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Journal of Clinical Microbiology, December 2007, p. 3915-3920, Vol. 45, No. 12
0095-1137/07/$08.00+0 doi:10.1128/JCM.02528-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Pathology, Division of Medical Microbiology, Johns Hopkins University, Baltimore, Maryland,1 Texas Department of State Health Services, Austin, Texas2
Received 18 December 2006/ Returned for modification 28 March 2007/ Accepted 21 September 2007
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Current susceptibility testing methods can require several weeks to complete, which results in the empirical treatment of patients with standard first-line drug regimens until the need for the use of alternative second-line drugs is indicated. This delay can result in the dissemination of drug-resistant M. tuberculosis to others in the population. More rapid and reliable susceptibility testing would enable health care workers to identify those with MDR and XDR TB earlier and provide for the more timely initiation of appropriate drug regimens. Such technology is essential for the future of TB control.
Previous investigators have demonstrated the feasibility of performing M. tuberculosis susceptibility testing by measuring mycolic acid levels by high-performance liquid chromatography (HPLC) (10, 21). Mycolic acids are high-molecular-weight
-alkyl, β-hydroxy fatty acids containing an
branch of 20 to 25 carbons and a primary or meromycolate chain of 50 to 60 carbons. These large fatty acids comprise up to 30% of the mycobacterial cellular dry weight and are actively synthesized during vegetative growth. HPLC has been used extensively for the qualitative analysis of mycolic acids, providing a valuable method for the identification of mycobacteria isolated from clinical specimens (3, 4). In addition to the qualitative data obtained with each analysis, the chromatogram provides a quantitative measure of the total mycolic acids derived from the total peak height/area response of the total mycolic acid peaks (TMAPs). A linear relationship exists between this total response and the numbers of CFU/ml, and this relationship has enabled previous investigators to demonstrate the feasibility of performing M. tuberculosis susceptibility testing by measuring the total mycolic acid concentration (10).
In the current work, we describe an improved, standardized, and validated mycolic acid-based susceptibility testing method.
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Standard susceptibility testing. Susceptibility testing and determination of MICs were done by using the Bactec 460 radiometric growth system (Becton Dickinson) and/or the agar proportion method by the use of standard protocols (15, 19). Table 1 shows the profiles of susceptibility to INH, RIF, EMB, PZA, and STR of each of the strains used in this study. Briefly, for the Bactec 460 system, a standardized inoculum (a 1.0 McFarland standard) was prepared for each isolate and 0.1 ml was injected into each of the following vials: a control vial with no antibiotic representing a 1:100 dilution of the inoculum; a control vial with no antibiotic representing the inoculum used in the drug-containing vials; and vials each containing INH (0.1 µg/ml and 0.4 µg/ml), RIF (2.0 µg/ml), EMB (2.5 µg/ml), and STR (2.0 µg/ml). The growth index (GI) was monitored at 24-h intervals until the reading in the control diluted 1:100 reached a value of 30. The GI change was then calculated for a 1-day period for each drug tested. A GI change of <30 indicated susceptibility to a given agent. Resistance (GI > 30) to any of the anti-M. tuberculosis drugs (INH, RIF, EMB, or STR) was confirmed by repeat testing with the Bactec radiometric system and/or by the Middlebrook agar proportion method (15). The anti-M. tuberculosis drugs and concentrations tested by the agar proportion method were as follows: INH, 1.0 µg/ml; RIF, 1.0 µg/ml; EMB, 5.0 µg/ml; and STR, 2.0 µg/ml.
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TABLE 1. M. tuberculosis strains used in this study and their susceptibility profiles
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HPLC susceptibility testing. (i) Time course determination and sample processing.
The same standardized inoculum and procedure outlined above for the Bactec 460 system were used. An undiluted control vial was included for each strain tested and was used for comparison of the TMAPs with those of the antibiotic-containing vials. The vials were monitored at 24-h intervals for up to 72 h, and the GI obtained with the Bactec system was recorded. Aliquots (2 ml) were removed from the individual vials at 20 min and 24, 48, and 72 h following the introduction of each antibiotic and were mixed 1:1 with 50% potassium hydroxide, followed by autoclaving for 30 min. Once the mixtures were cooled to room temperature, 3.6 ml of 50% HCl was added and the contents of the tubes were mixed by inverting the tubes two to three times. Subsequently, 3 ml of CHCl3 was added to each tube, the tubes were vortexed for 1 min, and the phases were allowed to separate. Equal volumes of each CHCl3 layer from each strain tested were transferred to a clean glass tube and dried under N2. Fluorescent derivatives of the mycolic acids were prepared as described previously (22). Briefly, the samples were dissolved in 200 µl of CHCl3 containing 200 µg of 4-bromomethyl-6,7-dimethoxycoumarin and 200 µg of 18-crown-6 ether (both from Sigma) and transferred to a 2-ml amber vial containing 100 µl of 2% potassium bicarbonate solution which had previously been evaporated. The vials were heated at 60°C for 10 min and allowed to evaporate. Dried extracts were resuspended in 150 µl of HPLC-grade isopropanol (Fisher Scientific) and transferred to a vial containing two fluorescently derivatized mycolic acid reference standards (
40 and
97 carbons) whose retention times do not overlap with those of the mycolic acids present in M. tuberculosis.
