Previous Article | Next Article ![]()
Journal of Clinical Microbiology, April 2007, p. 1211-1218, Vol. 45, No. 4
0095-1137/07/$08.00+0 doi:10.1128/JCM.00010-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Laboratory of Clinical Microbiology, Infectious Diseases Hospital, 54638 Thessaloniki, Greece,1 Department of Microbiology, School of Medicine, Aristotle University of Thessaloniki, 54006 Thessaloniki, Greece2
Received 3 January 2006/ Returned for modification 8 October 2006/ Accepted 16 January 2007
|
|
|---|
|
|
|---|
In the present study the value of PCR assays for the rapid diagnosis of human brucellosis in acute and relapsing forms of the disease versus the use of conventional diagnostic methods has been investigated. The methods used in the present study included four different PCR assays, blood culture, and the following serological tests: Wright's seroagglutination test (SAT), Coombs' antibrucella test (CT), and the complement fixation test (CF).
|
|
|---|
The diagnosis of brucellosis was established according to one of the following criteria: (i) isolation of Brucella spp. in blood culture and/or (ii) the presence of compatible clinical signs or symptoms, together with the presence of specific antibodies at significantly high titers or a seroconversion, or also a fourfold increase in titer between two sequential samples from the same patient (4, 5, 24). Significant titers were considered to be a SAT titer of
1/160, a CT titer of
1/320, or a CF titer of
1/16. Relapse was defined as the reappearance of the signs or symptoms of the disease and/or a new positive blood culture during the 12-month period after therapy (5). In addition, a seroconversion or a fourfold increase in titer in serological tests could be considered a sign of relapse; however, in our patients serological criteria were not used. Of the 200 patients, 164 (82%) had typical symptoms, and 36 (18%) had variable atypical signs of the disease. The antibiotic regimens used for 128 of the 200 patients included doxycycline and rifampin for 6 weeks and in the remainder included doxycycline and rifampin for 6 weeks and streptomycin for 3 weeks.
The patients were separated into two groups according to the outcome of the treatment. A total of 183 (91.5%) of them (group 1, "effective treatment") did not have any clinical signs or relapses of brucellosis for 12 months after therapy, thus establishing a successful treatment, and 17 (8.5%) patients (group 2, "ineffective treatment") had persistent clinical signs of brucellosis and/or consecutive clinically confirmed relapses, as ascertained by the reappearance of signs or symptoms of the disease. All 17 patients in this group had two relapses, and 8 of them had a third relapse, the first within 10 to 30 days after therapy and the second and third within 6 to 8 months after therapy. Therefore, the treatment of these patients was not successful, and their infections were considered to be persistent. It seems more likely that these 17 patients had a true relapse rather than a reinfection because the first episode occurred less than 1 month after the treatment was concluded. Furthermore, no new exposure could be detected for these patients at the time of the relapses. Of the 183 patients with effective treatment and the 17 patients with ineffective treatment, 8 and 6 patients, respectively, had variable focal complications such as arthritis, orchitis, spondylitis, and pericarditis at admittance. The signs and symptoms, as well as the results of the diagnostic tests, of the two groups of patients at admittance are shown in Table 1.
|
View this table: [in a new window] |
TABLE 1. Clinical manifestations and laboratory tests of 200 patients with brucellosis at admittancea
|
Bacteriological and serological methods. Blood cultures were processed with the BACTEC 9050 system (Becton Dickinson, Towson, MD) according to standard techniques (27) and were incubated for 30 days. Three blood culture specimens were obtained from each of the 200 patients at admittance. All of the Brucella strains isolated from the patients and all of the reference Brucella strains were identified and biotyped by standard techniques, including the CO2 requirement, H2S production, susceptibility to dyes (thionin, thionin blue, and basic fuchsin), agglutination in monospecific sera A and M, and lysis by phage Tblisi (1, 27). The monospecific sera and the phage were supplied by the OIE Brucellosis Reference Centre, Veterinary Laboratories Agency, Weybridge, Surrey, United Kingdom. The conventional serological methods SAT, CT, and CF were performed according to standard techniques (1) using commercially available antigens (Laboratory Diagnostics Co., Inc., Morganville, NJ; Serion Immundiagnostica GmbH, Wurzburg, Germany; and bioMerieux SA, Marcy l'Etoile, France, respectively).
