Previous Article | Next Article 
Journal of Clinical Microbiology, October 2008, p. 3384-3390, Vol. 46, No. 10
0095-1137/08/$08.00+0 doi:10.1128/JCM.00319-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
Proportions of Mycobacterium massiliense and Mycobacterium bolletii Strains among Korean Mycobacterium chelonae-Mycobacterium abscessus Group Isolates
Hee-Youn Kim,1
Yoonwon Kook,2
Yeo-Jun Yun,1
Chan Geun Park,1
Nam Yong Lee,3
Tae Sun Shim,4
Bum-Joon Kim,1 and
Yoon-Hoh Kook1*
Department of Microbiology, Cancer Research Institute, Institute of Endemic Diseases, SNUMRC, Seoul National University College of Medicine, and Clinical Research Institute, Seoul National University Hospital, Seoul 110-799,1
Life Science and Technology, Underwood International College, Yonsei University, Seoul,2
Department of Laboratory Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Suwon,3
Division of Pulmonary and Critical Care Medicine, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea4
Received 15 February 2008/
Returned for modification 23 April 2008/
Accepted 19 August 2008

ABSTRACT
Korean isolates of the
Mycobacterium chelonae-
Mycobacterium abscessus group, which had been isolated from two different
hospitals in South Korea, were identified by PCR restriction
analysis (PRA) and comparative sequence analysis of 16S rRNA
genes,
rpoB, and
hsp65 to evaluate the proportion of four closely
related species (
M. chelonae,
M. abscessus,
M. massiliense,
and
M. bolletii). Of the 144 rapidly growing mycobacterial strains
tested, 127 strains (88.2%) belonged to the
M. chelonae-
M. abscessus group. In this group,
M. chelonae,
M. abscessus,
M. massiliense,
and
M. bolletii accounted for 0.8% (
n = 1), 51.2% (
n = 65),
46.5% (
n = 59), and 1.6% (
n = 2), respectively. Two isolates
which showed discordant results,
M. massiliense by
rpoB sequence
analysis and
M. abscessus by
hsp65 sequence analysis, were finally
identified as
M. massiliense based on the additional analysis
of
sodA and the 16S-23S internal transcribed spacer.
M. abscessus group I isolates previously identified by
hsp65 PRA were all
found to be
M. abscessus, whereas group II isolates were further
identified as
M. massiliense or
M. bolletii by sequencing of
rpoB and
hsp65. Smooth, rough, or mixed colonies of both
M. abscessus and
M. massiliense isolates were observed.
M. massiliense strains that were highly resistant to clarithromycin had a point
mutation at the adenine at position 2058 (A
2058) or 2059 (A
2059)
in the peptidyltransferase region of the 23S rRNA gene.

INTRODUCTION
Rapidly growing mycobacteria (RGM), which include members of
the
Mycobacterium fortuitum complex, the
M. chelonae complex,
and the
M. smegmatis complex, are defined as mycobacteria that
grow and form visible colonies on solid agar media within 7
days. Because of their low virulence, they usually cause respiratory
tract or disseminated infections in persons with predisposing
factors or who are immunosuppressed (
27,
29,
32). However, recently,
infections in immunocompetent persons have been reported more
frequently. These cases are soft-tissue infections associated
with trauma and injection and epidemics or pseudoepidemics that
have occurred in hospitals (
6,
12). Ninety-five percent of soft-tissue
RGM infections are caused by members of the
M. chelonae complex
(
7), which comprises
M. chelonae,
M. abscessus, and
M. immunogenum.
However, the situation is complex for the clinical microbiologist
who must rapidly and correctly identify isolates because there
are reports of heterogeneity in
M. abscessus isolates. Two
M. abscessus groups (groups I and II) were reported on the basis
of
hsp65 PCR-restriction fragment length polymorphism (RFLP)
(
11) and sequence analysis (
21) of
hsp65. High heterogeneity
of
M. abscessus isolates was also shown by
rpoB analysis (
2).
Meanwhile, new RGM species were reported:
M. massiliense (
4)
and
M. bolletii (
1). These were very closely related to
M. abscessus and
M. chelonae but showed different susceptibility to clarithromycin,
and their pathogenic potentials were shown by infections in
immunocompetent and immunocompromised hosts (
13,
19).
RGM infections are also common in South Korea (24, 27, 34). M. abscessus is the most frequently isolated nontuberculous mycobacterium (NTM) in South Korea, second to the M. avium complex (20), in contrast to other countries such as the United States, Japan, and Sweden (9, 28, 39). In addition, there was an epidemic associated with intramuscular injection of an antimicrobial agent, which seemed to be caused by M. abscessus, in 2005 at Icheon, South Korea. However, the causative microorganism was finally identified as M. massiliense based on rpoB and hsp65 sequence analysis (19). Thus, because of the close relationship between M. abscessus and two recently reported species, M. massiliense and M. bolletii, we speculated that these were not newly found in the mycobacterial populations but rather had been collectively identified as M. abscessus or M. chelonae-M. abscessus group species in previous studies.
