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Journal of Clinical Microbiology, January 2007, p. 199-205, Vol. 45, No. 1
0095-1137/07/$08.00+0 doi:10.1128/JCM.01319-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Reference Centre for Detection of Antimicrobial Resistance (K-res), Department of Microbiology and Infection Control, University Hospital of North Norway, and Department of Microbiology and Virology, Institute of Medical Biology, Faculty of Medicine, University of Tromsø, Tromsø, Norway,1 Department of Microbiology, Sørlandet Hospital, Kristiansand, Norway,2 Department of Microbiology, Akershus University Hospital, Lørenskog, Norway,3 Department of Medical Microbiology, Cardiff University, Cardiff, United Kingdom,4 Norwegian Institute of Public Health, Oslo, Norway5
Received 27 June 2006/ Returned for modification 11 August 2006/ Accepted 14 October 2006
| ABSTRACT |
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| INTRODUCTION |
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(The results of this study were presented in part at the European Congress of Clinical Microbiology and Infectious Diseases, Prague, Czech Republic, 2004.)
| MATERIALS AND METHODS |
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Antimicrobial susceptibility testing. E. coli (n = 89) and Klebsiella pneumoniae (n = 27) isolates with reduced susceptibilities to oxyimino-cephalosporins in the initial testing were examined at the Reference Centre using the following panel of Etest ß-lactams (AB Biodisk) according to the manufacturer's instructions: ampicillin, amoxicillin-clavulanic acid (CLA), piperacillin, piperacillin-tazobactam, cefoxitin, CPD, CTX, CAZ, cefepime (FEP), aztreonam, imipenem, and meropenem. Vitek2 ASTN023 was used to determine susceptibility to non-ß-lactam antibiotics. Interpretations were in accordance with NWGA guidelines. Breakpoints for cefpodoxime have not been established by the NWGA, and a MIC of >1 mg/liter was thus defined as indicative of reduced susceptibility.
Phenotypic detection of ESBL production.
Phenotypic tests were performed on the same day from the same subculture with ampicillin selection (100 mg/liter). ESBL production on isolates expressing a reduced susceptibility (MIC > 1 mg/liter) to an oxyimino-cephalosporin (cefpodoxime and/or cefotaxime and/or ceftazidime) was examined using (i) CTX-CLA, CAZ-CLA, and FEP-CLA ESBL Etests and (ii) disks containing cefpodoxime, ceftazidime, or cefotaxime with and without CLA (called the combined disk method) (Oxoid, Basingstoke, United Kingdom). An ESBL phenotype was defined by reduced susceptibility (MIC > 1 mg/liter) to an oxyimino-cephalosporin (cefpodoxime and/or cefotaxime and/or ceftazidime) and a significant increase in susceptibility to oxyimino-cephalosporins tested in combination with CLA by the Etest and/or the combined disk method. For Etest analyses, ESBL production was defined as a
8-fold decrease in the MIC of cefotaxime, ceftazidime, or cefepime in the presence of CLA or the presence of so-called phantom or deformity zones. In the combined disk method, ESBL production was defined as an increase of
5 mm in the zone around CLA disks compared to the zones of corresponding disks without CLA. In comparison, a modified version of the Jarlier double-disk synergy (DDS) method (10) for detecting CLA synergy was used. Aztreonam (30 µg), cefpodoxime (10 µg), ceftazidime (30 µg), cefotaxime (5 µg), and cefpirome (30 µg) disks (Oxoid) were placed around an amoxicillin (20 µg)-clavulanic acid (10 µg) disk at a distance of 25 to 30 mm center to center. A clearly visible extension of the edge of the inhibition zone of any disk towards the amoxicillin-clavulanic acid disk was interpreted as positive for CLA synergy.
DNA analyses. Bacterial DNA extraction was performed in a QIAGEN model M48 BioRobot (QIAGEN, Hilden, Germany) using a MagAttract DNA mini M48 kit (QIAGEN). 16S rRNA gene PCR-positive DNA extracts were screened for the presence of blaTEM, blaSHV, and blaCTX-M by consensus PCRs in a GeneAmp PCR system 9700 (Applied Biosystems, Foster City, CA) using Applied Biosystems standard PCR mixtures with GeneAmp PCR buffer and Taq DNA polymerase. PCR information is given in Table 1. Bidirectional sequencing was performed using a BigDye v. 3.1 cycle sequencing kit and a model 3100 genetic analyzer (Applied Biosystems). Editing and alignment of DNA sequences were performed using the SeqMan II software package (DNAStar, Inc., Madison, WI).
