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Journal of Clinical Microbiology, October 2006, p. 3680-3685, Vol. 44, No. 10
0095-1137/06/$08.00+0 doi:10.1128/JCM.02078-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Pathology,1 Department of Clinical Epidemiology and Biostatistics, VU University Medical Center, Amsterdam, The Netherlands,2 Digene Corporation, Gaithersburg, Maryland3
Received 4 October 2005/ Returned for modification 6 December 2005/ Accepted 6 August 2006
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CIN3), the hc2-RCS scored 97% (31/32) of samples positive, versus 91% (29/32) by GP5+/6+ PCR-EIA. However, this difference was not significant (P = 0.25). After increasing the hc2-RCS cutoff from 1.0 to 2.0 relative light units/cutoff value of the HPV16 calibrator (RLU/CO), no additional CIN3 lesions were missed by hc2-RCS, but the number of test-positive women with normal, borderline, or mild dyskaryosis was significantly decreased (P < 0.0005). However, at this RLU/CO, the difference in test positivity between hc2-RCS and the GP5+/6+ PCR-EIA was still significant (P = 0.02). The use of an RLU/CO value of 3.0 revealed no significant difference between hc2-RCS and GP5+/6+ PCR-EIA results, and equal numbers of smears classified as
CIN3 (i.e., 29/32) were detected by both methods. In summary, both assays perform very well for the detection of
CIN3 in a population-based cervical screening setting. However, adjustment of the hc2-RCS threshold to an RLU/CO value of 2.0 or 3.0 seems to produce an improved balance between the clinical sensitivity and specificity for
CIN3 in population-based cervical screening. |
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However, only a limited number of assays that detect DNA of hrHPV types as a pool have proven to be of clinical value in longitudinal studies involving large cohorts of women. One of these involves the commercially available, FDA-approved hybrid capture 2 (hc2) test. This assay is based on the hybridization of target DNA with a cocktail of full-length RNA probes of 13 hrHPV types, which has an analytical sensitivity of about 450,000 human papillomavirus (HPV) copies per cervical scrape suspension (26). Digene recently introduced a rapid capture system (RCS) allowing high-throughput hc2 testing for population screening in an automated format. The hc2-RCS is a programmable 96-well microplate processor that integrates liquid handling, plate handling, incubation, shaking, and washing via software specifically designed to run the hc2 assay.
Another clinically validated hrHPV detection assay involves the hrHPV GP5+/6+ PCR-EIA, which tests for 14 hrHPV types in one assay in which PCR products are ultimately hybridized to a mixture of specific oligonucleotides. The application of the GP5+/6+ PCR-EIA assay on crude extracts has an analytical sensitivity which is estimated to be in the range of about 1,000 HPV copies per cervical scrape, with variations of about 10-fold, depending on the HPV type (24, 27). This assay has the advantage that direct genotyping is possible on the hrHPV-specific PCR products by reverse line blot analysis (27). Both hc2 and GP5+/6+ PCR show good to excellent interlaboratory reproducibility (8, 14). Despite their good clinical performances in terms of sensitivity and specificity in detecting cervical intraepithelial neoplasia grade 3 lesions or cervical cancer (
CIN3) (5, 17, 20-22), the two methods have not been directly compared in large population-based studies. This is of particular importance, since there is now compelling evidence that there exists a differential risk posed by the different hrHPV types for cervical cancer (1, 4, 15). These findings ask for HPV typing as a follow-up test to distinguish those hrHPV-positive women that would benefit from more aggressive management on the basis of the HPV type present. Therefore, when hrHPV testing would be implemented in screening programs, the advantages of the hc2-RCS (i.e., high-throughput and automated handling) and GP5+/6 PCR (i.e., easy genotyping) assays could be combined in a combination test in which hc2-RCS is applied first and then GP5+/6+ PCR genotyping as a reflex test on hc2-RCS-positive samples.
This cross-sectional study involved a two-way comparison of the hc2-RCS and GP5+/6+ PCR hrHPV test on cervical scrapings in relation to the cytological results and histological outcome, the latter for women referred for colposcopy because of a cytology reading of moderate dyskaryosis or worse. To that end, cervical scrape specimens from 8,132 women that participated in an extension of a population-based screening (i.e., POBASCAM [5]) trial were analyzed by both methods. To ultimately explain discrepant test results between hc2-RCS and GP5+/6+ PCR, a further comprehensive analysis was performed involving possible PCR inhibition and viral parameters, such as viral type distribution and viral load.
Although the hc2-RCS test showed an overall higher positivity rate than the GP5+/6+ PCR-EIA, particularly cervical scrape specimens classified as normal, borderline, or mild dyskaryosis, adjustment of the hc2 cutoff point resulted in similar positivity rates for both methods. These results suggest that the clinical performances (i.e., clinical sensitivity and specificity for
CIN3) of both methods can be compatible, which is of importance when viral typing by GP5+/6+ PCR is envisaged as a follow-up test for hc2-RCS-positive women.
