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Journal of Clinical Microbiology, June 2006, p. 2032-2038, Vol. 44, No. 6
0095-1137/06/$08.00+0 doi:10.1128/JCM.00275-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Institute for Infectious Diseases, University Bern, CH-3010 Bern, Switzerland,1 Federal Office of Public Health, Bern, Switzerland,2 Department for Infectious Diseases, University Hospital Bern, Bern, Switzerland3
Received 8 February 2006/ Returned for modification 17 March 2006/ Accepted 27 March 2006
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The introduction of the 7-valent conjugated pneumococcal polysaccharide vaccine (PCV-7; serotypes 4, 6B, 9V, 14, 18C, 19F, and 23F) stresses the importance of surveillance of pneumococcal serotype-specific epidemiology. Replacement of vaccine serotypes with nonvaccine serotypes has been observed in several vaccine studies and also shortly after the introduction of universal vaccination of infants in the United States (16, 32).
A precise estimation of the prevalence of drug-resistant invasive S. pneumoniae isolates is hampered by the relatively low numbers of cases in young age groups. Therefore, in 1996, the Centers for Disease Control and Prevention recommended that nasopharyngeal isolates be used for the surveillance of pneumococcal resistance (6). This approach assumes that the serotype-specific epidemiology of invasive and colonizing pneumococci is largely comparable or at least correlated in a predictable manner. Few studies have compared the serotype distribution and antibiotic resistance prevalence of invasive and nasopharyngeal pneumococci (20, 21, 24, 26, 27). More recently, several studies have estimated the invasiveness of prevalent pneumococcal serotypes based on the relative serotype prevalence in invasive and colonizing isolates (1, 14, 28). Low numbers of pneumococcal isolates and/or a limited comparability of study groups from which invasive and noninvasive S. pneumoniae isolates were collected hampered a detailed analysis in many of these studies.
This study made use of two nationwide Swiss surveillance systems, one monitoring nasopharyngeal pneumococcal carriage and the other focusing on invasive pneumococcal disease. Invasive and colonizing S. pneumoniae isolates collected prospectively between January 2001 and December 2004 were compared with regard to their relative serotype distribution and antibiotic resistance prevalence. In addition, the relative invasiveness of pneumococcal serotypes was estimated as described previously by Brueggemann et al. (1, 2).
(Part of the data was presented at the Annual Assembly of the Swiss Society for Infectious Diseases, Basel, Switzerland, June 2005, and the Meningitis Research Foundation Conference, London, United Kingdom, November 2005.)
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Data on colonizing pneumococci were obtained from the Pneumococcal Resistance Study that is being conducted within the Swiss Sentinel System. This nationwide, ongoing, prospective pneumococcal surveillance study has been described in detail previously (25). In brief, nasopharyngeal swabs are collected from all outpatients who present with acute otitis media or pneumonia to practitioners participating in the sentinel network. S. pneumoniae is being cultured from the swabs at the Institute for Infectious Diseases, University of Bern, Bern, Switzerland, as previously described (25). In this study, data for nasopharyngeal isolates from January 2001 to December 2004 were included.
Serotyping and resistance testing were done for all invasive and colonizing bacterial isolates included in this study at the Institute for Infectious Diseases, University of Bern, Switzerland, as previously described for the colonizing isolates (25). In brief, capsular serotyping was done on all isolates by a Quellung reaction using antiserum from the Statens Serum Institute (Copenhagen, Denmark). All isolates were tested against oxacillin (1-µg disk), erythromycin, cotrimoxazole, and levofloxacin by the disk diffusion method. For isolates with reduced susceptibility to any of these four antibiotics, MICs were determined by use of the E test method (AB Biodisk) according to Clinical and Laboratory Standards Institute (CLSI) (formerly NCCLS) guidelines (7). Data on patients' age and gender were available for invasive and colonizing isolates, whereas patients' canton (state) of residence was derived from the sending laboratory's or sentinel physician's address. Also, for invasive isolates, the anatomical site of isolation was known.