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Quality control strains. E. coli J62 (blaTEM-3), E. coli (blaCTX-M-3), Kluyvera georgiana (blaKLUG-1), K. pneumoniae ILT-2 (blaCTX-M-14), and K. pneumoniae ILT-3 (blaCTX-M-19), kindly provided by David Livermore and Laurent Poirel, as well as K. pneumoniae ATCC 700603 (blaSHV-18) and E. coli ATCC 25922, were used.
| RESULTS |
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Fifty of the 52 (96%) ESBL phenotype-positive E. coli isolates carried the blaCTX-M, blaSHV, or blaTEM ESBL gene. The PCR results are summarized in Table 2. blaCTX-M was detected in 45 isolates (90%). CTX-M sequence grouping and typing performed according to the method of Bonnet (3) revealed the CTX-M-1 group (n = 29), the CTX-M-9 group (n = 15), and the CTX-M-2 group (n = 1). Within the CTX-M-1 group, blaCTX-M-15/28 (n = 23) was the most prevalent genotype. Sequence typing within the CTX-M-9 group (n = 15) revealed blaCTX-M-9/9a (n = 4), blaCTX-M-16 (n = 1), and various indistinguishable blaCTX-M-9 genogroup (blaTOHO2/3/CTX-M-14/17/18/21/24) types (n = 10). blaSHV and blaTEM were detected in 4 and 34 isolates, respectively. blaSHV typing revealed blaSHV-1 (n = 2) and blaSHV-ESBL (n = 2). The 34 blaTEM genes were detected in 31 blaCTX-M-positive and three blaSHV- and blaCTX-M-negative strains. Sequence typing of the latter showed blaTEM-52 (n = 1) and blaTEM-128 (n = 2). blaTEM-1 was detected in six randomly selected blaCTX-M-positive isolates. Two E. coli isolates were negative for CLA synergy in the combined disk method but positive by CAZ-CLA and FEP-CLA but not CTX-CLA ESBL Etests. Both isolates contained blaSHV-1 and had phenotypic profiles consistent with hyperproduction of SHV-1: moderate increases in ceftazidime MICs (2 to 4 mg/liter), wild-type cefotaxime MICs (0.125 to 0.25 mg/liter), and piperacillin-tazobactam MICs of >256 mg/liter. IEF analysis revealed single ß-lactamase pI bands of approximately 7.5, consistent with an SHV-like enzyme in both strains (data not shown). In summary, the overall prevalence of ESBLs in E. coli isolates was 50 of 87 isolates (58%).
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ESBL detection and bla genotyping in K. pneumoniae. An ESBL phenotype was recognized in 21/25 (84%) K. pneumoniae isolates expressing reduced susceptibility to an expanded-spectrum cephalosporin by the Etest. Eighteen isolates were ESBL positive by the combined disk method. Twenty-one isolates were positive by the ESBL Etests and included those positive by the combined disk method.
A total of 19 ESBL genes, namely, blaCTX-M (n = 3), blaSHV (n = 15), and blaTEM (n = 1), were detected in 19 isolates (Table 2). blaSHV-5, blaSHV-5a, and blaSHV-12 were the most prevalent ESBL genotypes. blaCTX-M amplicons were typed as being in the blaCTX-M-15/28 (n = 2) and blaCTX-M-9 (n = 1) genogroups. The three blaCTX-M strains were also shown to contain blaSHV-11 or blaSHV-14. Both blaSHV-11 and blaSHV-14 have previously been reported to express a non-ESBL phenotype in K. pneumoniae (15, 30). The blaTEM-52 (n = 1) and blaTEM-1 (n = 8) genes were detected in nine strains. Discordant ESBL phenotype results were observed with three K. pneumoniae strains. Interestingly, one blaSHV-28 isolate expressed significant CLA synergy in FEP-CLA and CAZ-CLA ESBL Etests but was negative in the combined disk method. The difference in inhibition zones of ceftazidime disks with and without CLA was 3 mm (24 versus 21 mm).
