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Journal of Clinical Microbiology, April 2007, p. 1087-1092, Vol. 45, No. 4
0095-1137/07/$08.00+0 doi:10.1128/JCM.01754-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Leslie Hall,1
Annette W. Fothergill,2
Davise H. Larone,3 and
Nancy L. Wengenack1*
Division of Clinical Microbiology, Mayo Clinic College of Medicine, Rochester, Minnesota 55905,1 Department of Clinical Pathology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229,2 Department of Clinical Pathology and Laboratory Medicine, Weill Cornell Medical Center, New York-Presbyterian Hospital, New York, New York 100213
Received 24 August 2006/ Returned for modification 23 October 2006/ Accepted 18 January 2007
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95% of the time. The YST card correctly identified 100% of the challenge strains, which covered the species range of the manufacturer's performance claims. Using clinical isolates, the YST card correctly identified 98.5%, with 1.0% of isolates incorrectly identified and 0.5% unidentified. Among clinical isolates, the YST card generated fewer low-discrimination results (18.9%) than did API (30.0%). The time to identification with YST was 18 h, compared to 48 to 72 h with API. The colorimetric YST card used with the VITEK 2 provides a highly automated, objective yeast identification method with excellent performance and reproducibility. We found this system useful for timely and accurate identification of significant yeast species in the clinical microbiology laboratory. |
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VITEK 2 (bioMérieux, Inc. Hazelwood, MO) is a fully automated microbiology identification system that evaluates an optical signal generated by individual biochemical reactions contained within a variety of microbe identification cards. After inoculation with a standardized suspension of the unknown organism, each self-contained card is incubated and read by the instrument's internal optics. Comparison of results to known species-specific reactions in the VITEK 2 database yields organism identification.
This study utilized a new colorimetric yeast identification (YST) card designed to replace the fluorimetric yeast identification (ID-YST) card. The colorimetric card has been developed for use with the VITEK 2 system in conjunction with updated instrument optics and identification software. Results from the 46 tests contained in the card were compared to an identification database which included 52 taxa belonging to the following genera: Candida, Cryptococcus, Geotrichum, Kloeckera, Kodamaea, Malassezia, Pichia, Rhodotorula, Saccharomyces, Sporobolomyces, Stephanoascus, Trichosporon, and Zygosaccharomyces. Prototheca, an alga occasionally causing infection and encountered in clinical specimens, was also included in the database. Identification to species level for clinical specimens was generated after 18 h of incubation.
The purpose of this multicenter study was to evaluate the reliability and reproducibility of the YST card compared to the API 20C AUX (API) for the routine identification of yeasts and other yeast-like organisms in the setting of the clinical microbiology laboratory. The study consisted of three components which were examined using the YST card in parallel with API: (i) quality control (QC) testing evaluated system and substrate reproducibility, (ii) challenge testing covered the species range of YST performance claims, and (iii) the use of clinical isolates and stock cultures obtained from each of the three participating centers tested the utility in the clinical laboratory.
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TABLE 1. Challenge organisms tested with the YST card at three trial sites
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TABLE 2. Results of testing clinical isolates with YST card compared to APIa
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API. The API is composed of a 20-cupule plastic strip containing dehydrated carbohydrate substrates. Strips were inoculated with a 1:70 dilution of an organism suspension corresponding to a McFarland 2.0 standard and were incubated according to manufacturer's recommendations at 30°C for 48 to 72 h. After the recommended incubation, individual cupules in each strip were visually examined by the investigators for the presence of turbidity, which is indicative of carbohydrate assimilation. An additional 100 µl of the organism suspension was plated on cornmeal agar with Tween 80 (Remel, Lenexa, KS) and incubated at 30°C. Cornmeal plates were examined microscopically for the presence of hyphae or pseudohyphae. Profile numbers were generated based upon strip reactions and hyphal characteristics observed after 48 to 72 h of incubation at 30°C. Identification was made by profile number comparison to the APILAB plus V. 3.3.2 program. Final results were listed as "excellent," "very good," "good," "acceptable," "genus level," "low-discrimination," "presumptive," "doubtful," or "unacceptable" identifications. No distinction was made between excellent, very good, good, and acceptable matches. Additional supplemental tests were performed as directed by the manufacturer to confirm genus level, low-discrimination, presumptive, questionable, or doubtful identifications. Supplemental tests included rapid assimilation of trehalose, fermentation (glucose, maltose, sucrose, lactose, galactose, and trehalose), pigment production, phenol oxidase production, assimilation of nitrate and lactate, microscopic morphology, and growth with and without a fatty acid source (olive oil).
QC and challenge testing.
