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Journal of Clinical Microbiology, October 2008, p. 3296-3302, Vol. 46, No. 10
0095-1137/08/$08.00+0 doi:10.1128/JCM.02183-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Departamento de Biología Estructural, Instituto Venezolano de Investigaciones Científicas, Altos de Pipe, Estado Miranda, Venezuela,1 Departamento de Medicina Preventiva, Facultad de Medicina, Universidad Autónoma de Madrid, Madrid, Spain2
Received 11 November 2007/ Returned for modification 24 January 2008/ Accepted 17 June 2008
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104 bacilli ml–1 of sputum to achieve a positive result (15, 35). In addition, the procedure requires the observation of from 100 to 300 fields in order to obtain accurate results (31). The sensitivity of microscopy is influenced by numerous factors, such as the prevalence and severity of disease, the quality of specimen collection, the type of specimen, the method of processing (direct or concentrated, centrifugation, liquefaction), staining, and finally, the quality of the examination (20, 23, 26, 29). In well-trained hands, the test detects tubercle bacilli in 75% of all people who have active pulmonary TB, but the sensitivity may fall to 45 to 60%, depending on the training, eye, and motivation of the laboratory technician (1). The basis of conventional light microscopy was developed more than 100 years ago, and, at present, conventional light microscopy uses carbolfuchsin Ziehl-Neelsen or Kinyoun acid-fast stains. Fluorescence microscopy with fluorochrome dyes such as auramine O or auramine-rhodamine is reputed to have higher degrees of sensitivity and specificity and is thus a more accurate test for the diagnosis of TB (16, 32). However, it is mainly performed in developed countries because it is more expensive than the conventional method, as it requires unstable and expensive fluorescent staining reagents, which increases the cost of the assay, thus hindering its widespread use in developing countries (32). Actions are required to diminish that disadvantage and to allow the wider applicability of fluorescence microscopy in developing countries.
Intrinsic fluorescence (autofluorescence) is a characteristic previously described in a few microorganisms that allows their detection without the need for fluorescence staining and has been used for the detection of bacterial cells (6). Here we report for the first time that the mycobacteria, including Mycobacterium tuberculosis, emit autofluorescence in the cyan range of the visible spectrum. Autofluorescence was first explored with cultured microorganisms; then with experimentally infected macrophages, which were used to mock a natural intracellular infection; and finally, with sputum specimens spiked with M. tuberculosis and submitted to the decontamination processes routinely used in diagnostic laboratories.
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TABLE 1. Microorganisms used in this study
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Pathogenic strains were grown and manipulated inside a biosafety level 3 containment facility.
Macrophage infection. To test whether the infection of macrophages can be tracked by using cyan autofluorescence, THP-1 cells were infected with M. tuberculosis H37Rv. THP-1 cells were grown in RPMI 1640 (Gibco, BRL) supplemented with 10% fetal calf serum, 25 mM HEPES, 2 mM glutamine, penicillin (10,000 µg ml–1), and streptomycin (10,000 µg ml–1) at 37°C in 5% CO2. The cells were subcultured every 3 days and passaged at least one time in fetal calf serum-supplemented antibiotic-free RPMI 1640 growth medium. Before infection, 2.5 x 105 macrophages were differentiated in eight-well Nunc Lab-Tek chamber slides by the addition of 100 µM phorbol-12-myristate-13-acetate (Sigma) and 100 U ml–1 of recombinant human gamma interferon (specific activity, 2 x 107 U mg–1; Abcam) for 24 h at 37°C in a 5% CO2 atmosphere.
M. tuberculosis inocula were prepared by resuspending the bacteria in warm RPMI 1640 medium at a concentration of 2 x 106 bacilli ml–1, and the inocula were used to infect activated THP-1 cells at a ratio of 10:1 (mycobacteria to macrophages). At 3 h postinfection, the cells were washed extensively with PBS (pH 7.4) to remove the extracellular bacilli and fixed with 4% paraformaldehyde for 30 min at 37°C. Finally, infected macrophages from two wells were stained with 25% (wt/vol) fluorescein diacetate (FDA; Sigma) for microscopic observation.
Fluorescence microscopy and image analysis. The microorganisms were photographed with a cooled Orca 12-ERG digital charge-coupled-device camera (Hamamatsu Photonics) mounted on a Nikon E600 fluorescence microscope through a x100 (numerical aperture [NA], 1.3) oil immersion objective. Images were taken, and the images were processed with MetaMorph software (Universal Imaging Corporation). The cells were first photographed in the difference interference contrast mode and were then photographed with a cyan GFP filter (excitation, 426 to 446 nm; emission, 460 to 500 nm) to capture mycobacterial autofluorescence.