In the present study, we investigated several issues related to the heterogeneity of the M. chelonae-M. abscessus group. One is the isolation rates of four closely related species, M. chelonae, M. abscessus, M. massiliense, and M. bolletii in Korean clinical isolates. The others are colony morphology and susceptibility to clarithromycin. The first might be related to virulence (8, 14), and the last is important for treating M. abscessus infection (7). We reidentified a group of M. abscessus isolates (Asan Collection) that had been previously isolated and identified by hsp65 PCR restriction analysis (PRA) and prospectively identified another group of RGM isolates (Samsung Collection), which were mainly isolated from respiratory specimens collected over 2 years, using hsp65 and rpoB sequence analysis (19, 38).

MATERIALS AND METHODS
Bacterial strains.
Two different groups of RGM isolates obtained from two hospitals
in Seoul, South Korea, were used. One group (42 strains of
M. abscessus), which had been previously isolated from patients
with respiratory infection and identified by
hsp65 PRA, was
provided by Tae Sun Shim, Asan Medical Center, South Korea.
These isolates were used for reidentification. The other group
comprised 102 RGM strains isolated from 99 patients with respiratory
infection and was provided by Nam Yong Lee, Samsung Medical
Center. Isolates in the Samsung Collection were collected from
June 2005, just after recognition of an injection-associated
M. massiliense epidemic (
19), until May 2007. The type strains
of
M. abscessus (ATCC 19977),
M. massiliense (CIP 108297), and
M. bolletii (CIP 108541) were used for comparison. RGM isolates
cultivated on Ogawa media were subcultured on blood agar plates
at 37°C and 5% CO
2 for 4 days to observe colony morphology
and purity and then used for species identification based on
hsp65 PRA (
11) and PCR sequencing of
rpoB (
19) and
hsp65 (
38).
DNA extraction and PCR.
Total DNAs were extracted from cultured colonies using the bead beater-phenol extraction method (17) and used as templates for PCR. The following primer pairs were used: 285 (5'-GAG AGT TTG ATC CTG GCT CAG-3') and 244 (5'-CCC ACT GCT GCC TCC CGT AG-3') for 16S rRNA gene (351 bp) (36), RGMF (5'-GAC GAC ATC GAC CAC TTC GG-3') and RGMR (5'-GGG GTC TCG ATC GGG CAC AT-3') for rpoB PCR (365 bp) (19), and Tb11 (5'-ACC AAC GAT GGT GTG TCC AT-3') and Tb12 (5'-CTT GTC GAA CCG CAT ACC CT-3') for hsp65 (441 bp) (38). Template DNA (ca. 50 ng) and 20 pmol of each primer were added to a PCR mixture tube (AccuPower PCR PreMix; Bioneer, Daejeon, South Korea) containing 1 unit of Taq DNA polymerase, 250 µM of deoxynucleotide triphosphate, 10 mM Tris-HCl (pH 8.3), 10 mM KCl, 1.5 mM MgCl2, and gel loading dye. The final volume was adjusted to 20 µl with distilled water, and the reaction mixture was then amplified as previously described (19, 36, 38) using a model 9700 Thermocycler (Perkin-Elmer Cetus). Sequencing of sodA and the 16S-23S rRNA gene internal transcribed spacer (16S-23S ITS) and 23S rRNA gene sequencing were performed to resolve discrepancies in identification by rpoB and hsp65 analysis and to identify mutations associated with clarithromycin resistance, respectively (3, 25, 30).
hsp65 PRA.
PRA was performed as previously described (11). Briefly, 10 µl of the amplified PCR products was transferred to fresh microcentrifuge tubes and digested with HaeIII (TaKaRa, Shiga, Japan) or BstEII (Promega, Madison, WI) according to the supplier's instructions. Following digestion, the mixtures were electrophoresed on 3% agarose gel (at 100 V for 30 min). The DNA bands were visualized by ethidium bromide staining and photographed. For those strains that did not show clear PRA results, sizing of the DNA fragments on the basis of their determined hsp65 sequences was performed by MapDraw (version 3.14; DNASTAR, Madison, WI) and compared to the previous report (11).
Nucleotide sequencing.
PCR products were purified using Qiaex II gel extraction kits (Qiagen, Hilden, Germany) and were sequenced directly using forward and reverse primers with an Applied Biosystems automated sequencer (model 377) and BigDye Terminator cycle sequencing kits (Perkin-Elmer Applied Biosystems, Warrington, United Kingdom). Both strands were sequenced as a cross-check.
Sequence analysis.
Determined partial 16S rRNA gene, rpoB, and hsp65 sequences (306 bp, 306 bp, and 401 bp, respectively) were aligned using the ClustalW algorithm in MEGA4 (37). Phylogenetic trees were inferred from partial rpoB and hsp65 nucleotide sequences of Korean isolates in this study, and those of RGM type strains were retrieved from GenBank using the neighbor-joining method in MEGA4 (37) and median network in SplitsTree4 (15).