Substrate reproducibility and QC testing were performed with the YST card using a set of 12 QC organisms, which were evaluated for 20 consecutive days. System reproducibility was assessed by testing each QC strain a total of 20 times to determine if the identification of the organism would be as expected
95% of the time, within a
95% confidence level. Challenge testing using the YST card was performed once using the 64 supplied isolates at each of the three sites. Personnel were blinded as to the identity of the challenge organisms. The API system was not tested against the challenge organisms at individual study sites, as all supplied challenge strains were previously characterized by the manufacturer.
Clinical and stock isolate testing. The API was considered the reference standard for this study. Concordant identifications between the YST card and API were considered correct. The API and YST identifications were made independently of each other, and personnel were blinded to the identity of the clinical and stock isolates. The purity of culture isolates was confirmed by streaking a portion of the suspensions used for each YST card and API strip to a Sabouraud dextrose agar plate, followed by 24 hours of incubation at 30°C. Repeat testing of clinical and stock isolates using both YST and API was performed once in instances of card termination, mixed morphology on purity plates, or a result of "no identification." Low-discrimination (slashline) results occur when the generated biopattern is insufficient to discriminate between two or more taxa. Low-discrimination calls on YST and API containing the species in question were considered correct for overall calculations of accuracy. Thirty-four isolates generating discrepant results between YST and API were blind coded and sent to a confirmatory laboratory (bioMérieux, Inc., Hazelwood, MO) for additional evaluation. Discrepancies were resolved based upon Wickerham liquid assimilation and fermentation tests in conjunction with macroscopic and microscopic morphology. Samples with incomplete identifications by multiple methods or species not among those organisms claimed to be identified by the YST database were excluded from the study.
Statistical analysis. Data from each of the three participating centers were combined. Determination of statistical significance was performed using McNemar's test with continuity correction. All tests of statistical significance were two tailed.
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95% correct with
95% confidence intervals) with all QC organisms at each of the three sites. Of the 12 QC isolates tested, 3 (C. guilliermondii, C. lipolytica, and G. capitatum) gave low-discrimination correct results, while the remaining 9 isolates gave one-choice correct results (data not shown). All 64 challenge strains were successfully identified by YST at each testing site (192/192; 100%) (Table 1). Of these, 30/192 (15.6%) returned a low-discrimination result. Low discrimination results were specifically noted with Candida famata, Candida krusei, Candida lambica, C. parapsilosis, C. tropicalis, Cryptococcus albidus, G. capitatum, Saccharomyces cerevisiae, and Trichosporon asahii.
Using clinical samples, the overall agreement between the YST card and API on initial testing was 95.0% (592/623). After confirmatory tests (Wickerham liquid assimilation, fermentation, and morphology), the YST card identified 614/623 (98.5%) clinical isolates correctly and 6/623 (1.0%) incorrectly, and 3/623 (0.5%) were unidentified. Within the 614 YST results considered correct, 118/623 (18.9%) were low-discrimination calls. When results of clinical and challenge testing were combined, YST correctly identified a total of 678/687 isolates (623 clinical and 64 challenge isolates) to the species level (98.7%). There were 30% low-discrimination and 1.0% unidentified results with the API (data not shown).
A detailed analysis of the 31 discrepant isolates indicates misidentification by YST and API to be 19.4% (6/31), and 54.8% (17/31), respectively. Misidentification with YST included two isolates of C. tropicalis and one isolate each of C. glabrata, Cryptococcus neoformans, Cryptococcus uniguttulatus, and Sporobolomyces salmonicolor (Tables 2 and 3). One isolate each of Candida colliculosa, C. tropicalis, and Cryptococcus laurentii was unidentified by YST. The API failed to identify one isolate each of C. lambica, C. parapsilosis, Cryptococcus laurentii, and Pichia farinosa (Table 3). The P. farinosa unidentified by the API is unclaimed by its database. When overall correct results were considered among discrepant isolates, the enhanced performance of the YST card compared to API was statistically significant (P = 0.0176).
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TABLE 3. Results of testing discrepant isolates
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The YST card performed satisfactorily in the identification of non-Candida yeast species. All six isolates of Geotrichum klebahnii and a single isolate of G. capitatum were accurately identified by the YST card. However, one isolate of S. salmonicolor was incorrectly identified as Candida magnoliae/R. glutinis/R. mucilaginosa/Cryptococcus laurentii by YST.
