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Journal of Clinical Microbiology, December 2008, p. 3980-3986, Vol. 46, No. 12
0095-1137/08/$08.00+0 doi:10.1128/JCM.00339-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Departments of Medicine,1 Biomathematics,2 Urology, David Geffen School of Medicine at the University of California—Los Angeles, Los Angeles, California 90095,3 Veterans Affairs Greater Los Angeles Healthcare Center, Los Angeles, California 900734
Received 18 February 2008/ Returned for modification 6 July 2008/ Accepted 30 September 2008
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In general, Escherichia coli is the most common uropathogen, responsible for approximately 80% of UTIs (2, 7, 12). Non-E. coli infection is considerably more common (44% to 72%) in the subset of patients with complicated UTIs (7). UTIs are defined as complicated when they occur in patients with immunosuppression, including diabetes, or in the context of structural or functional abnormalities of the urinary tract.
Complicated UTIs, due to either intrinsic or extrinsic urinary tract abnormalities, are becoming increasingly common due, in part, to increases in the elderly population. For example, benign prostatic hyperplasia is an intrinsic obstructive abnormality affecting >50% of the male population over 60, and 40% of benign prostatic hyperplasia patients will develop sufficient obstruction to require a prostatic tissue-ablative intervention, amounting to nearly 400,000 prostate procedures per year (5). Other intrinsic abnormalities potentially increasing the risk of UTI include congenital anomalies, a neurogenic bladder, and fistulae involving the urinary tract. Extrinsic abnormalities, such as stents and catheters, are also important risk factors for UTI. Catheter-associated UTI is responsible for 40% of nosocomial infections, making it the most common cause of nosocomial infection. Catheter-associated UTIs account for more than 1 million cases in hospitals and nursing homes annually and often involve uropathogens other than E. coli (2). While the epidemiology and pathogenic mechanisms of uropathogenic E. coli have been extensively studied, little is known about the associations between other uropathogens and the risk factors for their acquisition.
Uropathogens differ in terms of the virulence factors and pathogenic mechanisms that allow them to colonize and infect the urinary tract. For example, some uropathogens, especially Proteus spp., make the enzyme urease, which hydrolyzes urea to ammonia and carbon dioxide. The release of ammonia raises the urinary pH, which favors the precipitation of urinary salts in the form of kidney or bladder stones, which frequently serve as a nidus for recurrent P. mirabilis infection. Another mechanism for colonization of the urinary tract, particularly relevant to stones and other foreign bodies, is biofilm formation. Pseudomonas aeruginosa is well known to be adept at biofilm formation because of genes, such as alginase, that are involved in the formation of the exopolysaccharide matrix of the biofilm. Nosocomial UTIs frequently involve organisms selected for by their antibiotic resistance mechanisms, such as vancomycin-resistant enterococci and extended-spectrum beta-lactamase-producing Klebsiella pneumoniae (3, 10). The emergence of antibiotic resistance in the hospital setting has frequently been associated with UTIs (11). However, comparatively little is known about the associations between specific uropathogen species and patient populations with risk factors for UTI (1, 6, 8, 13, 14).
We conducted an exploratory case-case comparison study using a novel microbiological approach: we started with the urine isolate and then asked which host characteristics were negatively or positively associated with a particular uropathogen species. Urine specimens containing a diverse set of uropathogen species were prospectively collected, and host characteristics of the corresponding patients were then obtained by chart review. We found that certain uropathogens, especially P. aeruginosa, were strongly associated with particular host characteristics, including the male gender, recent antibiotic therapy, prior urinary tract procedures, and a neurogenic bladder. This is the first study we are aware of to examine the relationship between particular uropathogen species and host characteristics.
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Data collection. A review of medical records was performed to acquire information on 15 different characteristics of the patients from whom the specimens were obtained. These consisted of (i) gender, (ii) age, (iii) prior UTI within the last year with a culture density greater than 105 CFU/ml, (iv) prior antibiotic therapy within the past month, (v) prior procedures (surgical procedures at any time and nonsurgical procedures within the past year), (vi) prior urinary tract procedures (surgical procedures at any time and nonsurgical procedures within the past year), (vii) upper urinary tract obstruction (e.g., hydronephrosis, hydroureter, kidney or ureteral stone, vesicoureteral reflux, ureteropelvic junction obstruction) within the past year, (viii) lower urinary tract obstruction (e.g., bladder stone, enlarged prostate, urethral stone or stricture) within the past year, (ix) upper urinary tract foreign body (e.g., ureteral stent, nephrostomy tube) within the past year, (x) lower urinary tract foreign body (e.g., intermittent or indwelling catheterization, suprapubic catheter) within the past year, (xi) diabetes at the time of infection, (xii) immunocompromised state (e.g., bone marrow or solid-organ transplantation, immunosuppressant therapy, human immunodeficiency virus, liver failure, bed-bound nursing home patient) at the time of infection, (xiii) history of neurogenic bladder, (xiv) pregnancy at the time of infection, and (xv) urinary tract reconstruction (e.g., renal transplant, prostatectomy, appendicovesicostomy, ureteroneocystostomy) at any time. If there was no mention of a particular host characteristic in the medical record, it was assumed that the patient did not have that host characteristic. The medical record of each isolate was also reviewed for antibiotic susceptibility data.