Antibiotic consumption data. Data on outpatient antibiotic sales were provided by IMH-IMS Health Market Research and have partially been published previously (11). Defined daily doses (DDD) per 1,000 inhabitants daily were calculated using WHO standard doses and demographic information from the last census in 2000.
Statistical analysis. Serotype distribution was analyzed for invasive and colonizing isolates by age group and geographic region. For the purpose of geographic comparisons, Switzerland was divided into two regions, the French-speaking West and the remaining parts of the country (designated "other"), as described previously (25).
Serotype/serogroup-specific penicillin resistance was calculated as the proportion of penicillin-nonsusceptible S. pneumoniae (PNSP) isolates in each serotype/serogroup.
An odds ratio (OR) was calculated for the likelihood of an individual serotype/serogroup being isolated from a sterile site compared to merely colonizing a patient, as described previously (1). For the main analysis, all other serotypes/serogroups served as the reference group. For comparison with the literature, the analysis was repeated with serotype 14 as a fixed reference (2). Age and geographic region were added to the model as potential confounders.
Descriptive analysis, analysis of variance, and logistic regression analysis were performed using StatView (version 5.0; SAS Institute). Proportions were compared with the chi-square or Fisher's exact test as appropriate. A cutoff P value of
0.05 (two-tailed) was used for all statistical analyses.
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TABLE 1. Characteristics of 2,388 invasive pneumococcal isolates from the Swiss National Reference Center (March 2002 to December 2004) and 1,540 pneumococcal nasopharyngeal isolates from the Swiss Sentinel Surveillance Network (January 2001 to December 2004)
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Association of serotypes/serogroups with invasiveness. ORs were calculated for individual serotypes/serogroups in a logistic regression model adjusting for age and geographic region (Fig. 1). Serotypes 1 (OR, 2.9; 95% confidence interval [CI], 1.8 to 4.7), 4 (OR, 4.7; 95% CI, 2.7 to 8.1), 7F (OR, 6.2; 95% CI, 3.4 to 11.5), 8 (OR, 4.4; 95% CI, 2.2 to 8.7), 9V (OR, 2.4; 95% CI, 1.3 to 4.3), and 14 (OR, 3.0; 95% CI, 2.2 to 4.0) were significantly associated with invasive isolates (Fig. 1). These six serotypes contributed 43.1% of all invasive isolates compared to 12.9% of all colonizing isolates (P < 0.001). Serotype 14 was the most prominent invasive serotype, comprising 15.3% of invasive isolates, but it also belonged to the more prevalent colonizing serotypes (7% of all colonizing isolates). Serotypes 3 (OR, 0.4; 95% CI, 0.3 to 0.6), 7 (OR, 0.5; 95% CI, 0.3 to 0.95), 10 (OR, 0.5; 95% CI, 0.2 to 0.9), 11 (OR, 0.6; 95% CI, 0.3 to 0.95), 15 (OR, 0.4; 95% CI, 0.2 to 0.8), 19F (OR, 0.3; 95% CI, 0.2 to 0.4), and 23 (OR, 0.4; 95% CI, 0.2 to 0.9) were significantly associated with colonizing isolates (Fig. 1). Together, they contributed 42.5% of all colonizing isolates compared to 21.4% of all invasive isolates (P < 0.001).
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FIG. 1. ORs and 95% confidence intervals for the probability of S. pneumoniae being isolated from a normally sterile site compared to being isolated from the nasopharynx for different serotypes/serogroups adjusted for age and geographic region. The numbers in parentheses next to the serotypes/serogroups on the x axis indicate the number of isolates.
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Small numbers did not allow for an in-depth analysis of serotype-specific invasiveness among different age groups. However, the observed trends confirmed the findings of the overall analysis (data not shown).
