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Journal of Clinical Microbiology, December 2006, p. 4363-4370, Vol. 44, No. 12
0095-1137/06/$08.00+0 doi:10.1128/JCM.00680-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
G. Mackereth,1
M. Hansen,1
S. Humphrey,1
P. Short,2
T. Taylor,3
J. Swingler,3
C. E. Dawson,4
A. M. Whatmore,4
E. Stubberfield,4
L. L. Perrett,4 and
G. Simmons5
Investigation and Diagnostic Centre, Biosecurity New Zealand, Ministry of Agriculture and Forestry, Ward St., Wallaceville, New Zealand,1 Institute of Environmental Science and Research, Ltd., Kenepuru Science Centre, 34 Kenepuru Dr., Porirua, New Zealand,2 Australian Animal Health Laboratory, Geelong, Victoria, Australia,3 Veterinary Laboratories Agency, New Haw, Addlestone, Surrey KT15 3NB, United Kingdom,4 Auckland Regional Public Health Service, Auckland, New Zealand5
Received 30 March 2006/ Returned for modification 11 June 2006/ Accepted 17 September 2006
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There are only two reports in the literature of humans infected with marine mammal strains of Brucella. One report was of a laboratory worker who displayed symptoms consistent with brucellosis (4). The infection was confirmed by a positive serological response, isolation, and PCR-restriction fragment length polymorphism (RFLP) identification of a marine Brucella strain. Two patients originating from Peru and diagnosed with neurobrucellosis were also confirmed to be infected with marine mammal strains of Brucella by isolation, PCR, and DNA sequencing (41). The two Peruvian patients were not laboratory workers, and the infection was naturally acquired.
Serological evidence and isolation of brucellae have been reported from a variety of marine mammals on numerous occasions from locations in the northern hemisphere. The serological prevalence ranges from 0 to 38% for cetaceans, pinnipeds, and mustelids (6, 24, 26, 29, 32, 34, 43). The largest studies of 1,855 pinnipeds from North America and 1,386 pinnipeds and cetaceans from the North Atlantic Ocean revealed 3.1 and 8.2%, respectively, to have serological evidence of brucella (33, 43). Brucella have also been isolated from 31% (54/175) of marine mammals sampled under a variety of circumstances (8, 14, 17, 19, 23, 29, 31, 40, 43, 44). There are few reports of serological testing of pinnipeds and cetaceans from the Southern Hemisphere. In the Antarctic, positive reactions were detected in 3.5% (6/17) of pinnipeds (36). A high prevalence of serological reactions (55.2% [32/58]) was reported in cetaceans off the coast of central Peru (45). In pinnipeds of Australia, serological reactions were reported in three species, including 75% (9/12) of sea lions (Neophoca cinerea) (13). In New Zealand, no serological reactions were detected in 101 New Zealand sea lions (Arctocephalus hookeri) (28).
Brucella species isolated in New Zealand include B. ovis from sheep and deer, B. abortus (eradicated from livestock in 1989), and B. melitensis and B. suis (both from human patients). Infection of humans with the latter two species was confirmed as having been acquired overseas (7, 39). Hitherto, marine mammal Brucella strains had not been isolated in New Zealand. However, serum and tissue samples of stranded Hector's dolphins (Cephalorhynchus hectori) tested at our laboratory, the Investigation and Diagnostic Centre (IDC), have revealed serological and molecular evidence of brucella infection (unpublished data).
The present study describes the phenotypic and molecular characterization of a strain of Brucella isolated from a New Zealand patient that is most closely related to isolates previously identified from marine mammals.
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TABLE 1. Results of brucella serology tests performed on samples from the patient at two New Zealand medical laboratories (W and M)
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Brucella isolates. The Brucella species examined in the present study were B. abortus bv. 2 (Australian Animal Health Laboratory), B. abortus bv. 3 (Central Animal Health Laboratory, New Zealand strain Tulya), B. abortus bv. 9 (CAHL strain C68), B. ovis (AgResearch; NZ00/1614), B. canis (ATCC 23365), B. suis bv. 3 (AAHL), and B. melitensis bv. 2 (Environmental Science and Research, Ltd.; NZ02/820). Eight Brucella spp. of marine origin (UK1/03 and UK39/94 isolated from common seals [Phoca vitulina]; UK61/94 isolated from a gray seal [Halichoerus grypus]; UK9/02 and 36/94, both isolated from harbor porpoises [Phocoena phocoena]; F5/99 isolated from a bottlenose dolphin [Tursiops truncatus United States], UK22/00 isolated from a white-sided dolphin [Lagenorphynchus acutus] and 59/94 isolated from a striped dolphin [Stenella coeruleoalba]) were all supplied by the VLA.