(ii) HPLC conditions. HPLC analysis was performed on an Agilent (Wilmington, DE) 1100 HPLC system consisting of an autosampler, quaternary pump, column heater (70°C), and fluorescence detector. The instrument was controlled by the use of Sherlock (MIDI, Inc., Newark, DE) software coupled with Agilent ChemStation software. The sample injection volume was 5 µl. Separation of the mycolic acids was achieved with an Agilent Zorbax SB-C18 column (4.6 mm by 75 mm), a mobile phase of methanol-isopropanol (IPA), and a linear gradient of 23% IPA to 95% IPA over a 10-min period with a flow rate of 1.7 ml/min. Mycolates were detected with a fluorescence detector by using excitation and emission wavelengths of 345 nm and 425 nm, respectively. To maintain maximum sensitivity, the column effluent was cooled to 22°C before it was placed into the detector.
(iii) Chromatographic data analysis. Raw chromatographic data, expressed as the peak height response, were acquired with ChemStation software and processed by using Sherlock software for calculation of the TMAP. The TMAPs were determined for each isolate-drug combination and were compared to that for the corresponding control. The resulting ratio was used for all further data analysis.
Growth rate determination. For growth rate comparisons, a suspension of each strain to be tested was prepared from solid medium by using commercially prepared diluting fluid (Becton Dickinson) and glass beads. The suspensions were vortexed and allowed to settle for a minimum of 30 min, and a 0.1-ml aliquot of the supernatant was removed and used to inoculate a Bactec 12B "seed vial." The seed vials were read at 24-h intervals until a GI of 999 was reached. Subsequently, 0.1 ml was removed from each seed vial and used to inoculate a new Bactec 12B vial. The GI was then recorded at 24-h intervals for up to 9 days, and the average daily change in the GI was calculated for each strain.
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FIG. 1. Characteristic chromatogram and TMAPs of drug-susceptible M. tuberculosis strain H37Rv following 72 h of incubation with and without INH. (Top panel) Control, no INH; (bottom panel) INH (0.1 µg/ml). FU, fluorescence units.
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FIG. 2. Percent change in TMAP following exposure to INH (0.1 µg/ml) versus RIF (2.0 µg/ml) over time in drug-susceptible M. tuberculosis strain H37Rv.
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Several breakpoints ranging from 20% to 30% were examined to determine which one provided the best agreement between the standard Bactec 460 susceptibility test method and HPLC. For each strain-antibiotic combination, the percent change in TMAP for each treated culture compared with that for the control culture was determined at 72 h and compared with the known susceptibility of that particular strain. Susceptibility was defined as a reduction in TMAP relative to that for the corresponding control of greater than or equal to breakpoints set at 20% or 30%. Strains exhibiting TMAP changes of less than or equal to the breakpoint (20% or 30) were defined as resistant. By using a 20% breakpoint, the concordances were 71%, 88%, 94%, and 82% for INH, RIF, EMB, and PZA, respectively. In contrast, the highest percent agreement for all drugs was obtained by using the 30% breakpoint, which resulted in 99.5% agreement for INH, EMB, and PZA and 98.7% agreement for RIF compared to the values obtained by the Bactec 460 susceptibility testing method. Figure 3 illustrates the mean percent change in TMAP for all drug-susceptible and -resistant strains to each of the first-line agents obtained by use of the 30% breakpoint. With a total of 240 susceptibility tests, the overall concordance was 97.5%. Discordant results indicating false susceptibility were observed for the following antibiotics: INH and EMB (one result each) and RIF (two results). False resistance was demonstrated for RIF and PZA (one result each). Intra- and interassay variabilities were assessed by testing the same strain (strain H37Rv) six times within the same day or individual replicates over 6 consecutive days. For each culture the coefficient of variation was calculated on the basis of the ratio of the TMAP for the control cultures to the TMAP for the treated cultures. The overall precision was 13.4%. However, the precision did vary by drug (INH, 9.17%; RIF, 11.2%; EMB, 11.4%; PZA, 21.9%).