Susceptibility testing for clarithromycin.
MICs of clarithromycin were determined by the broth dilution method in microtiter plates (16) with slight modification. Nine randomly selected strains of M. abscessus, nine strains of M. massiliense, and two M. bolletii isolates were used for clarithromycin susceptibility testing. M. abscessus ATCC 19977T, M. massiliense CIP 108297T, and M. bolletii CIP 108541T, whose susceptibilities to clarithromycin are known, were used as controls. Briefly, pure cultured colonies were transferred to 7H9 broth (Becton Dickinson, Piscataway, NJ) with 0.02% Tween 80 (Junsei Chemical, Tokyo, Japan) and 0.2% glycerol (Sigma) in a tube and vigorously vortex mixed to a density equivalent of 0.5 on the McFarland scale. Bacterial suspensions (150 µl) were transferred to the wells of microtitration plates, which contained clarithromycin (Boryung, Seoul, South Korea) (150 µl) solubilized in 20% dimethyl sulfoxide and twofold serially diluted with 7H9 broth from 256 to 0.06 µg/ml. The plates were incubated at 37°C for 72 h. Bacterial growth was observed, and the MICs were determined. The susceptibility was determined according to the breakpoints recommended by the Clinical and Laboratory Standards Institute (CLSI) (10).
Separately, the 23S rRNA gene sequences of these 20 isolates and 3 type strains were analyzed (25) to observe any point mutation at the adenine at position 2058 (A2058) or at A2059 in the peptidyltransferase region of the 23S rRNA gene.
Nucleotide sequence accession numbers.
Determined rpoB and hsp65 sequences that were different from reference strains have been deposited in GenBank under accession no. EU732712 to EU732723.

RESULTS
Identification by hsp65 PRA.
Of the 42 reidentified
M. abscessus strains (Asan Collection),
28 (66.7%) and 14 strains (33.3%) belonged to
M. abscessus groups
I and II, respectively (Table
1). Of the 102 strains in the
Samsung Collection, 85 strains (83.3%) belonged to the
M. chelonae-
M. abscessus group, and these included 37 (36.2%) strains of
M. abscessus group I, 47 strains (46.1%) of
M. abscessus group
II, and 1 strain (1.0%) of
M. chelonae (Table
1). In addition,
M. fortuitum (nine strains, 8.8%),
M. peregrinum (four strains,
3.9%), and
M. porcinum (three strains, 2.9%) were identified
among the remaining mycobacteria.
View this table:
[in this window]
[in a new window]
|
TABLE 1. Distribution of M. chelonae-M. abscessus group isolates identified by hsp65 PCR restriction analysis in this study
|
Identification by gene sequence analysis.
Species identification of the RGM strains was accomplished by
BLAST search to measure the similarities and infer the constructed
phylogenetic trees. The
M. chelonae-
M. abscessus group (42 Asan
and 85 Samsung strains) identified by
hsp65 PRA were separated
into four different species (
M. chelonae,
M. abscessus,
M. massiliense,
and
M. bolletii) (Table
2). Based on the
rpoB sequence analysis,
all of the
M. abscessus group I strains (65 strains) were identified
as
M. abscessus. Their
rpoB sequence similarities to the reference
sequences were 99.3 to 100%. The 61
M. abscessus group II strains
were identified as
M. massiliense (59 strains) and
M. bolletii (2 strains). These strains showed
rpoB sequences identical to
those of
M. massiliense and
M. bolletii, respectively, but relatively
low (97.3 to 98.7%) sequence similarity to that of the
M. abscessus reference strain. Interestingly, two strains (1.4%) showed discordant
results between
rpoB and
hsp65 sequence analysis. These strains
were
M. massiliense based on the
rpoB sequences but were
M. abscessus based on
hsp65 sequences analysis. However, gene analysis
of
sodA (441 bp) and the 16S-23S ITS (216 bp) indicated that
these two strains were
M. massiliense (similarity of 100%) (Table
2).
View this table:
[in this window]
[in a new window]
|
TABLE 2. Comparison of identification results for M. chelonae-M. abscessus group isolates using hsp65 PCR-RFLP and sequence analysis of rpoB and hsp65
|
The other 17 mycobacterial strains were identified as
M. fortuitum (7 strains),
M. peregrinum (4 strains),
M. porcinum (2 strains),
M. senegalense (1 strain), and
M. mageritense (1 strain) by
rpoB and
hsp65 sequence analysis. However, two strains could
not be identified exactly. One of these two strains was genetically
close to
M. septicum (
rpoB, 98.7%;
hsp65, 98.3%), and one was
close to
M. peregrinum (
rpoB, 98.7%;
hsp65, 98.3%). By additional
16S rRNA gene and ITS sequence analysis these were finally identified
as
M. septicum and
M. peregrinum (Table
2).