Culture. All brucella isolates were stored at 70°C on cryobeads. The isolates were resuscitated using brucella enrichment broth (Farrells medium) and incubated at 37°C for 3 to 7 days. The broths were subcultured onto serum dextrose agar and chocolate blood agar and incubated at 37°C in O2 and CO2 (1, 28).
Phenotypic testing. Phenotypic testing was performed in our laboratory (IDC) using standard conventional tests for brucella (1, 30). This included growth requirements, biochemical tests, dye sensitivity, serotyping, and phage typing.
PCR, RFLP, and DNA sequencing. DNA was extracted from the brucella isolates by using the QIAMP DNA minikit (QIAGEN, Hilden, Germany), according to the manufacturer's instructions. The genetic targets for molecular characterization were the omp31 gene (differentiation of B. abortus); the IS711 element downstream of bp26 (differentiation of "terrestrial" and "marine" strains); the genes omp25, -2a and -2b; IS711; housekeeping genes; and specific IRS-PCR DNA fragments (differentiation of species).
The omp25 gene fragment was initially amplified and sequenced using oligonucleotides designed in-house (IDC). A 50-µl PCR mixture contained 1x PCR buffer (Roche, Basal, Switzerland), 2.5 U of Taq polymerase (Roche, Basal, Switzerland), 0.2 mM deoxynucleoside triphosphate, 0.5 mM MgCl2, 500 ng of forward primer BC1-GTTGAAGTAGCTCCCCAGTA (nucleotide position 109 of GenBank submission BMU33003) and 500 ng of reverse primer BC2-ACTGGGTGTAACGGTACTCA (position 431 BMU33003), and 5 µl of genomic DNA. The PCR was conducted in a Mastercycler gradient (Eppendorf, Hamburg, Germany) or an MJ Research Minicycler (Bio-Rad, Waltham, MA) with a denaturation step of 96°C for 60 s; followed by 30 cycles of 96°C for 40 s, 60°C for 60 s, and 72°C for 60 s; and with a final extension step of 72°C for 5 min. The PCR product was purified and sent to the University of Waikato (New Zealand) for sequencing. Chromatograms were checked for miscalls, and the identity of the DNA sequences was analyzed by comparison to DNA sequences within GenBank using BLASTN (2; http://www.ncbi.nlm.nih.gov/BLAST).
The omp25 gene was later amplified using the primers 25A and 25B that encompassed the in-house designed primers and provided additional single nucleotide polymorphisms for RFLP testing and DNA sequencing (11). A 50-µl PCR mixture contained 1x HotStar master mix (QIAGEN), 0.1 µM concentrations of each primer, and 5 µl of genomic DNA. The PCR was conducted with a denaturation step at 95°C for 15 min; followed by 35 cycles of 95°C for 1 min, 58°C for 2 min, and 70°C for 3 min; followed by a final extension step of 70°C for 10 min. The amplified fragment was digested with EcoRV. A 20-µl digestion reaction contained 5 µl of DNA, 10 U of enzyme (New England Biolabs, Beverly, MA; Promega Corp., Madison, WI), 100 µg of bovine serum albumin, and the corresponding 1x buffer for at least 3 h at 37°C in a water bath. Digests were electrophoresed in a 3% agarose gel in 1x TAE (40 mM Tris-acetate-2 mM EDTA).
The bp26 gene and downstream IS711 element was amplified using the primers 26A and 26B (9). The reaction mixture was as described for the second omp25 PCR. The PCR was conducted with a denaturation step of 95°C for 15 min; followed by 35 cycles of denaturation at 94°C for 30 s, annealing at 58°C for 60 s, and extension at 72°C for 60 s; followed by a hold at 72°C for 5 min.
The omp31 gene was amplified using the primers 31sd and 31ter (46). The reaction mixture and cycling parameters were as described for the bp26 PCR.