Extraction of DNA. DNA from all clinical samples and bacterial strains was extracted by using a commercial purification system with columns (QIAamp Blood Midi; QIAGEN GmbH, Hilden, Germany) according to the manufacturer's instructions. The concentration and the purity of the DNA were determined spectrophotometrically by determining the A260 and A280 values.
DNA amplification. Four different PCR assays that target different gene regions of Brucella spp. were performed for the detection of Brucella DNA (PCRs A, B, C, and D). All specific primers for the PCR assays were supplied by Invitrogen Ltd., Paisley, United Kingdom.
(i) PCR A. This PCR assay amplifies a 223-bp sequence of the gene bcsp31 encoding an immunogenic outer membrane protein of 31 kDa of B. abortus, which is conserved in all Brucella species, using the specific primers B4 and B5 for this PCR assay (8). PCR was performed in a total volume of 50 µl containing template DNA (5 µl), Tris-HCl (pH 8.4, 20 mM), KCl (50 mM), MgCl2 (1 mM), a 200 µM concentration of each deoxynucleoside triphosphate (Promega, Madison, WI), a 0.5 µM concentration of each of the primers B4 and B5 (25 pmol per 50 µl), and 2 IU of Taq polymerase (Promega). This PCR consisted of an initial 5-min incubation step at 93°C, followed by 40 cycles of denaturation at 90°C for 1 min, annealing at 60°C for 1 min, and extension at 72°C for 1 min, with a final incubation step at 72°C for 10 min.
(ii) PCR B. This PCR assay amplifies a 193-bp sequence of the gene omp2 encoding an outer membrane protein of 26 kDa of B. abortus in all Brucella species, using the specific primers JPF and JPR (19). These primers, recognizing the B. abortus sequence, detect all strains of B. melitensis and B. abortus, excluding the B. suis biovars 2, 3, and 4; B. canis; and B. ovis (19). PCR was performed in a total volume of 50 µl containing template DNA (5 µl), Tris-HCl (pH 8.4, 20 mM), KCl (50 mM), MgCl2 (3 mM), a 200 µM concentration of each deoxynucleoside triphosphate, a 1 µM concentration of each of the primers JPF and JPR (50 pmol per 50 µl), and 2 IU of Taq polymerase. This PCR consisted of an initial 4-min incubation step at 94°C, followed by 35 cycles of denaturation at 94°C for 1 min, annealing at 58°C for 1 min, and extension at 72°C for 1 min, with a final incubation step at 72°C for 10 min.
(iii) PCR C. This PCR assay uses a different region of the gene omp2 of B. abortus as a target, producing a 282-bp sequence in all Brucella species, using the specific primers P1 and P2 (9). The PCR was performed in a total volume of 50 µl containing template DNA (5 µl), Tris-HCl (pH 8.4, 20 mM), KCl (50 mM), MgCl2 (2 mM), a 200 µM concentration of each deoxynucleoside triphosphate, a 1 µM concentration of each of the primers P1 and P2 (50 pmol per 50 µl), and 2 IU of Taq polymerase. This PCR consisted of an initial 3-min incubation step at 94°C, followed by 30 cycles with denaturation at 90°C for 40 s, annealing at 50°C for 1 min, and extension at 72°C for 1 min, with a final incubation step at 72°C for 10 min.