Serotype/serogroup distribution by age and geographic region. The serotype distribution did not differ significantly between the age groups 0 to 1 and 2 to 4 years and between the age groups 5 to 16 and 17 to 64 years (data not shown), which were therefore pooled for further analysis. Figure 2 illustrates the distribution of serotypes/serogroups by age group and geographic region. The following associations were confirmed by multivariate analysis, adjusting for geographic region or age group (as appropriate) and colonizing versus invasive isolates (data not shown): (i) serotypes/serogroups 6 (P = 0.009), 6B (P < 0.001), 14 (P = 0.008), 15 (P = 0.003), 19F (P < 0.001), and 23F (P < 0.001) were most common among young children <5 years of age; (ii) serotypes/serogroups 1 (P < 0.001), 3 (P < 0.001), 7 (P = 0.01), 7F (P = 0.05), 8 (P = 0.001), 9 (P = 0.04), and 22 (P = 0.001) were more frequent among older children and adults; and (iii) serotypes/serogroups 9 (P = 0.05) and 19A (P = 0.02) prevailed in the western part of Switzerland, while serotypes 3 (P = 0.04) and 7F (P = 0.03) were more frequent in other areas.
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FIG. 2. Serotype/serogroup distribution of invasive (A and C) and colonizing (B and D) S. pneumoniae isolates by age group and geographic region. The numbers in parentheses next to the serotypes/serogroups on the x axis indicate the number of isolates.
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2 mg/liter), erythromycin, cotrimoxazole, and levofloxacin resistance were 12.1%, 1.0%, 13.2%, 18.9%, and 0.7%, respectively. PNSP isolates were significantly more frequent among colonizing isolates, while high-level resistance to levofloxacin and penicillin was more frequent among invasive isolates. These differences remained significant for high-level penicillin resistance and levofloxacin resistance after adjustment for age and geographic region (P = 0.04 for each antibiotic). Half (48.8%) of the isolates with high-level penicillin resistance belonged to serotype 14. Serotype distribution among levofloxacin-resistant isolates was more diverse (data not shown).
Serotype-specific PNSP proportions (serotype-specific resistance [SSR]) differed between serotypes/serogroups (Table 2). PNSP proportions were higher in serotypes/serogroups 5, 6A, 6B, 9, 9V, 14, 15, 19A, 19F, and 23F and nontypeable isolates.
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TABLE 2. Serotype/serogroup-specific penicillin resistance of invasive and colonizing S. pneumoniae isolates by geographic region
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SSR did not vary significantly by age group (data not shown). However, SSR proportions for serotypes 6B, 9V, 14, and 19F and nontypeable isolates were significantly higher in the West than in other geographic regions (Table 2). Interestingly, serotypes 6B, 9V, 14, and 19F belong to the five so-called pediatric serotypes.
Pediatric serotypes and vaccine coverage. The pediatric serotypes 6B, 9V, 14, 19F, and 23F were found more frequently among children <5 years of age (48.5%) and elderly patients (34.1%) than among patients between 5 and 64 years old (29.1%) (P < 0.001 for children <5 years old; P = 0.007 for elderly patients >64 years old) (Table 3). The proportions of pediatric serotypes did not differ significantly between the age groups 0 to 6 months (43.0%), 7 to 24 months (49.8%), and 25 to 48 months (46.8%). Also, pediatric serotypes did not occur more frequently among women of childbearing age (17 to <45 years old) than among men of the same age group (27.1% versus 28.9%, respectively). There was a trend towards a higher proportion of pediatric serotypes in the Western region (Table 3).
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TABLE 3. Risk factors for pneumococcal carriage or invasive disease with pediatric serotypes (6B, 9V, 14, 19F, and 23F) among 3,928 children and adults in Switzerland from 2001 to 2004
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The proportions of invasive (46.2%) and colonizing (48.3%) isolates covered by PCV-7 (excluding potentially cross-reacting serotypes) were relatively low but comparable. The proportions were higher among infants <2 years of age (65.1% for invasive and 56.1% for colonizing isolates) and children 2 to 4 years old (51.3% for invasive and 49.9% for colonizing isolates). Similar, albeit smaller, variations were found for the proportion of vaccine serotypes in different age groups and geographic regions. This is not unexpected, since five of the seven serotypes included in the vaccine belong to the pediatric serotypes.