The omp2a gene was amplified using the primers 2aA and 2aB (11). The reaction mixture and cycling parameters were as described above for the second omp25 PCR. The amplified DNA was digested by using four restriction endonucleases: HinfI, PstI, AluI, and BanI. The digestion mixture and incubation was as described for the omp25 digestion.
The omp2b gene was amplified using the primers 2bA and 2bB and the conditions described previously (11). The amplified DNA was digested by using six restriction endonucleases: BglII, EcoRI, HaeIII, HinfI, KpnI, and TaqI.
The omp2a and -2b PCR products from 02/611 and F5/99 were sent to Monash University (Australia) for sequencing. After editing and compilation of the contigs, the omp2a and -2b DNA sequences were phylogenetically analyzed by creating a phylogram from a neighbor-joined consensus tree of Kimura distance matrices created from 500 bootstraps of the CLUSTAL W aligned sequences (16, 42) (BioManager by ANGIS [http://www.angis.org.au]; TreeView [Win32]; http://taxonomy.zoology.gla.ac.uk/rod/rod.html).
For the IS711 RFLP analysis, genomic DNA was digested with EcoRI (5). Digested DNA was separated on 0.8% agarose gels and Southern blotted by using a vacuum method. The membrane-bound DNA was probed using a digoxigenin (DIG)-labeled IS711 probe, and the hybridized probe was detected using anti-DIG monoclonal antibodies. The membrane was immersed in CSPD chemiluminescence substrate to allow visualization of the probe hybridization by exposure to X-ray film. The resulting images were analyzed by using Bionumerics software (Applied Maths, Belgium), and a dendrogram analysis of the profiles was produced using the coefficient of Jaccard to calculate similarities between the fingerprint patterns.
Isolate 02/611 was also characterized by using a multilocus sequence typing approach currently under development at the VLA (A. M. Whatmore, L. L. Perrett, and A. P. Macmillan, submitted for publication). Fragments of six genes (dnaK, gyrB, glK, trpE, cobQ, and omp25) were amplified by PCR using a proofreading polymerase and sequenced from either end. The sequences obtained were compared to a database of equivalent sequences from 200 strains representing all known Brucella species and biovars.
The IRS-PCR fragments were amplified using the primer pairs I1/I2 (PCR I), III1/III2 (PCR III), and IV1/IV2 (PCR IV) (10). The reaction mixture was the same as described for the second omp25 PCR. The PCR was conducted with a hold step at 95°C for 15 min; followed by 40 cycles of 95°C for 1 min, 62°C for 2 min, and 72°C for 2 min; followed by a final hold at 72°C for 10 min.
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TABLE 2. Comparison of biochemical, serotyping, phage typing, growth in the presence of dyes, and other growth requirements of the brucella isolate 02/611 from four laboratories with results reported in the literature for marine isolates of brucellaa
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Molecular characterization. At the time of the submission of isolate 02/611, brucella isolates were routinely tested in our laboratory (IDC) using the in-house designed omp25 PCR, and sequencing BlastN analysis conducted in April 2002 of the partial DNA sequence from the forward primer (BC1) revealed that the isolate was most closely related to the following Brucella spp. (no. of matching nucleotides): B. suis (398/403), B. melitensis (398/403), B. abortus (398/403), B. neotomae (398/403), B. ovis (397/403), and B. canis (396/404). The E value was 0 for each Brucella spp. The next lowest value was 1e-126 for Ochrobacterum anthropi. Reference laboratory D returned an identification of B. suis biovar 5 using molecular tests; however, details on the methodology were not forthcoming from this laboratory.
Further molecular characterization was undertaken in our laboratory (IDC), including an updated BLASTN analysis conducted in June 2005. omp25 sequences from marine isolates of brucella were submitted to GenBank in September 2004. The latter BLASTN analysis of the compiled sequence obtained with the forward and reverse primers (25A and 25B) now revealed 02/611 to be a 100% match (642/642 nucleotides) to B. cetaceae accession numbers AY484523 and AY484520 and B. pinnipediae accession number AY484522.
The omp25 PCR amplified a 700-bp DNA fragment from all Brucella spp., and upon digestion with EcoRV, only the B. melitensis isolate remained uncut. Isolate 02/611 produced a P1 pattern (11).