(iv) PCR D. This PCR assay amplifies the entire bp26 gene of B. melitensis 16M, encoding the BP26 protein, also named Omp28, which is identified as an immunodominant antigen (10). This PCR assay produces a 1,029-bp sequence in all Brucella species, except isolates from marine mammals, in which it produces a sequence of 1,900 bp, using the specific primers 26A and 26B (10). PCR was performed in a total volume of 50 µl containing template DNA (5 µl), Tris-HCl (pH 9.0, 10 mM), KCl (50 mM), MgCl2 (1.5 mM), a 200 µM concentration of each deoxynucleoside triphosphate, a 1 µM concentration of each of the primers 26A and 26B (50 pmol per 50 µl), and 2.5 IU of Taq polymerase. This PCR consisted of an initial 5-min incubation step at 94°C, followed by 30 cycles of denaturation at 94°C for 1 min, annealing at 58°C for 1 min, and extension at 72°C for 1 min, with a final incubation step at 72°C for 10 min.
The oligonucleotide sequences of all primers used in the present study, along with the most relevant information about them, are presented in Table 2. The reactions for all four PCR assays were performed in a programmable thermocycler without mineral oil (Gene Amp PCR System 2400; Roche Diagnostics). Amplicons were detected by fluorescence after electrophoresis in 2% agarose gel in the presence of ethidium bromide (1 µg/ml) under UV light. Positive controls derived from B. abortus biovar 1 strain 544 and B. melitensis biovar 1 strain 16M were included in all of the tests, as were negative controls that contained all of the elements of the reaction mixture except for template DNA. In order to guarantee the reliability of the results, all samples were processed in duplicate, and they produced identical positive or negative results.
|
View this table: [in a new window] |
TABLE 2. Oligonucleotide primers used in PCR assays
|
2 test. Significant differences were considered when the probability (P) was <0.05. The sensitivity, specificity, positive predictive value, and negative predictive value for each of the conventional tests and PCR assays were also calculated as described by Armitage and Berry (6). |
|
|---|
1/160, 131 (65.5%) had a CT titer of
1/320, and 155 (77.5%) had a CF titer of
1/16 at admittance. Of 200 patients, 8 (4%) were negative with blood cultures, and all of the serological methods (combined sensitivity of 96%), even though they had all of the compatible signs or symptoms of acute brucellosis. The most relevant data about the serology results in the total treatment surveillance period are presented in Table 3. The positive and negative predictive values of the serological methods are given in Table 4. (iii) All four PCR assays were carried out at admittance, and the results were positive in the buffy coat samples of the 200 (100%) patients. PCRs A and C were positive in 198 (99%) blood samples, whereas PCR D was positive in 197 (98.5%) and PCR B was positive in 196 (98%). Slightly lower sensitivities were found when serum samples were used: 97% for PCRs A and C, 96.5% for PCR D, and 95.5% for PCR B. The eight patients who were negative with all of the conventional techniques, as well as the six patients with initially negative blood cultures, were PCR positive at admittance with all four PCR assays. The positive and negative predictive values of the molecular assays were calculated as shown in Table 4. (iv) With regard to the clinical manifestations at admittance (Table 1), the proportion of focal presentations was significantly higher (P < 0.005) in the patients of group 2 (ineffective treatment) than in the patients of group 1 (effective treatment). |
View this table: [in a new window] |
TABLE 3. Results of conventional methods and PCR in 200 patients with brucellosis during treatment surveillance
|
|
View this table: [in a new window] |
TABLE 4. Efficiency of blood culture, serological testing, and PCR assays
|
0.70) at the end of therapy, while the differences in PCR results between groups 1 and 2 were significant (P < 0.005) at this time. Consequently, PCR assay proved to be useful for establishing the success of the therapy, whereas the conventional serological methods remained positive in many cases even in intermediate range titers. At the time of the relapses, 7 of these 17 patients had a positive blood culture, and only 4 of the 17 patients demonstrated a seroconversion or a fourfold increase in titer in the serological tests (Table 6), whereas all 17 patients were determined to be PCR positive in the buffy coat samples with all four PCR assays at all relapses. The results of the PCR assays with all kinds of clinical specimens at the time of the relapses are presented in Table 7. |
View this table: [in a new window] |
TABLE 5. Comparison of serological tests and PCR results between patients with effective and ineffective antibiotic treatment at the conclusion of therapy
|
|
View this table: [in a new window] |
TABLE 6. Results of blood culture and serological tests for 17 patients with relapsing brucellosis at the prerelapse and relapse periods
|
|
View this table: [in a new window] |
TABLE 7. Results of PCR assays at the time of relapses
|
Analytical sensitivity of the PCR assays. Tenfold serial dilutions in steps from 100 ng to 1 fg of isolated DNA from all of the aforementioned reference Brucella strains were used to determine the analytical sensitivity of the four PCR assays. The detection limits of the molecular methods were estimated to be 10 to 100 fg for PCR A, 25 to 250 fg for PCR B, 12.5 to 125 fg for PCR C, and 20 to 200 fg for PCR D. The sensitivity of the methods remained unchanged after the addition of 4 µg of human DNA to the samples.