A similar phenotypic profile was observed for one blaSHV-1 isolate and one blaSHV-11 isolate expressing phenotypes analogous to those of the two SHV-1-hyperproducing E. coli strains described above. They were consequently regarded as SHV-1 and SHV-11 hyperproducers. In summary, the overall prevalence of ESBL-positive strains in the K. pneumoniae collection was 19/25 (76%). The lack of chromosomally encoded AmpC ß-lactamases in the genus Klebsiella may explain the relatively higher occurrence of ESBL production in K. pneumoniae than in E. coli isolates (50/87; 58%) with reduced susceptibilities to oxyimino-cephalosporins (18, 26).
All 25 K. pneumoniae isolates with reduced susceptibilities to oxyimino-cephalosporins were examined by the DDS test. CLA synergy was observed in 21 strains that were identical to the ESBL Etest-positive strains. The putative SHV-1- and SHV-11-hyperproducing strains also expressed CLA synergy in the DDS test.
Performance of ESBL tests. The performance of ESBL Etests and the combined disk method in the detection of ESBL production in E. coli and K. pneumoniae is summarized in Tables 3 and 4. Significant CLA synergy was easily detected by all substrates in both methods for the most prevalent ESBL genogroups: the blaCTX-M-15/28 genotypes and blaSHV-5/12 genotypes in E. coli and K. pneumoniae, respectively. However, discordant ESBL test results were observed in one major and several minor ESBL genotypes.
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8 was observed only for the CTX-M-16 strain, whereas the other 13 CTX-M-9-positive strains scored positive by the CAZ-CLA ESBL Etest by the appearance of deformity in the ellipse only (the "eagle effect"). The single blaCTX-M-9 genogroup K. pneumoniae strain scored positive for ESBL production by both methods using all three oxyimino-cephalosporin substrates. The minor ESBL types with aberrant ESBL test results included six E. coli strains within the blaCTX-M-1 (n = 4; blaCTX-M-1 and blaCTX-M-3/22) and blaTEM-128 (n = 2) genogroups that were negative by the ceftazidime combined disk test (Table 4). In contrast, all these strains were positive by the CAZ-CLA ESBL Etest (Table 4). The blaCTX-M-1 and blaTEM-128 strains were positive by deformity in the ellipse only, whereas the two blaCTX-M-3/22 strains had the marginally positive CAZ/CAZ-CLA MIC ratios 12 (K5-58) and 11 (K8-8), respectively. Moreover, one blaSHV-2 strain and two blaSHV-28 K. pneumoniae strains scored negative in one or two of the ESBL Etests (Table 3). Corresponding results were obtained by the combined disk method, except with one ESBL blaSHV-28 K. pneumoniae strain (K2-79) that scored negative for all substrates (Table 4).
MIC profiles for ESBL-producing strains. The MIC means and ranges for oxyimino-cephalosporins and aztreonam within the different ESBL genogroups are presented in Table 5. CTX-M and SHV ESBL-producing strains generally expressed cefotaximase and ceftazidimase profiles, respectively. The MICs of all substrates for the strains with the most-prevalent ESBL genotypes, blaCTX-M-15/28 in E. coli and blaSHV-5/12 in K. pneumoniae, were high to moderate.
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Coresistance. The majority of ESBL-positive E. coli strains (36/50; 70%) expressed resistance to two or more non-ß-lactam antibiotics (aminoglycosides [AG], fluoroquinolones [FQ], nitrofurantoin [NIT], and/or trimethoprim-sulfamethoxazole [SXT]) and were defined as multidrug resistant (MDR). Sixteen out of 23 (70%) blaCTX-M-15/28 E. coli strains were resistant to three or more non-ß-lactam antibiotics, in contrast to 3/15 (20%) of the blaCTX-M-9 strains. Twenty-eight (62%), 30 (67%), 18 (40%), and 33 (73%) out of 45 CTX-M-positive strains were resistant to AG, FQ, NIT, and SXT, respectively. Only one of the blaTEM and blaSHV ESBL-positive E. coli strains (n = 5) was resistant to more than two non-ß-lactam antibiotics, and those strains were all susceptible to FQ. Twelve (63%) of the ESBL-producing K. pneumoniae strains expressed MDR. Nine (45%), 3 (15%), 18 (90%), and 4 (20%) K. pneumoniae strains were resistant to AG, FQ, NIT, and SXT, respectively.
