-cell ratios compared to the albino C. neoformans regardless of the presence or absence of phenolic substrate. Interestingly, the cell size of 500b yeast cells was significantly smaller when the isolate was grown with L-DOPA compared to without L-DOPA (6.6 ± 0.9 versus 5.9 ± 1.1 µm; P = 0.009).
Susceptibility to amphotericin B. The in vitro susceptibilities of the C. neoformans cells were the same for the three albino and three pigmented isolates tested. The MICs were 0.5 µg/ml. The susceptibility testing was repeated twice with similar results. When the albino and the melanin-producing C. neoformans isolates were grown with L-DOPA, the pigmented cells were significantly less susceptible to killing by AMB after 2-h incubations than the albino yeast (Fig. 3). The protective effect was more pronounced after 2 h compared to 4 h, when increased cell death occurred under all conditions examined. Consistent with previous reports (18, 41), the melanin-producing isolates were significantly less susceptible to antifungal killing when grown in the presence of L-DOPA than in its absence at 1, 2, and 4 µg/ml AMB. However, there were no differences in survival when albino yeast cells were grown without L-DOPA (data not shown).
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FIG. 3. Comparison of survival rates of melanotic strains with albino strains of C. neoformans after exposure to different concentrations of amphotericin B for 2 and 4 h in comparison to the C. neoformans cells incubated in PBS. Similar time-kill results were obtained with C. neoformans strains 716 (b and w) and 764 (b and w). The antifungal susceptibility test and the time-kill assay were repeated once, and the results were reproduced.
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FIG. 4. Albino isolates are less virulent than melanotic C. neoformans. (a) Light microscopy of eosin- and hematoxylin-stained lung tissue of A/Jcr mice after 3 and 7 days of infection with 2 x 107 melanin-producing 500b (A and C) or albino 500w (B and D) C. neoformans cells. Original magnification, x20. The arrow in the insert in panel C indicates the presence of numerous cryptococcal yeast cells (original magnification, x100). (b) Survival experiment of mice infected with 1 x 108 albino 500w or pigmented 500b C. neoformans cells. n = 5 mice. The experiment was repeated, and similar results occurred.
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The melanin-producing C. neoformans 500b isolate was significantly more lethal than the albino 500w strain (P = 0.013) (Fig. 4). Whereas no deaths occurred in mice infected with the albino strain, death occurred as early as 12 days after infection with the pigmented strain.
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Mixed infections with C. neoformans have been previously reported. In 1995, Haynes et al. reported that paired isolates were genetically distinct in three of five individuals with HIV and cryptococcosis and suggested that this represented dual infection (14). Subsequently, a larger study of serial isolates from 33 individuals with HIV documented the persistence of a single C. neoformans isolate and failed to find evidence for dual infection or reinfection with a second strain (2). Nevertheless, additional instances of dual infections and acquisition of a second strain of C. neoformans have been described (16, 21, 37, 38). Since routine typing of isolates is performed on one or two selected colonies, a strain present in low numbers relative to a second strain might not be detected. There also remains the question as to whether individuals with dual infections acquire the organism concomitantly or sequentially. Since environmental sites can harbor more than a single strain of C. neoformans (6), it would be possible to have an initial mixed infection. It is significant that infection with C. neoformans can result in the down-regulation of diverse host immune responses, primarily through interactions of the capsular polysaccharide with host immune cells (reviewed in reference 43). The suppression of protective responses would facilitate the persistence of less-virulent coinfecting strains of C. neoformans. Supporting this possibility are reports describing saprobic nonneoformans varieties of Cryptococcus, such as C. laurentii, in mixed infections with C. neoformans (22).
In C. neoformans, CNLAC1 is primarily responsible for melanin production (8). The albino isolates described here expressed CNLAC1 in vitro. The partial CNLAC1 gene sequences of the albino isolates were identical to the sequence of the standard ATCC 3501 strain (GenBank accession number L22866) (46) except at position 62, where a tyrosine replaced histidine. This position represents a potentially important copper binding site, and the change from an aliphatic to aromatic may affect the capacity for metal binding by the albino strains. The copper binding sites are intact in the pigmented isolates. Interestingly, a recent report of the analysis of CNLAC1 sequences of spontaneous melanin-deficient mutants that occurred during routine maintenance of laboratory strains also found that the deficient isolates were homologous to their parental strains (39). It is possible that there are mutations outside of the partially sequenced area of the CNLAC1 gene in the albino isolates that alters its activity or in other genes that may affect melanin production, such as through the cyclic AMP cascade (34). Recently it has been shown that there are two genes responsible for the melanin production (27, 34). LAC1 codes for the laccase enzyme that catalyzes the rate-limiting step in diphenol oxidation and melanin production. The second gene is LAC2, which is adjacent to LAC1 and encodes a second laccase that shares 75% nucleotide identity with LAC1. Hence, the fact that melanization does not occur in our albino isolates may suggest a defect outside of the laccase system. Also, since laccase is normally transported to the cell wall and secreted by C. neoformans (48), the albino isolates could have a defect in transportation and/or secretion of the enzyme that would interfere with its ability to polymerize melanin on the cell wall. Isolates of C. neoformans have been shown to vary in their capacity to utilize different indole compounds to produce melanin (24). It is possible that the albino isolates could melanize in the presence of a substrate other than the L-DOPA indolic compound used in this study. Though unlikely, the albino strains may have defects in catecholamine transport.
In contrast to other reported melanin-deficient mutants (23), the albino isolates had the capacity for survival at human body temperatures. The cell sizes in the study varied from 5.5 to 10.5 µm and the size of capsules from 7.0 to 13.9 µm, which clearly demonstrates that there is substantial strain-to-strain variation in these characteristics. Since the albino and pigmented strains were different, it is therefore not surprising that there are differences in their sizes. Furthermore, melanin and capsule are discordantly regulated (20). Although standard MIC susceptibility testing did not show any differences between the strains, the strains that produced melanin in the presence of L-DOPA were significantly more resistant to killing by AMB than the albino isolates. This finding is consistent with prior publications, reporting that time-kill experiments reveal that C. neoformans melanization is protective against AMB (18, 41, 42). Melanotic C. neoformans strains have been reported to be more virulent in animal models than melanin-lacking strains (23). We similarly have shown that the melanin-producing strains isolated from our patients were more virulent than the albino strains. Additionally, the fungal burden and pulmonary inflammation were significantly reduced early after infection with the albino strain compared to the melanin-producing isolate. In mixed infections, the albino isolate was cleared more rapidly than the pigment-producing strain.
The findings in this study are in agreement with prior work showing that melanin production is protective in C. neoformans yeast cells during infection. As demonstrated by genetic analysis, the isolates from the three individuals were all distinct. The clinical importance of albino strains of C. neoformans alone or in mixed cryptococcal infections is not clear. The actual incidence of mixed infections is also unknown. Future studies that critically examine large numbers of primary cultures of C. neoformans from patients for phenotypic differences may clarify this issue. Continued surveillance of primary isolates from patients with cryptococcosis by analyzing phenotypic differences and by molecular methods may reveal that mixed infections occur more commonly than is currently realized.
We thank W. Meyer (Sydney, Australia) for assistance with genotyping and P. Gialanella (Montefiore Medical Center, Bronx, NY) for his expertise with the VITEK.
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