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FIG. 3. Mean percent change in TMAPs for all susceptible and resistant M. tuberculosis strains to each first-line antibiotic by using a breakpoint of 30%. TMAP was determined for the treated versus the control cultures, and the percent change was calculated. INH, 0.1 µg/ml; RIF, 2.0 µg/ml; EMB, 2.5 µg/ml; PZA, 100 µg/ml.
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62.4%; range, –42% to –83%) was observed in each of two separate experiments. The reduction in the TMAP was similar in STR-susceptible strain H37Rv (average,
88%). Resistance to STR (2.0 µg/ml) was confirmed by both the Bactec 460 radiometric method and the agar proportion method. However, differences in growth rates were observed between STR-susceptible strain H37Rv and the resistant strains producing discrepant results. Overall, these strains exhibited slower growth than drug-susceptible strain H37Rv, slowing an average of 54 GI units over 9 days (range, –38 to –386 GI units). |
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A variety of susceptibility testing methods have been developed for M. tuberculosis. The oldest and current standard is the proportion method. In this method, drug-free and drug-containing media are inoculated with known dilutions of the test organism and the subsequent ratio of the number of colonies on the drug-free medium/number of colonies on the drug-containing medium yields an estimate of the proportion of drug-resistant organisms present in the sample. This method is not rapid, and its performance may require 3 to 6 weeks after recovery of the isolate in culture. Other broth-based susceptibility testing platforms, such as the semiautomated, radiometric Bactec 460 system and the automated, nonradiometric Bactec MGIT (mycobacterial growth indicator tube) 960 system (Becton Dickinson), have mean turnaround times of 4.3 days (range, 3 to 10 days) and 7.3 days (range, 5 to 12 days), respectively (20). Molecular tests have also been used to determine resistance to many of the first-line drugs. These tests sequence the PCR-amplified products of target genes to detect the mutations responsible for resistance. Although they are potentially very effective, molecular tests are hindered by the presence of multiple drug resistance mechanisms for some antibiotics and resistant strains for which no molecular determinant of resistance has been identified. In addition, such tests are expensive, are technically demanding, and are likely beyond the abilities if routine clinical laboratories at this time (1, 12).
In this study and others (10, 21), a clear, nearly linear correlation between TMAPs and the numbers of CFU/ml was demonstrated. As a result, it is possible to use TMAP values as a measure of CFU/ml without having to incubate cultures for up to 3 weeks by standard susceptibility testing methods. Earlier studies focused primarily on INH, RIF, or STR and required 5 days of incubation before susceptibility could be assessed. In the current study, a standardized, time-dependent breakpoint was established for all drugs (INH, RIF, EMB, PZA, and STR) considered together. The extreme sensitivity of the analytical method enabled a definitive correlation to be obtained for all antibiotics at a uniform time point of 72 h and even earlier for isolated antibiotics, such as INH. Since the extraction procedure requires several steps and interpretation of the results relies on quantitative comparisons between control and drug-treated cultures, care must be taken in sample processing. However, the use of the Sherlock software, which automates the operation of the instrument, in conjunction with improvements in the method, including less carryover compared with that described in previous reports (21), and the use of less noxious solvents (isopropanol versus methylene chloride), enabled its routine use by technologists with little or no experience with HPLC.
Discernible differences in TMAP reductions were noted on the basis of the mechanisms of action of the individual drugs. For instance, our results demonstrated that a rapid decrease in TMAP occurred in as little as 20 min for M. tuberculosis strains treated with INH. This is not surprising, since the INH-specific mechanism of action in M. tuberculosis is inhibition of mycolic acid synthesis. Thus, with a mycolic-acid specific inhibitor such as INH, the detection of significant differences in the numbers of CFU/ml is not necessary to detect susceptibility or resistance. However, for other drugs that do not directly target mycolic acid synthesis (RIF, STR, PZA) or that are bacteriostatic (EMB), a significant difference in the numbers of CFU/ml is required to determine drug susceptibility by the TMAP method. This requires longer incubation times to maximize differences in the numbers of CFU/ml. In this study, 72 h of incubation and a 30% breakpoint were the optimal TMAP testing parameters for all four first-line drugs (INH, RIF, EMB, and PZA) considered together. However, further improvements in the method could target optimization of drug-specific incubation times and breakpoints. For instance, on the basis of the data generated in this study, the detection of INH susceptibility or resistance could be optimized at a 30-min incubation time, and that for RIF could be optimized at a 50-h incubation time. This would provide for the even more rapid detection of MDR M. tuberculosis by the TMAP method. MDR M. tuberculosis strains are defined as those strains resistant to both INH and RIF. The ability to detect MDR M. tuberculosis in <3 days would be a significant improvement over currently available conventional methods, which require days to weeks to complete. During the delays inherent in conventional methods, inappropriate therapy is often administered, with no clinical improvement in the patient and with the possible dissemination of M. tuberculosis to others in the population.