The relationships between tested RGM isolates and the type strains of M. chelonae, M. abscessus, M. immunogenum, M. massiliense, and M. bolletii are shown by the rpoB and hsp65 trees (Fig. 1). The M. chelonae-M. abscessus group formed distinct clusters in both trees, showing their high similarity in terms of rpoB and hsp65 sequences. All the M. abscessus group I and II strains were separated from M. chelonae and M. immunogenum by long branches and formed two clusters (groups I and II in Fig. 1). The M. abscessus type strain and isolates formed group I, whereas M. massiliense and M. bolletii type strains and isolates formed group II. All the strains of hsp65 PRA groups I and II belonged to groups I and II in both trees. The bootstrap values supporting their relationships were high (87 and 98% for each tree).
Colony morphology.
Subcultured colonies of 85
M. chelonae-
M. abscessus group isolates
(Samsung Collection) were analyzed on blood agar plates. In
general, isolates with rough colonies (52 strains, 61.2%) were
more frequently isolated than those with smooth colonies (24
strains, 28.2%). The proportions of smooth colonies in
M. abscessus and
M. massiliense isolates were similar (27.1% and 28.2%, respectively).
Most of the isolates showed one of the two types. However, mixed
colonies of seven strains (8.2%) of
M. abscessus from seven
different patients were observed (Table
3).
Susceptibility to clarithromycin.
MICs for randomly selected
M. abscessus (9 strains),
M. massiliense (9 strains), and
M. bolletii isolates (2 strains) were compared
with those for their type strains. MICs for the 10
M. abscessus strains ranged from 0.25 to 64 µg/ml. Four susceptible,
four resistant, and two intermediate strains were determined
on the basis of CLSI criteria (
10). Three
M. bolletii strains
were resistant to clarithromycin (MICs, 8 to 16 µg/ml).
Interestingly,
M. massiliense strains were either markedly susceptible
(MICs, 0.125 to 0.5 µg/ml) or highly resistant (MICs,
>256 µg/ml) to clarithromycin. There was no intermediate
group as for
M. abscessus. In addition, three highly resistant
M. massiliense strains had a point mutation at the adenine at
position 2058 (A
2058) or 2059 (A
2059) in the peptidyltransferase
region of the 23S rRNA gene. However, those mutations were not
found in the four clarithromycin-resistant isolates of
M. abscessus and two
M. bolletii isolates tested in this study (Table
4).

DISCUSSION
Recently, reports on the rapidly growing mycobacterial infections
in various clinical situations have greatly increased. Among
the RGM species, the
M. chelonae-M. abscessus group is the most
common causative agent of soft-tissue infections (
7). Though
there have been continuous taxonomic changes of
M. chelonae and
M. abscessus,
M. abscessus is not considered a subspecies
of
M. chelonae (
26) but rather a separate species (
22). However,
another genotype analysis, such as
hsp65 PRA (
11), and sequence
analysis of
hsp65 (
21) and
rpoB (
2) again revealed genetic heterogeneity
in the
M. abscessus population. Furthermore, making things more
complex,
M. massiliense and
M. bolletii were newly reported
and are very closely related to
M. abscessus (
1,
4). Human infections
and intracellular survival, which showed their pathogenic potential,
were reported (
1,
4,
40).
When we used sequence analysis to identify mycobacteria, we also found several RGM isolates that were closely related but could not be identified as M. abscessus or M. chelonae. In addition, after the identification of the causative agent in an epidemic associated with intramuscular injection (19), the possibility that M. massiliense and M. bolletii could have been identified as M. abscessus was raised. By confirming that M. abscessus hsp65 PRA group II strains are M. massiliense by sequence analysis, we could in part simplify the heterogeneous structure of the M. abscessus population in this study. M. massiliense accounted for a large proportion of clinical RGM isolates. Nearly one-half of M. abscessus isolates could not be properly identified prior to the different phenotype and genotype reports on M. massiliense and M. bolletii as new species. The rate of isolation of M. massiliense in South Korea is much higher than that in a recent report (33). It was not evaluated by a nationwide surveillance study. However, because the two groups of clinical isolates used in this study were collected from two different hospitals (Asan and Samsung) where the NTM infections are mainly reported (18, 20, 23), our results may in part represent the proportions of M. chelonae, M. abscessus, M. massiliense, and M. bolletii isolates in South Korea.
In order to manage infectious diseases, it is important to correctly identify the causative agents and to know their susceptibility to antimicrobial agents since different treatment regimens are required for each infectious disease. Although several unique phenotypes that can differentiate M. massiliense and M. bolletii from M. abscessus and M. chelonae have been identified (1, 4, 22), they are not easy to characterize in routine clinical laboratories. In general, molecular methods are preferred over phenotype analysis. For genotype identification of these causative agents, PCR or PCR-linked methods have been used. Although PRA is a rather simple and rapid method, PCR sequencing is more useful for species identification, as shown above. Since the early 1990s, genotype analysis, especially PCR sequencing, has greatly contributed to the classification and identification of mycobacterial species. Nucleotide sequence information for the 16S rRNA genes has been widely used to find and define new species of mycobacteria (31, 35). However, 16S rRNA gene sequence analysis has critical limitations in that the pathogenic M. kansasii cannot be distinguished from nonpathogenic M. gastri. In the first report on M. massiliense, because its 16S rRNA gene sequence was identical to that of M. abscessus, other gene sequences (hsp65, rpoB, and 16S-23S ITS, etc.) were also presented to demonstrate the genotype difference between the two species. Thus, we did not apply 16S rRNA gene sequence analysis in the early stage of our study.