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Cervical smears were taken using a Cervex brush or a cytobrush. After a conventional smear was made for cytological examination, the brush was placed in a vial containing 5 ml universal collection medium (UCM) (Digene Corporation) for hrHPV testing. Upon arrival in the testing laboratory, cervical samples were concentrated to 1 ml UCM by centrifugation of vials for 10 min at 4,000 x g, and 4 ml UCM supernatant was discarded. The pellet was resuspended in 1 ml UCM and stored at 80°C until use.
Cytomorphological analysis was performed according to the CISOE-A classification, which can be translated easily to the Bethesda 2001 classification (3). Briefly, smears were classified as inadequate, normal, borderline dyskaryosis, mild dyskaryosis, moderate dyskaryosis, severe dyskaryosis, suspected of carcinoma in situ, or suspected of invasive cancer. In the Bethesda classification, 2001 borderline/mild dyskaryosis equals ASC-US/ASC-H/LSIL, and moderate and severe dyskaryosis and suspected of carcinoma in situ are equal to high-grade squamous intraepithelial lesion (3, 25).
Women with cervical smears classified as moderate dyskaryosis or worse (high-grade squamous intraepithelial lesion according to the Bethesda classification) were immediately referred to the gynecologist for colposcopy-directed biopsy, and histological data for these women were used in this study. Biopsies were histologically classified as no CIN, CIN 1, 2, or 3, or cervical carcinoma. Histological follow-up data were retrieved from the Nationwide Pathology register.
Hc2-RCS.
Hc2 was performed using the High-Risk HPV DNA test executed on the RCS. This test detects 13 hrHPV types (i.e., HPV16, -18, -31, -33, -35, -39, -45, -51, -52, -56, -58, -59, and -68). For hc2-RCS testing, 500 µl of UCM sample was mixed with 75 µl of guanidine-hydrochloride (8 M) and 250 µl denaturation reagent with indicator dye, briefly shaken, and denaturated for 45 min at 65°C. The samples were further processed on the RCS according to the recommendations of the manufacturer (Digene Corporation). Ultimately, of each denaturated sample, 75 µl was used for testing. Samples with relative light unit per cutoff value (RLU/CO) of
1 were initially scored hc2 positive.
HPV PCR testing. Sample material was prepared for GP5+/6+ PCR testing as follows: 150 µl UCM sample material was centrifuged for 10 min at 4,000 x g, and the pellet was resuspended in 1 ml Tris-HCl (pH 8.0). DNA was released after "freezing and boiling" of this 1-ml sample, and subsequently, 10 µl of this sample material was used as input in the PCR. The GP5+/6+ PCR and subsequent EIA readout system using a probe cocktail of 14 h-HPV types (i.e., HPV16, -18, -31, -33, -35, -39, -45, -51, -52, -56, -58, -59, -66, and -68) were performed essentially as described previously (27). The cutoff value of the GP5+/6+ PCR-EIA was calculated as three times the average EIA value of four negative blanks that are included in each PCR run. Reverse line blot was used to genotype HPV-positive samples, which can detect up to 27 additional HPV types besides the above-mentioned 14 hrHPV types (27).
Type-specific HPV E7 PCR was performed as described previously (29) for the following types: HPV16, -18, -31, -33, -35, -39, -45, -51, -52, -56, -58, -59, -66, and -68.
HPV 16 DNA load assessment. Quantification of HPV16 type-specific DNA load and the amount of cells in a scrape sample was performed by real-time PCR using the LightCycler instrument (13, 23). Viral load assessment was performed on a subset of samples that were GP5+/6+ PCR positive for HPV16 that revealed either a hc2-RCS negative (n = 11) or hc2-RCS positive (n = 12) test result.
Statistics. For comparison of the positivity rates of hc2-RCS and GP5+/6+ PCR and their relation to cytologic and histologic parameters, the McNemar test was used. The agreement was determined using the kappa value. To determine whether differences in performance of hc2-RCS and GP5+/6+ PCR can be attributed to assay threshold differences, the receiver operator characteristics curve (i.e., ROC curve) was computed for the semiquantitative hc2-RCS using moderate dyskaryosis or worse as the outcome measure. All HPV16 load values obtained by real-time PCR were log normalized. For baseline parameters, we computed median and range to describe the variety in the measurements. One-way analysis-of-variance (ANOVA) analysis was used to compare the mean HPV16 and ß-globin loads between the hc2-negative and the hc2-positive groups. P values of 0.05 or less were considered statistically significant. All analyses were performed using SPSS 11.5 software.