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Overall, the YST card performed well and demonstrated excellent reproducibility as shown by QC and challenge set testing. Seven (C. glabrata ATCC MYA2950, C. lusitaniae ATCC 3449, C. utilis ATCC 9950, Geotrichum capitatum ATCC 28576, Kloeckera apis ATCC 32857, Prototheca wickerhamii ATCC 16529, and Trichosporon mucoides ATCC 204094) of the 12 QC isolates were retained for final use in product QC. Among clinical isolates, there was high accuracy with YST (98.5%) compared to the API, with fewer incorrect and unidentified results (Table 3). Low-discrimination results were reduced from 30.0% with API to 18.9% with YST. Low-discrimination results occur when the generated biopattern is not sufficient to discriminate between two or more taxa. For both YST and API, low-discrimination results were always observed for the following species: C. inconspicua, C. krusei, C. lambica, and G. capitatum. This is due to the fact that these species are fairly unreactive and very similar in their carbohydrate assimilation profiles. Slashline identifications were technically considered to be low discrimination and required supplemental observation or testing to resolve to a single taxon. It is important to remember that basic techniques (e.g., microscopic morphology, nitrate assimilation, and pigment production) are straightforward and should not be discounted in the resolution of low-discrimination or slashline results. In addition, the VITEK 2 software can be user configured to automatically select the most commonly occurring taxon in a specific slashline(s). In some cases (e.g., C. krusei) complete resolution is important, as it can be critical for clinical decision-making or epidemiological analysis.
In this study, YST showed definite improvement in the identification of Cryptococcus spp. Other than Cryptococcus uniguttulatus, identification of non-Cryptococcus neoformans species by YST was much improved compared to that in previous studies (4, 7). This is a welcome enhancement, considering the serious clinical implications of cryptococcal infection. A single isolate of Cryptococcus albidus was initially misidentified as Cryptococcus uniguttulatus/R. glutinis/R. mucilaginosa/Cryptococcus laurentii by YST and as Cryptococcus laurentii by API (Table 3). However, additional biopattern analysis of the YST data from the trial site indicated Cryptococcus albidus as a possible choice, and thus the identification was resolved in favor of YST.
Species of Geotrichum have been reported as difficult to identify with the fluorometric ID-YST card due to low reactivity (8). In terms of Geotrichum spp. with the VITEK 2, it is important to note that the organism can be somewhat refractory to preparation of a uniform suspension in saline prior to filling the YST card. Additional technical care must be taken in order to achieve a McFarland 2.0 turbidity, increasing the probability of a successful test. In this study, identification of Geotrichum spp. with the YST card was excellent (7/7; 100%).
The majority of discrepant isolate identifications, as determined by confirmatory testing, were resolved in favor of the YST card. In this study, discrepant results were arbitrated through the use of Wickerham liquid assimilation and fermentation testing in combination with morphological observations. Unfortunately, this classical method may take up to a month for complete analysis (23). Confirmation of discrepant yeast identifications could be addressed by the use of molecular methods, since they can be highly accurate and can be completed in as little as 24 h. Massonet and colleagues recently published a comparison of ITS2 rRNA sequencing to use of the VITEK 2 fluorometric ID-YST card (11). In addition, Hall et al. reported use of sequencing of the D2 region of the large-subunit ribosomal DNA in the identification of uncommonly encountered clinical yeast isolates (9).
A previous study at a single site evaluated the performance of the new YST card in comparison to an older fluorimetric version of the card and the use of Chromagar as a source medium for testing with the YST card (1). However, that study did not evaluate the entire range of claims made for the YST card, and so we report here a multicenter study comparison of the VITEK 2, utilizing the updated colorimetric YST card versus the API 20 AUX system for both common and rarely observed yeast and yeast-like organisms. The YST card was found to be highly accurate, correctly identifying 98.5% of clinical isolates. A compelling advantage of YST over API was fewer misidentified or unidentified results and the reduction of turnaround times for identification from 48 to 72 h to 18 h. Because of automated interpretation, results from the YST card are objective compared to the subjective observer-driven results of API. The setup of YST is simple, requires less technologist time than the API, and is less prone to operator error. We conclude that overall, the VITEK 2 with the updated colorimetric YST card is a valuable addition in the identification of medically encountered yeast species and is a useful addition to the clinical mycology laboratory.
We thank Carmen Azurin, Dora McCarthy, and Peggy Schneider; the personnel of the Mayo Clinic Mycology Laboratory, the Weill Cornell Medical Center, New York-Presbyterian Hospital Microbiology Laboratory, and the Fungus Testing Laboratory at the University of Texas Health Science Center at San Antonio; and Nancy Hayes at bioMérieux, Inc., for their expert technical assistance with this study. We also thank David H. Pincus for critical reading of the manuscript.
Published ahead of print on 31 January 2007. ![]()
Present address: bioMérieux, Inc., Durham, NC 27712. ![]()
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