Interestingly, two strains showed discordant results in the rpoB and hsp65 analysis. Two M. massiliense strains based on rpoB analysis were identified as M. abscessus by hsp65 analysis as described in a previous report (33). However, additional gene (sodA and 16S-23S ITS) analyses indicated that these two strains were M. massiliense. In such situations, although these strains may represent a very small proportion (1.4%), complementation with other gene analyses may be useful for precise identification. Either sodA or the 16S-23S ITS may be suitable for this purpose because these are frequently used and there are abundant sequence data.
Aside from the precise identification of M. abscessus and its related species, what led to our interest in these four species was their susceptibility to clarithromycin, which is administered orally. Among the many antimicrobial susceptibility profiles, an especially low MIC of clarithromycin (0.125 µg/ml) was observed for M. massiliense (4, 19). Based on the susceptibility testing, clarithromycin was used to treat patients who suffered injection-associated abscess formation without any combination (19). In addition, M. bolletii was reported to be naturally resistant to clarithromycin (1). Although we tested only 23 strains and more-comprehensive studies are needed, we observed some interesting results. Some of our results were concordant with previous reports in that seven M. massiliense strains, which were in the susceptible range of CLSI criteria, showed very low MICs (0.125 to 0.5 µg/ml). In addition, although only three strains were used, all M. bolletii strains were resistant to clarithromycin (MICs, 8 to 16 µg/ml). However, unlike the three highly resistant (MICs > 256 µg/ml) M. massiliense strains that had a mutation (A2058 or A2059) in the 23S rRNA gene, there was no mutation in resistant M. abscessus and M. bolletii strains. Furthermore, there was an "intermediate" group among M. abscessus strains. These results suggest that there are other mechanisms besides 23S rRNA gene mutation that confer clarithromycin resistance in these strains. Reports of a broad range of MICs (0.125 to 64 µg/ml) and of clarithromycin-resistant M. abscessus (41, 42) might have been brought about, in part, by such heterogeneity in the M. abscessus population, which comprises three strains with different susceptibilities to clarithromycin. Because we randomly selected strains and analyzed only two strains of M. bolletii in this study, we cannot comprehensively know the exact clarithromycin resistance rate of these three species at this moment. In addition, we cannot generalize that all M. bolletii strains are naturally resistant to clarithromycin. Thus, because the susceptibility depends on each strain, every isolate should be subjected to susceptibility testing.
The pathogenicity of M. massiliense was carefully described in an earlier report (4). We also suggest two lines of evidence that M. massiliense is pathogenic. First, 46 M. massiliense isolates of the Samsung Collection were collected from 99 patients over almost 2 years. There were 19 patients who gave repeated culture-positive results (from two to seven times). Although detailed information on these patients is not available and is out of the scope of this study, repeated positive cultures from respiratory specimens fulfill the basic criteria for diagnosis of NTM infection (5). Second, repeated incision and drainage could not eradicate M. massiliense in patients in the "injection-associated epidemic" (19). This reminds us of the intra-amoebal survival and growth of M. massiliense. If this mycobacterium can survive in tissue macrophages, simple curettage may not be sufficient to eradicate it. Intracellular survival and growth can play an important role, as in tuberculosis.
In conclusion, we evaluated the proportion of M. chelonae, M. abscessus, M. massiliense, and M. bolletii strains among Korean M. chelonae-M. abscessus group isolates by PCR sequencing and compared these results to hsp65 PCR-RFLP results. M. massiliense and M. bolletii accounted for the M. abscessus group II strains identified by hsp65 PRA and accounted for 46.5% and 1.6% of the M. chelonae-M. abscessus group strains analyzed, respectively. Repeated positive cultures from the patient's respiratory infection specimens suggest that there are considerable numbers of patients with M. massiliense pulmonary infection, which may be diagnosed as M. abscessus (or M. chelonae-M. abscessus group) infection, in South Korea.

ACKNOWLEDGMENTS
This work was supported by a 2007 grant from the SNUH Research
fund (04-2007-012-0). H.-Y. Kim, Y.-J. Yun, and C. G. Park were
supported by the second stage of the Brain Korea 21 Project.

FOOTNOTES
* Corresponding author. Mailing address: Department of Microbiology, Seoul National University College of Medicine, 28 Yongon-dong, Chongno-gu, Seoul 110-799, South Korea. Phone: (82) 2-740-8306. Fax: (82) 2-743-0881. E-mail:
yhkook{at}snu.ac.kr 
Published ahead of print on 27 August 2008. 