|
|
|---|
In the present study, four different PCR assays were performed for the diagnosis of brucellosis in acute and relapsing forms; simple commercial methods for DNA extraction that provide a very good DNA purification were used. All four assays had an excellent specificity (100%). They also had an excellent diagnostic sensitivity of from 95.5 to 100% in acute infection, depending on the PCR assay and the type of specimen (Table 3). We found PCRs A and C to be slightly more sensitive than PCRs D and B. The diagnostic sensitivity for PCR A is similar to results reported previously (21, 23, 24, 25, 31, 39). PCR B was previously used mostly for the detection of Brucella in animals (19), and only one previously published study used this PCR assay for the detection of Brucella in human patients, with unsatisfactory results (39), compared to the sensitivity of 95.5% found in the present study. In accordance with previous results (8, 19, 31), the analytical sensitivities for PCRs A and B were estimated in the present study to be 10 to 100 fg and 25 to 250 fg, respectively. PCRs C and D have been previously used for strain differentiation of Brucella (9, 10) and, to our knowledge, no results concerning clinical specimens have been reported to date. These two PCR assays appear in the present study to be useful in the early diagnosis of acute brucellosis since they are highly sensitive, and their detection limits, estimated here for the first time, are also excellent.
The results of the present study show that the optimal clinical specimen for PCR in acute brucellosis is buffy coat. The simple method for leukocyte isolation used in the present study instead of the complicated Ficoll-Hypaque method, which has been previously used by others (21), allows the use of buffy coat as a preferable clinical specimen in clinical laboratory practice. The presence of high concentrations of leukocyte DNA, which has been previously reported to inhibit PCR (23), did not affect the amplification in any of the four PCR assays. Whole blood also proved to be a very good clinical sample for the detection of Brucella DNA. The sensitivity of the four PCR assays with whole blood was slightly less than with buffy coat; nevertheless, a sensitivity reaching 98 to 99% is still excellent. Heme compounds and other factors such as anticoagulants that have been previously reported as PCR inhibitors (23), in combination with the very small sample volume in each PCR mixture, which has been reported as a major limitation for PCR-based assays (24), could account for the few false-negative results (2 to 4 out of 200 patients, depending on the PCR assay) in acute brucellosis. The sensitivity of the four PCR assays in serum is similar to the sensitivity reported in a previous study on patients with acute brucellosis (39) using for Brucella DNA amplification the B4 and B5 primers that were used here in PCR A. Serum could be also considered a good clinical sample, with an associated sensitivity of 95.5 to 97%; however, the results of the present study show that the buffy coat and the whole-blood samples are the preferred clinical samples for the diagnosis of acute brucellosis. The false-negative results in serum (6 to 9 out of 200 patients depending on the PCR assay) might be due to the intracellular residence of Brucella in leukocytes, which results in low numbers of bacteria in serum, and also to the small size of the inoculum.