The intra- and interassay precisions also varied by drug and ranged from 9.17% for INH to 21.9% for PZA. These drug-specific differences in precision may be related to the specific mechanism of action of each drug and the rapidity with which a given agent kills M. tuberculosis in vitro. INH, which specifically targets mycolic acid synthesis and which is rapidly bactericidal, yielded reproducible differences in TMAP values, with a much narrower range in variation compared with those obtained with RIF, EMB, and PZA. PZA, for which the most variation in precision was observed, is a prodrug which requires conversion to pyrazinoic acid (POA) via the mycobacterial nicotinamidase/pyrazinamidase (24). This conversion is necessary for PZA-mediated bactericidal activity against M. tuberculosis. Once it is converted to POA, it is excreted by the bacilli via a weak efflux pump. Due to the inefficiency of this efflux pump, the POA accumulates within the bacilli, resulting in cellular damage and death. The time required for the conversion of PZA to POA may vary between M. tuberculosis strains. This variation may also be related to the inherently different growth rates observed between M. tuberculosis strains in slightly acidic media (pH 6.0) (24). In this study, strain-to-strain variation in growth was not assessed. However, it is possible that such differences played a role in the increased amount of variation in the intra- and interday precision studies with PZA.
STR, once considered a first-line drug for the treatment of TB, has been transitioned to second-line status (15). We examined the utility of the TMAP susceptibility testing method in correctly identifying STR susceptibility and resistance in multiple strains of M. tuberculosis. Previous investigators have demonstrated that it was possible to detect differences in growth after 3 to 4 days of incubation in STR-exposed cultures of M. tuberculosis using mycolic acid analysis (14). It is important to note that the majority of the strains used in that study were susceptible to STR. In the present study, STR susceptibility was correctly identified in 42 of 42 (100%) susceptible strains. However, the TMAP method failed to detect STR resistance in 15 of 22 resistant strains. The molecular mechanism of STR resistance correlates closely with the in vitro activity of the drug (14). STR resistance is mediated by a number of factors, including mutations in rpsL, which encodes a ribosomal 30S gene (S12), and rrs, a 16S rRNA gene. Mutations in rpsL are associated with high-level resistance, whereas mutations in rrs are associated with intermediate resistance. Some STR-resistant strains have no mutations in either of these two genes and exhibit low-level resistance. These strains are thought to have altered membrane permeability to the drug, which contributes to resistance, since the use of membrane-active agents in combination with STR significantly increases susceptibility. Altered membrane permeability could also have a negative impact on the growth rate. In this study, all the STR-resistant strains producing discrepant results between the two methods exhibited slower growth relative to that of their STR-susceptible counterparts. The number of CFU/ml at a given time point would necessarily be lower for the more slowly growing strains, resulting in inaccurate TMAP results. Since the molecular mechanism(s) of STR resistance was not determined in this study, it is not possible to confirm whether these strains had a genotype consistent with that found in STR-resistant isolates for which altered membrane permeability is suspected.
Our data suggest that determination of the mycolic acid concentration by the TMAP method is a rapid and sensitive indicator of cell growth inhibition and death in M. tuberculosis compared to the speeds and sensitivities of standardized susceptibility protocols. Further studies are planned, including optimization of the testing parameters with first-line drugs, with extension to second-line agents, and feasibility studies with other testing platforms, such as the Bactec 960 MGIT system.
In summary, the TMAP method is a rapid, sensitive, and accurate method for testing the susceptibility of M. tuberculosis strains to all currently used first-line drugs. The results are obtained in 72 h, as opposed to the lengthy period required for conventional methods, leading to the more rapid identification of MDR and, possibly, XDR M. tuberculosis.
Published ahead of print on 3 October 2007. ![]()
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