REFERENCES
1 - Adékambi, T., P. Berger, D. Raoult, and M. Drancourt. 2006. rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int. J. Syst. Evol. Microbiol. 56:133-143.[Abstract/Free Full Text]
2 - Adékambi, T., P. Colson, and M. Drancourt. 2003. rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria. J. Clin. Microbiol. 41:5699-5708.[Abstract/Free Full Text]
3 - Adékambi, T., and M. Drancourt. 2004. Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int. J. Syst. Evol. Microbiol. 54:2095-2105.[Abstract/Free Full Text]
4 - Adékambi, T., M. Reynaud-Gaubert, G. Greub, M. J. Gevaudan, B. La Scola, D. Raoult, and M. Drancourt. 2004. Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J. Clin. Microbiol. 42:5493-5501.[Abstract/Free Full Text]
5 - American Thoracic Society. 1997. Diagnosis and treatment of disease caused by nontuberculous mycobacteria. Am. J. Respir. Crit. Care Med. 156:S1-S25.[Medline]
6 - Brantley, J. S., A. L. Readinger, and E. S. Morris. 2006. Cutaneous infection with Mycobacterium abscessus in a child. Pediatr. Dermatol. 23:128-131.[CrossRef][Medline]
7 - Brown-Elliott, B. A., and R. J. Wallace, Jr. 2002. Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria. Clin. Microbiol. Rev. 15:716-746.[Abstract/Free Full Text]
8 - Catherinot, E., J. Clarissou, G. Etienne, F. Ripoll, J. F. Emile, M. Daffé, C. Perronne, C. Soudais, J. L. Gaillard, and M. Rottman. 2007. Hypervirulence of a rough variant of the Mycobacterium abscessus type strain. Infect. Immun. 75:1055-1058.[Abstract/Free Full Text]
9 - Centers for Disease Control and Prevention. 1999. Nontuberculous mycobacteria reported to the Public Health Laboratory Information System by state public health laboratories in the United States, 1993-1996. NTM Report 1-51. Centers for Disease Control and Prevention, Atlanta, GA.
10 - Clinical and Laboratory Standards Institute. 2003. Susceptibility testing of Mycobacteria, Nocardia, and other aerobic actinomycetes. Approved standard M24-A. National Committee for Clinical Laboratory Standards, Wayne, PA.
11 - Devallois, A., K. S. Goh, and N. Rastogi. 1997. Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species. J. Clin. Microbiol. 35:2969-2973.[Abstract]
12 - Dytoc, M. T., L. Honish, C. Shandro, P. T. Ting, L. Chui, L. Fiorillo, J. Robinson, A. Fanning, G. Predy, and R. P. Rennie. 2005. Clinical, microbiological, and epidemiological findings of an outbreak of Mycobacterium abscessus hand-and-foot disease. Diagn. Microbiol. Infect. Dis. 53:39-45.[CrossRef][Medline]
13 - Freudenberger, R. S., and S. M. Simafranca. 2006. Cutaneous infection with rapidly-growing mycobacterial infection following heart transplant: a case report and review of the literature. Transplant. Proc. 38:1526-1529.[CrossRef][Medline]
14 - Howard, S. T., E. Rhoades, J. Recht, X. Pang, A. Alsup, R. Kolter, C. R. Lyons, and T. F. Byrd. 2006. Spontaneous reversion of Mycobacterium abscessus from a smooth to a rough morphotype is associated with reduced expression of glycopeptidolipid and reacquisition of an invasive phenotype. Microbiology 152:1581-1590.[Abstract/Free Full Text]
15 - Huson, D. H., and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.[Abstract/Free Full Text]
16 - Inderlied, C. B., and G. E. Pfyffer. 2003. Susceptibility test methods: mycobacteria, p. 1149-1177. In P. R. Murray, E. J. Baron, J. H. Jorgensen, M. A. Pfaller, and R. H. Yolken (ed.), Manual of clinical microbiology, 8th ed. ASM Press, Washington, DC.
17 - Kim, B. J., S. H. Lee, M. A. Lyu, S. J. Kim, G. H. Bai, G. T. Chae, E. C. Kim, C. Y. Cha, and Y. H. Kook. 1999. Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J. Clin. Microbiol. 37:1714-1720.[Abstract/Free Full Text]
18 - Kim, E. K., T. S. Shim, C.-M. Lim, S. D. Lee, Y. Koh, W. S. Kim, W. D. Kim, and D. S. Kim. 2003. Clinical manifestations of pulmonary infection due to rapidly growing nontuberculous mycobacteria. Tuberc. Respir. Dis. 54:283-294.