M. tuberculosis-infected macrophages grown in chamber slides were visualized with the same equipment through a x40 (NA, 0.55) objective and photographed as described above for the detection of mycobacterial autofluorescence. A B2-A filter (excitation, 450 to 490 nm; emission, 515 nm) was used to document FDA staining and the GFP transformants.
Confocal laser scanning microscopy. Bacteria were grown until they reached the exponential phase of growth, and aliquots were twice washed with PBS. M. tuberculosis was heat inactivated at 80°C for 20 min and washed twice in PBS. Aliquots of 100 µl were resuspended in PBS and filtered through a 0.2-µm-pore-size GTTP filter (Millipore, Bedford, MA). The filters were mounted on a slide by using mounting medium (Vectashield; Atom). Cell images were obtained with a Leica DM IRE2 inverted microscope equipped with a Leica TCS SP2 time confocal scanner. The samples were excited with an argon ion laser by using the 405-nm and 488-nm lines. A 430- to 630-nm band-pass filter was used for the scanning emissions. A HCX PL APO lambda blue x63 (NA, 1.2) water objective was used for all scans.
Effects of heat treatment and pH on M. tuberculosis autofluorescence. In order to investigate the effect of high temperature on autofluorescence, samples of M. tuberculosis cells from a liquid culture were harvested at the exponential phase and heat treated (20 min, 80°C). To determine the effect of pH, exponential-phase M. tuberculosis cultures were harvested by centrifugation and the cells were resuspended in the same volume of phosphate or borate solutions buffered to pHs ranging from 6 to 10. The fluorescence of aliquots of 150 µl was measured by fluorimetry.
Processing of sputum samples. Pooled sputum samples that were smear negative for acid-fast bacilli and that were obtained from the Biomedicine Institute (Caracas, Venezuela) were irradiated with UV for 15 min to destroy microorganisms and were spiked with known concentrations of M. tuberculosis, as determined by measurement of the optical density at 640 nm (OD640) and the numbers of CFU per ml. The number of CFU was calculated by plating serial dilutions of the M. tuberculosis suspensions on 7H10 medium (Himedia). Aliquots of 1 ml were dispensed into 2-ml screw-cap tubes. An equal volume of a liquefying reagent, such as NaOH, sodium N-acetyl cysteine (NALC-NaOH), sodium hypochlorite (NaOCl), dimethyl benzyl lauryl ammonium bromide (Gerdex), sodium dodecyl sulfate-sodium hydroxide (SDS-NaOH), or dithiothreitol (DTT), was added; and the seeded sputa were incubated at 37°C for 15 min with gentle agitation. The samples were left on the bench for 15 min at room temperature in order to allow sedimentation of the sputum (33). Duplicates were left on the bench overnight at room temperature, when indicated. The supernatant was carefully poured off, and aliquots (200 µl) of the sputum sediment were used for fluorescence measurement. The control samples for each experiment included M. tuberculosis-free sputum containing bacterial culture medium and the liquefying agents.
Fluorimetry. The fluorescence of M. tuberculosis in culture suspensions and spiked sputa was directly measured in a 96-well microplate reader (Genius Tecan) by using a filter combination for cyan (excitation, 430 ± 20 nm; emission, 480 ± 20 nm). The emitted cyan fluorescence was expressed as the number of relative fluorescence units (RFUs), which was corrected by subtracting the fluorescence of the solution used to resuspend the bacilli in each experiment. The fluorescence emission was determined from at least three different preparations of each sample. RFUs of >15 to 20% of the background were considered to be indicative of cyan autofluorescence.
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FIG. 1. Fluorescence microscopy. The exposure time was 200 µs. The cells were photographed by using a cyan GFP filter cube (excitation, 426 to 446 nm; emission, 460 to 500 nm). Bar, 3 µm.
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FIG. 2. Visualization of M. tuberculosis inside macrophages. THP-1 cells were infected with M. tuberculosis H37Rv (stained with FDA) or M. tuberculosis bearing plasmid pGFP22-4 and visualized by fluorescence microscopy with a B2-A filter (green fluorescence) or a cyan GFP filter (cyan fluorescence). With both filters, M. tuberculosis was observed as green as well as cyan bacilli inside the infected macrophages.
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FIG. 3. Emission spectra of Mycobacterium species recorded at an excitation wavelength of 405 nm.
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FIG. 4. Effect of heat treatment (A) and pH (B) on the cyan autofluorescence of M. tuberculosis. The fluorescence emissions from cultures at room temperature (RT) or that had previously been heat inactivated for 20 min (80°C) were calculated once the fluorescence of the broth medium (A) or the buffer used to resuspend the bacteria (B) was subtracted. PPB, potassium phosphate buffer; SBB, sodium borate buffer; 6 to 10, pHs 6 to 10. The bars and the error bars show the means and the standard deviations, respectively, of at least three separate determinations.