The conventional serological tests and blood cultures in acute brucellosis displayed a combined sensitivity (96%), which is comparable to the sensitivity of each of the PCR assays. However, these conventional techniques are time-consuming and difficult, they have to be carried out in combination, and in many cases a second sample has to be examined after 2 to 3 weeks. Since laboratories use various and often nonstandardized serological methods that frequently lead to false-negative and false-positive results (39), PCR appears to be a very useful test in the clinical laboratory practice and might be established as a diagnostic criterion for the diagnosis of acute brucellosis in the future. One of the main characteristics of the PCR assays that enhances their value, as the results of the present study confirm, is the ability to establish the diagnosis of brucellosis earlier than the conventional methods. This is very significant since starting the antibiotic treatment earlier may reduce the rates of the focal disease, since a correlation with the duration of illness before hospitalization has been reported (4, 5).
After the conclusion of the antibiotic treatment, all patients were strictly followed up for 1 year. A total of 183 of the 200 patients were considered completely cured (group 1), and 17 of the 200 patients had two or three clinically confirmed relapses during this period (group 2). At the conclusion of the therapeutic regimens, the differences in the proportions of positive serological results between the patients of groups 1 and 2 were not statistically significant (P
0.70, Table 4). On the other hand, PCR assays were able to clearly distinguish the patients of the two groups (P < 0.005) at that time. At the time of the relapses, only 7 of 17 patients in group 2 had a new positive blood culture indicating a relapse, and only 4 of 17 demonstrated a distinct increase in serological titer, whereas all 17 patients were PCR positive not only at the time of relapses but also during the whole follow-up period. Again, buffy coat and whole blood were the optimal clinical samples, whereas serum does not appear to be a useful clinical sample for a posttreatment follow-up. The very small number of circulating bacteria after antibiotic treatment and the small inoculum could result in the absence of the target DNA in serum and therefore account for the false-negative results. The increase in the proportion of PCR-positive samples in serum at the time of the relapses may indicate an increased bacteremia compared to the prerelapse periods. To date, no definite criteria to establish a successful therapy of brucellosis exist, and the question of whether the patients have completely recovered or may relapse is unpredictable (5). The results of the present study show that the PCR assays could become the method of choice for the follow-up of patients with brucellosis, as other authors have previously suggested (31). The use of a PCR assay at the conclusion of the therapy could provide a very useful tool, with high negative and positive predictive values for the diagnosis of an unsuccessful treatment. In the case of a positive PCR result at the end of therapy, the treatment could be continued, thus preventing a relapse. Given the high sensitivity of the PCR assays, there is always a possibility to amplify nonviable bacteria or phagocytosed microorganisms. This possibility should be considered in the interpretation of a positive result; however, it has been previously reported that this is an uncommon event (25). On the other hand, the continuance of antibiotic therapy, with a more effective therapeutic regimen if necessary, could lead to a reduction of the relapse rate. Moreover, PCR is valuable for the detection of relapses, whereas conventional methods have proved to be inadequate.
The four PCR assays evaluated here were selected because they are able to amplify genomic DNA from B. melitensis, which is the dominant species of Brucella in Greece, in order to decide which of them is more suitable for use in clinical laboratory practice. PCRs A and C, which were slightly more sensitive and had lower detection limits than PCRs B and D, were chosen for use in the routine of the clinical laboratory of the Infectious Diseases Hospital of Thessaloniki (22).
In conclusion, the results of the present study suggest that the four single-step, in-house PCR assays used here are simple, highly sensitive, specific, and relatively inexpensive, allowing the use of a PCR assay as a routine test in clinical laboratory practice. PCR assays established the diagnosis of acute brucellosis earlier than did the conventional methods and were able to detect all cases of patients whose treatments were unsuccessful, thus making PCR a reliable means for predicting an unfavorable course of the disease, whereas conventional tests could not provide such information. Furthermore, PCR assays were able to detect all relapses, whereas the conventional methods were inefficient. Therefore, PCR proved to be a very useful tool not only for the diagnosis of acute brucellosis but also as a predictive marker for the course of the disease and the posttreatment follow-up, which is valuable for the early detection of relapses.
Published ahead of print on 31 January 2007. ![]()
|
|
|---|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»