19 - Kim, H. Y., Y. J. Yun, C. G. Park, D. H. Lee, Y. K. Cho, B. J. Park, S. I. Joo, E. C. Kim, Y. J. Hur, B. J. Kim, and Y. H. Kook. 2007. Outbreak of Mycobacterium massiliense infection associated with intramuscular injections. J. Clin. Microbiol. 45:3127-3130.[Abstract/Free Full Text]
20 - Koh, W. J., O. J. Kwon, K. Jeon, T. S. Kim, K. S. Lee, Y. K. Park, and G. H. Bai. 2006. Clinical significance of nontuberculous mycobacteria isolated from respiratory specimens in Korea. Chest 129:341-348.[CrossRef][Medline]
21 - König, B., I. Tammer, V. Sollich, and W. König. 2005. Intra- and interpatient variability of the hsp65 and 16S-23S intergenic gene region in Mycobacterium abscessus strains from patients with cystic fibrosis. J. Clin. Microbiol. 43:3500-3503.[Abstract/Free Full Text]
22 - Kusunoki, S., and T. Ezaki. 1992. Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov. Int. J. Syst. Bacteriol. 42:240-245.[Abstract/Free Full Text]
23 - Lee, H. W., M.-N. Kim, T. S. Shim, G. H. Bai, and C. H. Pai. 2002. Nontuberculous mycobacterial pulmonary infection in immunocompetent patients. Tuberc. Respir. Dis. 53:173-182.
24 - Lee, W. J., T. W. Kim, K. B. Shur, B. J. Kim, Y. H. Kook, J. H. Lee, and J. K. Park. 2000. Sporotrichoid dermatosis caused by Mycobacterium abscessus from a public bath. J. Dermatol. 27:264-268.[Medline]
25 - Meier, A., P. Kirschner, B. Springer, V. A. Steingrube, B. A. Brown, R. J. Wallace, Jr., and E. C. Böttger. 1994. Identification of mutations in 23S rRNA gene of clarithromycin-resistant Mycobacterium intracellulare. Antimicrob. Agents. Chemother. 38:381-384.[Abstract/Free Full Text]
26 - Metchock, B., F. S. Nolte, and R. J. Wallace, Jr. 1999. Mycobacterium, p. 399-437. In P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology, 7th ed. ASM Press, Washington, DC.
27 - Oh, W. S., K. S. Ko, J. H. Song, M. Y. Lee, S. Y. Ryu, S. Taek, K. T. Kwon, J. H. Lee, K. R. Peck, and N. Y. Lee. 2005. Catheter-associated bacteremia by Mycobacterium senegalense in Korea. BMC Infect. Dis. 5:107.[CrossRef][Medline]
28 - Petrini, B. 2006. Non-tuberculous mycobacterial infections. Scand. J. Infect. Dis. 38:246-255.[CrossRef][Medline]
29 - Pulcini, C., E. Vandenbussche, I. Podglajen, W. Sougakoff, C. Truffot-Pernot, A. Buu-Hoï, E. Varon, and J. L. Mainardi. 2006. Hip prosthesis infection due to Mycobacterium wolinskyi. J. Clin. Microbiol. 44:3463-3464.[Abstract/Free Full Text]
30 - Roth, A., U. Reischl, A. Streubel, L. Naumann, R. M. Kroppenstedt, M. Habicht, M. Fischer, and H. Mauch. 2000. Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. J. Clin. Microbiol. 38:1094-1104.[Abstract/Free Full Text]
31 - Schröder, K. H., L. Naumann, R. M. Kroppenstedt, and U. Reischl. 1997. Mycobacterium hassiacum sp. nov., a new rapidly growing thermophilic mycobacterium. Int. J. Syst. Bacteriol. 47:86-91.[Abstract/Free Full Text]
32 - Sermet-Gaudelus, I., M. Le Bourgeois, C. Pierre-Audigier, C. Offredo, D. Guillemot, S. Halley, C. Akoua-Koffi, V. Vincent, V. Sivadon-Tardy, A. Ferroni, P. Berche, P. Scheinmann, G. Lenoir, and J. L. Gaillard. 2003. Mycobacterium abscessus and children with cystic fibrosis. Emerg. Infect. Dis. 9:1587-1591.[Medline]
33 - Simmon, K. E., J. I. Pounder, J. N. Greene, F. Walsh, C. M. Anderson, S. Cohen, and C. A. Petti. 2007. Identification of an emerging pathogen, Mycobacterium massiliense, by rpoB sequencing of clinical isolates collected in the United States. J. Clin. Microbiol. 45:1978-1980.[Abstract/Free Full Text]
34 - Song, J. Y., J. W. Sohn, H. W. Jeong, H. J. Cheong, W. J. Kim, and M. J. Kim. 2006. An outbreak of post-acupuncture cutaneous infection due to Mycobacterium abscessus. BMC Infect. Dis. 6:6.[CrossRef][Medline]
35 - Springer, B., E. C. Böttger, P. Kirschner, and R. J. Wallace, Jr. 1995. Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. Int. J. Syst. Bacteriol. 45:262-267.[Abstract/Free Full Text]