Epidemiological data. ESBL-producing strains were detected in 16 laboratories. There were no indications of nosocomial outbreaks during the study period. Urinary tract isolates (n = 42), specifically, 34 (68%) E. coli isolates and 8 (42%) K. pneumoniae isolates, were dominant. ESBL-positive blood culture isolates were not detected. Twenty-two (44%) of the E. coli isolates were from outpatients; however, hospital contact cannot be ruled out as the means of ESBL-positive strain acquisition. We did not detect any specific blaCTX-M genogroups in hospitalized or nonhospitalized patients, and MDR phenotypes were detected in both groups. Only two (10%) K. pneumoniae isolates were from outpatients.
| DISCUSSION |
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The various genotypes and phenotypic expression patterns detected in this study challenge the sensitivities of ESBL detection methods. The predominant CTX-M-15-like enzymes were easily detected by all methods due to their broad oxyimino-cephalosporin substrate profile (11, 20). However, the ceftazidime combined disk method failed to detect 14 out of 15 CTX-M-9-like enzymes in E. coli isolates, in contrast to the CAZ-CLA ESBL Etest results showing the presence of deformed inhibition ellipses. Interestingly, all CTX-M-9-producing E. coli strains showed reduced susceptibility to cefpodoxime (mean, 55 mg/liter) and expressed significant CLA synergy in the combined disk test using cefpodoxime as the substrate.
Discrepancies between different detection methods were also observed for some of the minor E. coli ESBL genotypes. The two TEM-128 strains had a CTX-M-9-like phenotype and scored negative in the ceftazidime combined disk method. blaTEM-128 has a T-to-G mutation, causing an Asp157
Glu substitution (Ambler numbering). ESBL activity was not observed in a TEM-128 E. coli strain recently isolated from food animals in Denmark (17), in contrast to the TEM-128-positive strains in this study expressing cefotaximase activity.
SHV-5-like enzymes expressing a ceftazidimase profile predominated among Norwegian clinical K. pneumoniae strains (79%). Six isolates containing SHV-28-like (n = 2) and SHV-2-like (n = 4) enzymes expressed low MICs of cefotaxime and ceftazidime. Accordingly, these strains scored negative in the ESBL confirmation tests when low-MIC substrates were used to detect CLA synergy (27).
SHV-1 hyperproduction in E. coli and K. pneumoniae has previously been reported to mediate an increased MIC of ceftazidime (MIC > 1 mg/liter) and CLA synergy, suggesting ESBL production (13, 21, 29). The three putative SHV-1-hyperproducing E. coli and K. pneumoniae strains, as well as the SHV-11-hyperproducing K. pneumoniae strain, showed inconsistent results by the ESBL detection methods. They scored positive for ESBL production in FEP-CLA and CAZ-CLA ESBL Etests, in contrast to results by the combined disk method, which were negative for CLA synergy using all three substrates. The basis for this discrepancy is not known, but it could be due to differences in CLA content. The concordance between the ESBL Etest and combined disk method results was otherwise excellent.
The overall high sensitivities of the ESBL Etests, as well as the sensitivity of the combined disk method, for this collection of clinical E. coli and K. pneumoniae strains were based on the combined use of cefotaxime and ceftazidime or cefpodoxime alone as screening substrates for CLA synergy. All ESBL strains were detected by using both cefotaxime and ceftazidime in combination with CLA. The single SHV-28 K. pneumoniae strain that failed in the detection of CLA synergy with cefpodoxime was associated with a low cefpodoxime MIC (0.75 mg/liter).