Data analysis. (i) Bivariate. Each host characteristic was compared one at a time across uropathogen groups. The exact overall (omnibus) chi-square P value across groups was computed using specialized software (Stat Xact, version 8, 2007, Cytel Inc., Cambridge MA). Under the Fisher least-significant-difference criterion, for host characteristics that were significant overall across groups, exact P values were computed by using Fisher's exact test for pairwise comparisons between the uropathogen group with the lowest percentage and each of the other uropathogen groups. To further explore these findings, chi-square test comparisons were also made to see if there were significant differences between host characteristics in patients with E. coli versus P. aeruginosa infections.
For descriptive purposes only, the log of the relative ratio was reported where the relative ratio is defined as the proportion with the given host characteristic in each uropathogen group divided by the overall sample proportion with that host characteristic. The group proportions were divided by the overall proportion in order to make standardized, qualitative comparisons across host characteristics. If the proportion with a given host characteristic was the same across groups, the relative ratio would be 1 and its log would be zero. For age, the relative ratio was defined as the mean age in each uropathogen group divided by the overall mean.
In addition to chi square tests, the corresponding 95% confidence intervals were reported for selected important host characteristic proportions by uropathogen group.
(ii) Multivariate. A classification and regression tree (CART) model (Answer Tree, version 3.0; SPSS Inc., Chicago, IL) was used to simultaneously identify host characteristic profiles that distinguish among E. coli, P. aeruginosa, other gram-negative bacteria, and gram-positive bacteria. Equal prior probabilities were assumed for the four bacterial groups in this model so that a terminal node's predictive classification would be assigned to the bacterial group whose proportion exceeded its overall proportion. A 1,000-fold resampling cross-validation of the tree was performed to test whether the tree nodes were significant. The overall absolute proportions of these four bacterial groups were not necessarily representative of the true absolute risks of infection for the population.
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TABLE 1. Host characteristics of patients with UTIs due to various bacterial groups
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Comparison of patients with E. coli and P. aeruginosa infections revealed statistically significant differences in the proportion with recent antibiotic therapy, as well as in six of the host characteristics directly relevant to the urinary tract, including urinary tract procedures, a neurogenic bladder, and obstruction of, and a foreign body in, the upper and/or lower urinary tract (Table 2). The only host characteristics relevant to the urinary tract in which patients with E. coli and P. aeruginosa infections did not differ were a prior history of UTI and urinary tract reconstruction.
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TABLE 2. Comparison of host characteristics in E. coli versus P. aeruginosa UTIsa
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FIG. 1. Log relative ratio of host characteristics in UTIs due to four uropathogens. The relative ratio, defined as the proportion with the given host characteristic divided by the overall sample proportion with that characteristic, is compared descriptively across characteristics for four uropathogens: Escherichia coli (Ec), Klebsiella pneumoniae (Kp), Pseudomonas aeruginosa (Pa), and Proteus mirabilis (Pm). A log relative ratio of zero results from a relative ratio of 1, indicating no difference in the proportion with a host characteristic compared with the overall patient population. Host characteristics are arranged from lowest (left) to highest (right) cumulative deviations of the log relative ratio from zero. For example, patient age was similar in UTIs due to all four uropathogens. In contrast, there were strong positive (P. aeruginosa) and negative (E. coli and K. pneumoniae) associations with a foreign body in the upper urinary tract. One or two asterisks indicate host characteristics with significant (P < 0.1) or highly significant (P < 0.05) differences among uropathogen groups. Abx, antibiotic therapy.