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Influence of standard methods of sputum decontamination on M. tuberculosis autofluorescence. The cyan autofluorescence of the seeded sputa was detected with all clarifying agents except NaOCl. This molecule showed a high level of intrinsic fluorescence that interfered with that of M. tuberculosis, which, as a consequence, was undetectable. When chemical reagents other than NaOCl were considered, the levels of the autofluorescence at room temperature were similar regardless of the liquefying agent used. However, drastic differences were found when seeded sputa were incubated at 80°C for 20 min (Fig. 5). The autofluorescence increased about 10 times when the seeded sputa were heat inactivated and treated with NaOH or NALC-NaOH. In the presence of DTT, the autofluorescence showed a moderate increase when the bacteria were heated. On the contrary, heat inactivation in the presence of other reagents, such as dimethyl benzyl lauryl ammonium bromide or SDS-NaOH, hindered the detection of the autofluorescence, probably due to the lysis of the bacilli under these conditions (Fig. 5).
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FIG. 5. Effect of decontamination on the detection of the M. tuberculosis cyan autofluorescence from sputum. Fluorescence emission was measured from samples without heat treatment (gray bars) and heat inactivated at 80°C for 20 min (white bars). The fluorescence emission from each seeded sputum specimen was calculated once the fluorescence of sterilized sputum in 7H9 broth without M. tuberculosis and the liquefying agents was subtracted. RT, room temperature.
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The autofluorescence of M. tuberculosis was detected with all the concentrations of bacilli assayed, but overnight sedimentation rendered the best results. A better correlation between the fluorescence emissions and the bacillus concentration was observed when NALC-NaOH was used. Overnight sedimentation improved the rate of detection of the autofluorescence of seeded sputum liquefied with NALC-NaOH 1.4 times (Fig. 6).
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FIG. 6. Range of detection of the M. tuberculosis cyan autofluorescence in sputum. Liquefying agents (NaOH or NALC-NaOH) were added to seeded sputa containing known concentrations of M. tuberculosis cells. The fluorescence emission was measured from sedimented samples after 15 min and overnight (o/n) sedimentation and was calculated by subtracting the fluorescence of sterilized sputum in 7H9 broth without M. tuberculosis and the liquefying agents. The bars and the error bars show the means and standard deviations, respectively, of at least three separate determinations.
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WHO strongly recommends the use of the sputum smear examination as the primary tool for case detection and the diagnosis of TB as a pivotal element of the directly observed therapy strategy. Sputum smear examination is the preferred screening test for the detection of M. tuberculosis in developing countries, since this technique is simple and inexpensive and allows the detection of infectious cases. However, WHO (http://www.who.int/tb/features_archive/global_plan_to_stop_tb/) has also recognized the significant limitations of standard direct sputum smear microscopy. The requirement of time-consuming slide examination by light microscopy of two or three sputum samples and the training needed for the application of the technique imply a heavy workload on already overstretched health care systems in the developing world. The use of fluorescence microscopy decreases the run time for sample examination and shortens the time required to obtain results. Unfortunately, the cost derived from the requirement for unstable and expensive fluorescent reagents, such as auramine-rhodamine, is hindering the use of fluorescence microscopy in developing countries (32).
In this work we explored the ability of M. tuberculosis to autofluoresce in order to improve the detection of the tubercle bacilli in clinical samples. Very few studies on the use of autofluorescence for the detection of bacteria have been reported (2, 14). Some bacteria exhibit spontaneous emission spectra following excitation at specific wavelengths. The energy of the photons emitted depends on the intrinsic fluorophores retained, such as protein tryptophans, nucleic acids, and coenzymes (19), or on the production of other fluorescent substances (4, 21). This work shows for the first time that M. tuberculosis can easily be detected by its intrinsic autofluorescence in the cyan emission spectrum as a brilliant fluorescent bacillus in vitro as well ex vivo during macrophage infection (Fig. 1 and 2). In fact, the cyan fluorescence of M. tuberculosis cells was as brilliant as that of M. tuberculosis cells expressing cytoplasmic GFP or FDA-stained bacilli (Fig. 2).