The bp26 PCR amplified a 1,900-bp fragment from brucella isolates from marine mammals, including pinnipeds and cetaceans, and a smaller fragment of 1,029 bp was amplified from brucella isolates from terrestrial animals. The amplified fragment from isolate 02/611 corresponded in size to the marine mammal isolates of brucella.
The omp31 PCR amplified 900 bp from all Brucella spp. tested (including isolate 02/611) with the exception of B. abortus.
Products of 1,230 bp were produced upon amplification of the omp2a and omp2b genes of all species of Brucella. The RFLP patterns produced after restriction digestion of omp2a are shown in Fig. 1. The omp2a RFLP pattern produced by the human isolate 02/611 matched the RFLP patterns produced by the isolate F5/99 originating from a bottlenose dolphin and the isolate UK1/03 originating from a common seal. The combined omp2a and -2b profile of RFLP patterns produced by 02/611 was identical to that produced by F5/99. All other Brucella spp. differed by at least one RFLP pattern.
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FIG. 1. Restriction digestion of omp2a PCR product with HinfI (A), PstI (B), AluI (C), and BanI (D). Lanes: 1, B. abortus bv. 2; 2, B. abortus bv. 9; 3, B. ovis; 4, B. canis; 5, B. suis bv. 3; 6, B. melitensis; 7, 02/611; 8, marine mammal brucella (seal UK1/03); 9, marine mammal brucella (porpoise UK9/02); 10, marine mammal brucella (United States bottlenose dolphin F5/99); 11, marine mammal brucella (striped dolphin UK59/94); 12, B. ovis; 13, VI marker (Boehringer-Mannheim).
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FIG. 2. Phylogram comparing the omp2a and -2b genes from 02/611 with the omp2a and -2b genes from marine and terrestrial isolates of brucella. Internal nodes are labeled with the percent bootstrap values.
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FIG. 3. IS711 fingerprint patterns of Brucella species tested in the present study.
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TABLE 3. Comparison of 02/611 sequences with B. suis and marine mammal brucella sequences showing all bases variable between the isolates
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Phenotypic reevaluation. Following the conflicting identification and results from follow-up molecular testing, reevaluation of the phenotypic profile for isolate 02/611 with repeat testing of L-arginine dihydrolase, L-lysine decarboxylase, and DL-ornithine decarboxylase revealed that it was consistent with the phenotypic results for marine brucella isolates reported in the literature (Table 1) (8, 14, 18, 19, 21, 25, 31, 44). In addition, isolate 02/611 produced the same phenotypic results as those reported for the brucella isolate from the United States bottlenose dolphin (13).
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Zoonotic disease of humans with brucella has been commonly associated with B. melitensis, B. abortus, B. suis, and B. canis. Given the reported rarity of infection of humans with marine mammal strains of Brucella, and the high-risk exposure to pigs within the incubation period of disease, it is not surprising that initial interpretation of the phenotypic results led to a preliminary identification of B. suis. After results were obtained from the molecular tests, a review of the phenotypic results found these consistent with identification of the isolate as a marine mammal strain of Brucella. Classification of marine mammal strains of Brucella as B. pinnipediae and B. cetaceae has been proposed as species originating from pinnipeds and cetaceans, respectively (12). These two species can generally be differentiated on the basis of CO2 dependency (B. pinnipediae) and metabolism of D-galactose (B. cetaceae) (20). The human isolate most closely resembled the isolate from the United States bottlenose dolphin, and both would be classified as B. cetaceae based on the phenotypic results. The phenotypic test results do not correlate with the results from the specific PCR test (I) and sequencing of the omp2a gene since both genotypic test results indicate that the human and bottlenose dolphin isolates are more closely related to B. pinnipediae than B. cetaceae. In addition, the variation in results obtained from repeat biochemical testing indicates that identification to the species level using phenotypic traits may not be reliable.