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TABLE 1. GP5+/6+ PCR and hc2-RCS test results
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TABLE 2. GP5+/6+ PCR and hc2-RCS results in relation to cytology
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FIG. 1. ROC curve for hc2-RCS using the cytology threshold of moderate dyskaryosis or worse. Positivity rates of hc2-RCS for smears representing moderate dyskaryosis or worse were plotted versus "1 negativity rate" of the hc2-RCS test for normal, borderline, or mild dyskaryosis for increasing threshold values of the hc2-RCS test. The area under the curve was 0.976. The "x" indicates the hc2-RCS threshold value of 1.0 RLU/CO. The "o" marks the point for the GP5+/6+ PCR-EIA positivity and negativity values (i.e., 88.3% and 95.8%, respectively), which equals an hc2-RCS threshold value of 3.2 RLU/CO.
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CIN3 cases positive and GP5+/6+ PCR two fewer cases, resulting in sensitivities for
CIN3 of 97% (95% confidence interval, 93.8 to 100%) and 91% (95% confidence interval, 85.1 to 95.8), respectively. However, this difference was not statistically significant (P = 0.25). |
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TABLE 3. GP5+/6+ PCR and hc2-RCS results in relation to histologya
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CIN3 remained the same as at 1.0 RLU/CO, whereas a significant reduction in test positivity was obtained for women with normal, borderline, or mild dyskaryosis (i.e., 4.7% versus 6.3% at 1.0 RLU/CO; McNemar P < 0.0005) (Table 4). Nevertheless, at an RLU/CO value of 2.0, hc2-RCS positivity among women with normal, borderline, or mild dyskaryosis was still significantly higher than that with GP5+/6+ PCR (McNemar, P = 0.02). With use of an RLU/CO value of 3.0, the hc2-RCS positivity rate for women with normal, borderline, or mild dyskaryosis was no longer significantly different from that of the GP5+/6+ PCR (4.2% versus 4.3%; McNemar P = 0.76), while both tests scored the same number of women with
CIN3 positive. |
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TABLE 4. Positivity rates of GP5+/6+ PCR and hc2-RCS at different RLU/CO thresholds in relation to cytology and histologically confirmed CIN3
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To further explain the occurrence of hc2-RCS-positive, GP5+/6+ PCR-negative cases, we addressed the influence of other potential possibilities: (i) false-negative GP5+/6+ PCR result owing to (a) inadequate crude samples for PCR due to the presence of PCR inhibitors or (b) viral integration events disrupting the GP5+/6+ PCR primer binding region in L1; (ii) false-positive hc2-RCS results owing to cross-reactivity of the hc2-RCS with other HPV types.
In order to address the first possibility, all 197 GP5+/6+ PCR-EIA negative, hc2-RCS-positive samples were retested by ß-globin PCR. Only 11 (5.6%) of these samples tested negative and therefore can be considered invalid for PCR. Of the three CIN3 cases that tested negative by GP5+/6+ PCR, one case, which was also negative by hc2-RCS, was inadequate for PCR testing on the crude extract due to inhibition of the PCR. This sample, however, revealed HPV16 positivity by GP5+/6+ PCR after DNA extraction.
To determine possible integration of the HPV genome in the GP5+/6+ primer region, type-specific E7 PCR was performed on the crude extracts of the other two GP5+/6+ PCR-negative
CIN3 cases that were hc2-RCS positive. Both tested positive by E7 PCR and are likely to contain integrated virus with disrupted L1. These included one case containing HPV16 and one case with HPV18.
Of the remaining 186 samples that were ß-globin PCR positive, the GP5+/6+ PCR was repeated, and PCR products were subjected to overall HPV typing by reverse line blotting to determine the level of cross-reactivity of the hc2-RCS test. A total of 35 (17.8%) samples were found to contain HPV types not present in the hc2-RCS probe (Table 5). Most of these cases fell in the category of normal cytology. The level of cross-reactivity of GP5+/6+ PCR could not be determined in this study, since hc2-RCS is unable to determine the HPV genotype of an infection.