Confocal laser scanning microscopy demonstrated that the mycobacteria exhibited a unique emission maximum at 475 nm when they were excited at 405 nm (Fig. 3), suggesting that the autofluorescence of mycobacteria is possibly due to the fluorescence emitted by the coenzyme F420 or its biosynthetic intermediate, FO (5). F420/FO shows a bright blue-green fluorescence with a maximum of about 470 nm when cells are excited with a laser at a wavelength of 405 nm (11, 12). F420 is a two-electron transfer coenzyme which has 7,8-didemethyl-8-hydroxy 5-deazaflavin, a phospholactyl moiety, and various numbers (two to six) of glutamate residues. FO contains a deazaflavin ring and ribityl sugar but lacks the phospholactyl group and glutamate moieties (5). Coenzyme F420 is present in some members of three distantly related groups of prokaryotes: archaea, aerobic actinomycetes, and cyanobacteria (28). The presence of F420/FO has previously been reported in Mycobacterium avium, Mycobacterium smegmatis, Mycobacterium fortuitum, Mycobacterium bovis BCG, Mycobacterium phlei, and M. tuberculosis (5, 9, 17, 24).
The autofluorescence of the M. tuberculosis cultures was appreciably increased by high temperature and a basic pH (Fig. 4), perhaps due to spectral changes in F420 under these conditions (27).
The role of F420 in Mycobacterium species is poorly understood. M. tuberculosis encodes four glucose-6-phosphate dehydrogenases, two of which (fgd-1 and fgd-2) require F420 as a cofactor (8). The loss of F420 biosynthesis or the inability to reduce this cofactor by Fgd-1 results in resistance to nitroimidazo[2,1-b] oxazine (PA-824), a drug that shows activity against the tubercle bacilli under both aerobic and anaerobic conditions (22, 34). In addition, it has been suggested that reduced F420 has a role in the low-redox-potential electron transfer reactions that would be associated with the survival of M. tuberculosis under anaerobiosis (7).
When M. tuberculosis cells were observed under the fluorescence microscope, the autofluorescence decayed quickly, but micrographs could be made (Fig. 1 and 2). The decay of the autofluorescence may result from the photoreduction of F420, as was observed in methanogenic bacteria (10, 11, 12). However, fading of the autofluorescence was not detected when the emitted light was detected by spectroscopy, probably due to the lower-power lamp used in the fluorimeter.
Although the autofluorescence of mycobacteria is shared by Nocardia spp., it was not observed in other frequent respiratory pathogens, such as S. pneumoniae and H. influenzae. Bacteria in the genus Nocardia are closely related to mycobacteria; they also synthesize the coenzyme F420 (9), and like mycobacteria, they have a cell envelope with high lipid content, which also allows the cell to be stained by carbolfuchsin Ziehl-Neelsen. Thus, the application of autofluorescence to the identification of M. tuberculosis is likely to present the same limitations in specificity as microscopy of acid-fast bacilli.
Some chemical reagents, such as NaOH, NALC-NaOH, and NaOCl, are currently used to liquefy and decontaminate the sputum, which is further concentrated by sedimentation or centrifugation to increase the sensitivity of detection of the bacilli (33). Since sputum samples are the most common clinical specimens analyzed for the diagnosis of TB and because clarification is strictly required to handle sputa, we sought to examine the effects of these and other reagents on the mycobacterial autofluorescence in seeded sputa. We found that the fluorescence emission of the seeded sputa liquefied with NaOH or NALC-NaOH and treated with heat was considerably higher that that when any other decontaminating agent was used. We speculate that the basic pH of these liquefaction agents avoids the reduction of F420/FO and, together with heat treatment, increases the natural autofluorescence of M. tuberculosis in the seeded sputum samples.
Our preliminary results showed that under the assay conditions used, at least 7.8 x 105 tubercle bacilli per ml of sputum could be detected by autofluorescence (Fig. 6). Hobby et al. (15) related the bacillus microscopy results to the mycobacterial concentrations in the sputum of patients with TB. They established that sputum samples with microscopy scores of 3+ have from 1.08 x 106 to 4.02 x 107 bacilli ml–1, while sputum samples with scores of 2+ have from 2.4 x 104 to 1.41 x 106 bacilli ml–1. Hence, the results of this work suggest that the autofluorescence of M. tuberculosis could have a sensitivity similar to that of light microscopy examination, but with the advantage that it avoids the staining step in the procedure.
Fluorimetry in a 96-well plate format might become a user-friendly tool for the screening of sputum samples for M. tuberculosis, thus enabling the simultaneous examination of multiple samples. It has the added advantages that it employs a lower sample volume, is easy to perform by any laboratory technician, and is fast. In addition, the results are easily interpretable with simple training. All these characteristics make the use of cyan autofluorescence a potential method for the detection of mycobacteria, including M. tuberculosis.
In order to determine the applicability of the autofluorescence method in the field, the analysis of sputum samples from TB patients from diverse regions of Venezuela is in progress. The application of autofluorescence will improve the detection of tubercle bacilli.
This work was partially supported by European Union grant ICA4-CT-2002-10063 and Fonacit (Venezuela) grant S12001000706.
Published ahead of print on 25 June 2008. ![]()
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