Outpatient antibiotic consumption. Antibiotic consumption was higher in West Switzerland (12.4 to 13.0 DDD per 1,000 inhabitants daily) than in the rest of Switzerland (7.9 to 8.5 DDD per 1,000 inhabitants daily). In addition, cephalosporins were used more often in West Switzerland than in the rest of Switzerland (10.7 to 11.6% versus 6.8 to 7.1% of total antibiotic consumption). Total consumption rates as well as the relative distribution of different antibiotic classes were stable between 2002 and 2004 (Fig. 3).
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FIG. 3. Absolute (A) and relative (B) outpatient antibiotic consumption in DDD per 1,000 inhabitants per day in West Switzerland compared to the rest of Switzerland from 2002 to 2004.
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The present study also has some limitations. Epidemiological data related to study isolates were scarce, i.e., there was no information about comorbidities. Colonizing isolates were obtained from the nasopharynx of patients with acute respiratory tract infection and not from healthy persons. This may have influenced the serotype distribution. However, previous studies have shown no significant differences in the serotype distributions between children with acute respiratory tract infection and healthy children (1, 14, 30). Due to the design of the two surveillance programs that provided the study isolates, invasive and colonizing isolates differed significantly in their distribution by age and geographical location. However, the large number of strains included allowed us to control for potential confounders by multivariate analysis. Previous studies have analyzed the characteristics of individual clones within prevalent serotypes (1, 14, 28). In this study, the genetic population structure was obtained for only a small fraction of the study isolates (data not shown), which did not allow for a detailed analysis. However, the serotype/serogroup can still serve as a valid unit for analysis of the invasive potential of S. pneumoniae (16).
This study found a significant association of serotypes/serogroups 1, 4, 7F, 8, 9V, 12F, and 14 with invasive disease and an association of serotypes/serogroups 3, 6A, 7 (other than 7F), 10, 11, 15, 19F, 23 (other than 23F), and 38 with colonization. This corresponds with recent reports from other geographic regions (1, 2, 14, 28). There were some exceptions. Serotype 18C was associated with a higher invasive potential in studies from the United Kingdom, Sweden, and Finland (1, 14, 28), but this association could not be confirmed in this study despite a sufficient number of serotype 18C isolates. Similar to the findings by Brueggemann et al. (1, 2), the rare serotype 38 did not appear to exhibit an increased invasive potential as suggested previously by Hanage et al. (14). One likely explanation for this discrepancy could be that distinct clones of serotypes 18C and 38 circulate in Northern Europe. The characterization of serotypes/serogroups with high invasive potential is of epidemiological and public health importance. Pneumococcal serotypes/serogroups with a propensity for colonization are also relevant since they can cause high morbidity through upper respiratory tract infections such as acute otitis media. Surveillance should therefore include both colonizing and invasive pneumococcal strains.
Serotypes 1, 4, 7F, and 8, which have a high risk for invasiveness, had very low proportions of serotype-specific penicillin resistance. Low exposure to antibiotic selection pressure and reduced probability for the acquisition of resistance genes due to a short duration of colonization may explain this association. Serotype 3 had little resistance despite a propensity for colonization. A constitutively high level of expression of the polysaccharide capsule in serotype 3 may impede invasiveness and the acquisition of resistance genes during colonization (13, 31). Serotypes 14 and 9V have been associated with both invasive disease and antibiotic resistance. However, both serotypes are probably good invaders and colonizers, as described in this study and previous studies (1, 14, 28).
The relative serotype/serogroup distribution differed between invasive and colonizing S. pneumoniae isolates. Variations were due mostly to different rank orders of serotypes/serogroups rather than a vastly different composition. The differences in rank orders reflected the invasive or colonizing potential of individual serotypes/serogroups as described above. This is in accordance with findings of previous studies (20, 21, 26). The major discrepancies between colonizing and invasive pneumococci were related to serotypes 14, which predominated among invasive isolates, and 19F, which was the most frequent colonizing serotype. Since both serotypes were associated with penicillin resistance and since both serotypes are included in the 7-valent conjugated vaccine, neither the overall penicillin resistance nor the proportion of serotypes covered by the vaccine differed significantly between colonizing and invasive isolates. However, this balance could easily be disturbed by serotype redistribution, for instance, due to vaccine selection pressure. Therefore, colonizing isolates should only be used with caution to predict serotype distribution and resistance among invasive isolates.