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TABLE 5. Potential cross-reactivities of the hc2-RCS probe with other HPV types
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TABLE 6. Distribution of HPV types in GP5+/6+ PCR-positive but hc2-RCS-negative cases
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Differences in performances of hc2-RCS and GP5+/6+ PCR could mainly be explained by differences in assay thresholds. Still, the higher positivity rate of the hc2-RCS at an RLU/CO value of 1.0 compared to that of the GP5+/6+ PCR in our study is somewhat surprising, given the lower analytical sensitivity of the hc2 assay. The latter was supported by higher viral load values in HPV16 PCR-positive samples that were also hc2/RCS positive than in those that were hc2-RCS negative. However, we collected evidence that part of the hc2-RCS positivity in GP5+/6+ PCR-negative samples can be attributed to some cross-reactivity of the hc2-RCS assay with HPV types that are not covered by the probes of the hc2-RCS test. Similar results have been obtained in other studies (6, 12). A much smaller proportion of hc2-RCS-positive/GP5+/6+ PCR-negative samples could be explained by PCR failures due to PCR inhibitors in the crude extracts, while the presence of integrated viral DNA with a disrupted GP5+/6+ region is likely to be a rare event that only occasionally may occur in high-grade lesions. A major part of hc2-RCS-positive/GP5+/6+ PCR-negative test results, which mainly involved scrapings from women with normal, borderline, or mild dyskaryosis and weakly positive hc2/RCS values, is likely to reflect a certain level of background noise when the hc2-RCS assay is applied at an RLU/CO value of 1.0. However, our data indicate that a more optimal signal-to-noise ratio of the hc2-RCS method can be obtained by adjusting the threshold of this assay to levels at which the results of this test better match those of GP5+/6+ PCR. Moreover, since an interlaboratory reproducibility evaluation by Castle et al. (2004) revealed that the reproducibility of an hc2-positive test is lowest for women with normal cytology, particularly those with RLU/CO values between 1 and 3, adjustment of the hc2 thresholds is likely to also increase the reproducibility of the assay (8).
Our results seem to contradict the findings of Kulmala et al. (2004), who detected a higher positivity rate with GP5+/6+ PCR than with the manual hc2 assay (i.e., 33.8% and 27.9%, respectively). This difference may be explained by the fact that their study population generally involved younger women displaying a much higher HPV prevalence rate that may have masked the potential hc2 noise. On the other hand, the overall hc2-RCS positivity rate (i.e., 6.8%) in our study is in the same range as that obtained with the manual hc2 in the HART study (i.e., 7.6%), which involved women of a population-based screening cohort with a similar age distribution (10).
In this study a threshold of 2.0 RLU/CO for the hc2-RCS test would result in an increased clinical specificity for women with
CIN3, while no additional lesions
CIN3 were missed. Therefore, in case the hc2 is used as a primary screening tool, we, like others (7, 10), feel that the assay threshold easily can be increased to 2.0 RLU/CO, since this would result in a higher specificity, thereby minimizing the unnecessary follow-up of women with transient infection. Alternatively, when genotyping by GP5+/6+ PCR is envisaged as a reflex test for hc2-RCS-positive women without cytological abnormalities, adaptation of the hc2-RCS cutoff is less crucial, since in that scenario, the cutoff of the GP5+/6+ PCR assay would be decisive for further management. Still, it should be realized that definitive figures about clinical sensitivity and specificity for
CIN3 (24) and consequently the clinically most informative RLU/CO threshold can be calculated only when all follow-up information on women with normal, borderline, or mild dyskaryosis has been gathered.
Conversely, Ordi et al. (19) advocated the use of 1.0 RLU/CO, since their data showed that increasing the cutoff level would not lead to an increase in specificity. However, the women in their study were selected on the basis of cytological abnormality (ASC-US or worse). For such a high-risk population, specificity is rather low regardless of which cutoff level is used. We even feel that in case the hc2-RCS cutoff is increased to 2.0 or 3.0 RLU/CO, the clinical specificity of hrHPV testing for
CIN3 still needs improvement, since a substantial number of women that score hc2 positive at these cutoff values do not have or develop
CIN3. This may be achieved by further stratifying HPV-positive women by genotyping (4), viral load assessment (11, 28) and/or analysis of the presence of E6/E7 mRNA (9).
Most importantly, when sensitivity and specificity to detect lesions
CIN3 are considered equally important aspects of overall accuracy, both assays studied herein are similarly accurate, provided that the hc2-RCS cutoff is slightly adapted. For primary and secondary screening, this opens possibilities for a combination test of hc2-RCS and GP5+/6+ PCR, in which the hc2-RCS test, being easy and robust and therefore an ideal tool for application in large screening programs, is used first and the GP5+/6+ PCR as a reflex test (i.e., testing only of hc2-RCS-positive samples) for genotyping of hc2-RCS-positive women. The latter assay requires special skills and a more stringent infrastructure to reduce PCR-related contamination risks and therefore preferably should be performed in well-equipped, specialized centers.
Furthermore, we gratefully acknowledge the work of the 242 general practitioners and their assistants, the cytotechnologists and administrators from the four regional laboratories (i.e., Spaarne Ziekenhuis, Heemstede; Stichting PA Laboratorium Kennemerland, Haarlem; and Leiden Cytology and Pathology Laboratory, Leiden), and the cytotechnologists and molecular technicians of the pathology department of VU University Medical Center, Medial Haarlem, the District Health Authority Amstelveen, and PALGA for their work and support in this study.
Finally, we thank Susan Keese of Digene Corporation for making UCM, hc2 kits, and the rapid capture system available to us.
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