36 - Springer, B., L. Stockman, K. Teschner, G. D. Roberts, and E. C. Böttger. 1996. Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods. J. Clin. Microbiol. 34:296-303.[Abstract]
37 - Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.[Abstract/Free Full Text]
38 - Telenti, A., F. Marchesi, M. Balz, F. Bally, E. C. Böttger, and T. Bodmer. 1993. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J. Clin. Microbiol. 31:175-178.[Abstract/Free Full Text]
39 - Tsukamura, M., N. Kita, H. Shimoide, H. Arakawa, and A. Kuze. 1988. Studies on the epidemiology of nontuberculous mycobacteriosis in Japan. Am. Rev. Respir. Dis. 137:1280-1284.[Medline]
40 - Viana-Niero, C., K. V. Lima, M. L. Lopes, M. C. Rabello, L. R. Marsola, V. C. Brilhante, A. M. Durham, and S. C. Leão. 2008. Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures. J. Clin. Microbiol. 46:850-855.[Abstract/Free Full Text]
41 - Wallace, R. J., Jr., A. Meier, B. A. Brown, Y. Zhang, P. Sander, G. O. Onyi, and E. C. Böttger. 1996. Genetic basis for clarithromycin resistance among isolates of Mycobacterium chelonae and Mycobacterium abscessus. Antimicrob. Agents. Chemother. 40:1676-1681.[Abstract]
42 - Yang, S. C., P. R. Hsueh, H. C. Lai, L. J. Teng, L. M. Huang, J. M. Chen, S. K. Wang, D. C. Shie, S. W. Ho, and K. T. Luh. 2003. High prevalence of antimicrobial resistance in rapidly growing mycobacteria in Taiwan. Antimicrob. Agents Chemother. 47:1958-1962.[Abstract/Free Full Text]
Journal of Clinical Microbiology, October 2008, p. 3384-3390, Vol. 46, No. 10
0095-1137/08/$08.00+0 doi:10.1128/JCM.00319-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
This article has been cited by other articles:
-
Jeon, K., Kwon, O J., Lee, N. Y., Kim, B.-J., Kook, Y.-H., Lee, S.-H., Park, Y. K., Kim, C. K., Koh, W.-J.
(2009). Antibiotic Treatment of Mycobacterium abscessus Lung Disease: A Retrospective Analysis of 65 Patients. Am. J. Respir. Crit. Care Med.
180: 896-902
[Abstract]
[Full Text]
-
Koh, W.-J., Kwon, O. J., Lee, N. Y., Kook, Y.-H., Lee, H.-K., Kim, B.-J.
(2009). First Case of Disseminated Mycobacterium bolletii Infection in a Young Adult Patient. J. Clin. Microbiol.
47: 3362-3366
[Abstract]
[Full Text]
-
Leao, S. C., Tortoli, E., Viana-Niero, C., Ueki, S. Y. M., Lima, K. V. B., Lopes, M. L., Yubero, J., Menendez, M. C., Garcia, M. J.
(2009). Characterization of Mycobacteria from a Major Brazilian Outbreak Suggests that Revision of the Taxonomic Status of Members of the Mycobacterium chelonae-M. abscessus Group Is Needed. J. Clin. Microbiol.
47: 2691-2698
[Abstract]
[Full Text]
-
Macheras, E., Roux, A.-L., Ripoll, F., Sivadon-Tardy, V., Gutierrez, C., Gaillard, J.-L., Heym, B.
(2009). Inaccuracy of Single-Target Sequencing for Discriminating Species of the Mycobacterium abscessus Group. J. Clin. Microbiol.
47: 2596-2600
[Abstract]
[Full Text]
-
Duarte, R. S., Lourenco, M. C. S., Fonseca, L. d. S., Leao, S. C., Amorim, E. d. L. T., Rocha, I. L. L., Coelho, F. S., Viana-Niero, C., Gomes, K. M., da Silva, M. G., de Oliveira Lorena, N. S., Pitombo, M. B., Ferreira, R. M. C., de Oliveira Garcia, M. H., de Oliveira, G. P., Lupi, O., Vilaca, B. R., Serradas, L. R., Chebabo, A., Marques, E. A., Teixeira, L. M., Dalcolmo, M., Senna, S. G., Sampaio, J. L. M.
(2009). Epidemic of Postsurgical Infections Caused by Mycobacterium massiliense. J. Clin. Microbiol.
47: 2149-2155
[Abstract]
[Full Text]
-
Zelazny, A. M., Root, J. M., Shea, Y. R., Colombo, R. E., Shamputa, I. C., Stock, F., Conlan, S., McNulty, S., Brown-Elliott, B. A., Wallace, R. J. Jr., Olivier, K. N., Holland, S. M., Sampaio, E. P.
(2009). Cohort Study of Molecular Identification and Typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. J. Clin. Microbiol.
47: 1985-1995
[Abstract]
[Full Text]
-
Nash, K. A., Brown-Elliott, B. A., Wallace, R. J. Jr.
(2009). A Novel Gene, erm(41), Confers Inducible Macrolide Resistance to Clinical Isolates of Mycobacterium abscessus but Is Absent from Mycobacterium chelonae. Antimicrob. Agents Chemother.
53: 1367-1376
[Abstract]
[Full Text]