Restriction patterns of the PCR-amplified brucella omp2a gene of isolate (02/611) produced an overall pattern classification of I as described previously (12). Pattern I has been associated with isolates from a hooded seal (Cystophora cristata), a gray seal (Halichoerus grypus), 10 common seals, and an otter (Lutra lutra), whereas cetacean isolates have produced overall patterns classified as J or K (12). Restriction patterns of the PCR-amplified brucella omp2b gene of isolate 02/611 produced an overall pattern classification similar to O and P; however, an EcoRI pattern 3 was observed which has not been previously noted. Pattern O has been associated with two common seals, and pattern P has been associated with a hooded seal. Overall, patterns L, M, and N have been associated with cetacean isolates, including a bottlenose dolphin with a complete omp2a, opm2b profile as M-J. It is interesting that the overall patterns of the bottlenose dolphin (United States F5/99) tested in the present study also matched the I (O/P) profile. The omp2a and -2b genes are 85% homologous, and both the human isolate (02/611) and the bottlenose dolphin isolate (F5/99) were determined to have one omp2a gene and one omp2b gene. The majority of isolates from pinnipeds have also been found to contain one omp2a and one omp2b gene compared to the majority of isolates from cetaceans that have two omp2b genes (12).
The close relationship of isolate 02/611 and the marine mammal isolate F5/99 was supported by two other approaches. First, the two isolates shared an identical profile as determined by IS711 fingerprinting. Second, the isolates were identical to each other based on housekeeping gene sequence data, and the most closely related organisms are other marine mammal brucella. Thus, evidence from a variety of approaches supports the observation that the closest known relative of isolate 02/611 is an isolate originating from a marine mammal. The 02/611-F5/99 genotype has never been reported elsewhere, so we cannot be certain about its natural distribution and prevalence.
The results from the I, III, and IV PCR tests indicate that both the human isolate and the United States bottlenose dolphin are closely related to B. pinnipediae. The brucella isolates from the two Peruvian patients were found to be identical to a Brucella sp. originating from a common seal (41). The source of the brucella infection of the Peruvians was not identified. The origin of infection of the New Zealand patient is under investigation.
In the absence of evidence of contact with marine mammals, the investigation has focused on other possible infection pathways. Brucellae have been named for their pathogenicity and host preference, but it is possible for them to cross the species barrier (15, 17, 27, 38). Cattle and sheep have been experimentally infected with marine mammal strains of Brucella. An isolate from a Pacific harbor seal (Phoca vitulina richardsi) caused abortion in one-third of the infected cows (37). Diagnosis was based on histopathological changes, the isolation of brucella from the cows that aborted, and 100% seroconversion, albeit transient (37). In seropositive cows that did not abort, brucella was not isolated from a wide range of tissues, indicating that the infection was transient (37). Sheep inoculated with an isolate from a seal produced only low antibody levels that were also transient, with isolation of the Brucella strain from 1 of 16 aborted ewes and her fetus (35). Similarly, piglets inoculated with isolate 02/611 produced low and transient antibody levels in 3 of 10 piglets, with the other 7 not seroconverting (J. Bingham, unpublished data). The organism was isolated post mortem from the retropharyngeal and mandibular lymph nodes of three piglets. On initial investigation, pigs were implicated as the likely source of infection based on the presumptive identification of the isolate as B. suis and the patient's contact with pigs in the timeframe of infection. There was no serological evidence of infected pigs in trace herds (3). However, a low-prevalence transient antibody response probably would not have been detected. Further testing of pigs for Brucella spp. is being conducted. Lymph nodes (retropharyngeal, submaxillary, gastrohepatic, internal iliac, and inguinal) collected from 74 chopper pigs sent to an abattoir from 22 pig farms were pooled and tested in our laboratory (IDC) by the nested omp25 PCR for Brucella sp. All tested negative. The New Zealand patient was known to have eaten raw snapper. The two Peruvian patients were reported to have consumed unpasteurized cheese and raw shellfish, and it was speculated that the source of their infection with brucella may have been other than marine mammals (41).
This case highlights the need for follow-up testing of unusual phenotypic results of brucella isolates and proves that the molecular characterization techniques described in the literature are very useful tools for differentiating Brucella species. This case also reinforces earlier warnings that marine mammal strains of Brucella may be an emerging zoonotic disease, and consideration needs to be given to marine sources when brucella infections are being diagnosed.
Published ahead of print on 11 October 2006. ![]()
Present address: Tropical and Aquatic Animal Health Laboratory, 180-202 River Blvd., Townsville, Queensland, Australia. ![]()
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