The detected ESBL genotypes seem to be representative of those circulating in Norway. The dominance of CTX-M ESBLs in E. coli and SHV ESBLs in K. pneumoniae has been verified in the 2 years following this study. CTX-M-15- and CTX-M-9-like phenotypic patterns confirmed by positive consensus CTX-M PCRs were observed in 232/282 (82%) clinical ESBL-positive E. coli strains submitted to the Reference Centre during 2004 to 2005 (unpublished results). Thus, cefpodoxime alone or the combined use of cefotaxime and ceftazidime could be recommended as screening substrates for ESBL-mediated reduced susceptibility to oxyimino-cephalosporins.
The DDS test is an inexpensive and easy-to-use method for the detection of CLA synergy with various substrates and demonstrated excellent sensitivity when the disks were placed 25 to 30 mm (center to center) apart. However, we detected unexplained CLA synergy with aztreonam and cefpirome in three E. coli strains. The clinical significance of these findings is not obvious, and the findings illustrate the problems associated with methods based purely on visual inspection of CLA synergy, without more-objective criteria for interpretation. Moreover, it is well known that disk spacing affects the detection of inhibition. On the other hand, the DDS method represents the maximum flexibility that may enable the detection of ß-lactamases with alternative substrate profiles.
Our observations of MDR among Norwegian ESBL-producing E. coli strains both in hospitals and in community settings are in accordance with recent studies (6, 22, 23, 28) and indicate the presence of biologically fit, easily transmitted genetic lineages of MDR E. coli strains. We did not detect strains with reduced susceptibilities to carbapenems, which consequently seem to be the only reliable therapeutics for systemic infections with these strains.
Interestingly, a substantial proportion of the CTX-M-positive urinary tract E. coli isolates were recovered from outpatients representing 15 different laboratories. The widespread appearance of CTX-M-producing clinical isolates of E. coli outside hospitals in Norway as well as other countries (6, 14, 19, 22, 28) strongly suggests common reservoirs. The high prevalence of MDR in CTX-M-positive E. coli contrasts with the low prevalence of reduced susceptibilities to ciprofloxacin (2.3%), gentamicin (1.3%), and nitrofurantoin (1.6%) in E. coli isolates recovered from urinary and blood culture samples in the Norwegian surveillance system in 2003 (1). These observations, combined with the overall low usage of antibiotics in Norway, may suggest that the emergence of MDR CTX-M-positive E. coli strains in our country is due to the import of resistant strains rather than local selection (1). It would therefore be of interest to compare the Norwegian strains to international clones in order to elucidate common reservoirs and lines of transmission. The molecular epidemiology of CTX-M-producing Norwegian E. coli strains is under investigation.
| ACKNOWLEDGMENTS |
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This study has been a collaborative study led by the Reference Centre for Detection of Antimicrobial Resistance, University Hospital (UH) of North Norway, with extensive efforts from most diagnostic laboratories in Norway forming the NESBL (Norwegian ESBL) Study Group. Members of the study group included the authors and Signe H. Ringertz (Aker UH), Asbjørn Digranes and Kirsten Bottolfsen (Haukeland UH), Einar Vik (Molde Hospital), Henriette Marstein (Capio, Laboratory of Clinical Microbiology), Truls Leegaard (Institute of Microbiology, National Hospital), Liisa Mortensen and Ruth Stavdal (Nordland Hospital), Elisebet Haarr (Stavanger UH), Hjørdis Iveland and Anne-Elise Johansen (Buskerud Hospital), Trond Jacobsen (St. Olavs UH), Pål Jenum (Asker and Bærum Hospital), Anne Lise Bru and Astrid Lia (Vestfold Hospital), Einar H. Aandahl and Ingunn Haavemoen (Innlandet Hospital), Eivind Ragnhildstveit and Anne Cath Hollekim (Østfold Hospital), Yngvar Tveten (AS Telelab), Ove Pedersen (Innhered Sykehus), Dag Hvidsten (UH of North Norway), and Sølvi Noraas and Torill S. Larsen (Sørlandet Hospital).
We thank Merete Birkely, Aase-Mari Kaspersen, Manuela Kramer, and the medium production unit for excellent technical assistance. Also, thanks go to Inger Sperstad for creating the Access database.
| FOOTNOTES |
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Published ahead of print on 1 November 2006. ![]()
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