Age-specific serotype/serogroup distribution of invasive S. pneumoniae isolates in this study corresponded well with findings in other European countries. The pediatric serotypes 6B, 9V, 14, 19F, and 23F predominated among the youngest age group, and serotypes 1, 3, 4, 7, 7F, 8, and 22 were relatively more prevalent after infancy (15). Serotype 3 accounted for a larger percentage of invasive disease among young children in Switzerland (13%) than in other European countries (maximum of 5 to 6%) (15). Serotype 3 has rarely been associated with antibiotic resistance. The high prevalence of serotype 3 may therefore reflect the relatively low antibiotic selection pressure in Switzerland, as discussed below.
The proportion of pediatric serotypes was higher among elderly persons than among middle-aged adults. Others have also observed this association. However, in this study, the proportion of pediatric serotypes among the elderly (34%) was considerably lower than that reported in previous reports from the United States (>44%), Scotland (58%), and Sweden (48%) (8, 10, 19, 23). Waning immunity with increasing age, antibiotic selection pressure, and increased exposure to pediatric serotypes have been discussed as possible explanations for the predominance of pediatric serotypes among the elderly population (10). All three factors probably play a role and act in concert. Here, as in the United States (10), the association of pediatric serotypes with old age was also preserved when the analysis was restricted to penicillin-susceptible isolates. This supports the suggested role of waning immunity in the selection of pediatric serotypes. However, antibiotic selection pressure is also likely to be an important factor. In Switzerland, the rate of antibiotic consumption in outpatients is among the lowest observed in Europe, with an average of 8.97 DDD per 1,000 inhabitants per day (5, 11, 12). Only in The Netherlands has antibiotic consumption been equally low. Low antibiotic selection pressure may explain the relatively low proportion of pediatric serotypes among the elderly population observed in this study. These findings are relevant for the expected indirect effect (herd immunity) of PCV-7 on older age groups and for the potential use of this vaccine in the elderly (10, 32). The proportion of serotypes covered by PCV-7 among infants was lower in Switzerland than in other European countries (16, 17). Again, low antibiotic selection pressure seems to be an important reason for this observation. In contrast with previous studies from the United States and South Africa, no association was found between pediatric serotypes and women of childbearing age (3, 10). This suggests that sociodemographic factors associated with low crowding may have also influenced the study results.
A higher proportion of pediatric serotypes and significantly higher serotype-specific proportions of penicillin resistance for the pediatric serotypes 6B, 9V, 14, and 19F were observed in West Switzerland. Antibiotic consumption among outpatients in this region is significantly higher than in other regions of Switzerland (Fig. 3) (11, 25). In addition, cephalosporins, which exert a higher selection pressure for penicillin-resistant S. pneumoniae isolates than amoxicillin (4), are used more frequently in West Switzerland (Fig. 3). Also, day care attendance has been shown to be significantly higher in West Switzerland (20.7 versus 11.9%), although it was not an independent risk factor for the carriage of PNSP (25). The spread of penicillin resistance in S. pneumoniae isolates is probably due to the geographical spread of a small number of resistant clones rather than a frequent de novo development of resistance in individual isolates (22). Therefore, antibiotic selection pressure as well as easier dissemination in day care centers were probably responsible for the selection of resistant clones in West Switzerland, leading to higher proportions of SSR and resistant serotypes in this geographic region. However, there is some evidence that pneumococcal strains with recently acquired penicillin resistance may have also been selected (18).
In conclusion, the epidemiology of invasive and colonizing S. pneumoniae isolates is influenced by the serotype-specific potential for invasiveness and colonization. Surveillance programs should therefore include both colonizing and invasive S. pneumoniae isolates. In addition, antibiotic selection pressure determines the serotype distribution in different age groups and in different geographic regions. Therefore, it has a significant influence on the expected direct and indirect effects of PCV-7.
No author has a commercial or other association that might pose a conflict of interest.
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