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FIG. 2. Host characteristics and uropathogen types. Percentages (±95% confidence intervals) of patients with four host characteristics were compared for patient groups with UTIs due to various uropathogens (C+, Citrobacter spp.; Ef+, Enterococcus spp., Ea, Enterobacter aerogenes; Ec, Escherichia coli; El, Enterobacter cloacae; Kp, Klebsiella pneumoniae; ME, miscellaneous Enterobacteriaceae [Aerococcus urinae, Hafnia alvei, undifferentiated Klebsiella spp., Klebsiella oxytoca, Morganella morganii, Providencia alcalifaciens, Providencia stuartii, and Serratia marcescens]; Pa, Pseudomonas aeruginosa; Pm, Proteus mirabilis; PY, polymicrobial specimens [a combination of any of the aforementioned 16 isolates as well as any of the following: Acinetobacter baumanii, Alcaligenes xylosoxidans, Pseudomonas fluorescens, Chryseobacterium indologenes, viridans streptococci, Staphylococcus aureus, or lactose-positive, gram-positive rods]). Associations with P. aeruginosa UTI were found for gender (A), prior antibiotic therapy (C), and urinary tract procedures (D). An association was also found between P. mirabilis UTI and diabetes (B).
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FIG. 3. Classification tree showing host characteristics most strongly associated with categories of uropathogens. A multivariate CART analysis was performed to identify the host characteristics most strongly associated with uropathogen groups. The tree follows an equal-prior-probabilities rule, in that predictions are relative to the proportions in the root node and thus are not biased by initial group sizes. The shaded band in each node indicates the predicted (most likely) bacterial group based on equal prior probabilities. Polybacterial specimens were not included in this analysis. Uropathogen group abbreviations: gneg, gram-negative bacteria; gpos, gram-positive bacteria; Ec, E. coli; Pa, P. aeruginosa.
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FIG. 4. Associations between antibiotic-susceptible uropathogens and host characteristics. The percentages of samples from patients who were male (A), received antibiotic therapy within the past month (B), or had a history of urinary tract procedures (C) among urine specimens containing antibiotic-susceptible uropathogens (E. coli, P. aeruginosa, and all bacteria) are shown. Differences between E. coli and P. aeruginosa were significant (P < 0.05) in all cases except for cefepime susceptibility in patients with prior antibiotic therapy (B). The higher percentage of host characteristics in UTIs due to P. aeruginosa persisted despite the inclusion of antibiotic-susceptible organisms only in the analysis, indicating that the association with host characteristics is independent of antibiotic susceptibility. Ec, E. coli; Pa, P. aeruginosa; Pip-Tazo, piperacillin-tazobactam.
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The association with antibiotic therapy within the past month in patients with P. aeruginosa infections might suggest that selection for antibiotic-resistant uropathogens was an important factor in determining why patients at risk for UTI acquire particular uropathogens. Medical records indicated that 24% of patients had received antibiotics within 1 month of specimen collection, and we acknowledge that this may be an underestimate resulting from our method of data collection. One explanation for this association is that P. aeruginosa is intrinsically resistant to many of the antibiotics these patients received. However, two lines of evidence suggest that antibiotic resistance is only a partial explanation for our results. First, the associations between P. aeruginosa infection and gender, recent antibiotic therapy, and prior urinary tract procedures persisted even after data were analyzed using only antibiotic-susceptible organisms (Fig. 4). Second, CART analysis revealed that the male gender, an age of >27 years, and a prior urinary tract procedure were more strongly associated with P. aeruginosa infection than recent antibiotic therapy (Fig. 3). An alternative explanation for the relationship between P. aeruginosa UTIs and antibiotic therapy is that the latter leads to an alteration in the resident microflora, facilitating colonization with P. aeruginosa prior to UTI.
Some of the UTIs in the study sample were probably related to an indwelling bladder catheter. Thirty percent of patients had a foreign body in the lower urinary tract, the most common being a bladder catheter. Catheters and other foreign bodies in the urinary tract predispose to UTI by violating natural barriers to infection (urethral sphincter) and providing a nidus for infection by serving as a substrate for biofilm formation. Most uropathogens are able to form biofilms, which is reflected in the fact that no single bacterial type was significantly associated with a lower foreign body (Table 1). Comparatively little was known about the prevalence of non-E. coli uropathogens in patients with complicated UTIs (1, 6, 8, 13, 14). In a prospective study of bacteriuria in patients with chronic indwelling urethral catheters, the most common isolates were enterococci, P. aeruginosa, and coagulase-negative staphylococci (14). In the same study, the organism that caused infections of the longest duration was Providencia stuartii. P. stuartii was also the most common bacterial species isolated in a prospective study of 47 chronically catheterized women who underwent weekly urine culture (13). In a study of 54 patients with spinal cord injuries who were undergoing intermittent catheterization, a variety of uropathogens were associated with UTIs in males; of these, E. coli composed only 18% (1). This contrasts with the UTIs of females, where E. coli accounted for 53% of cases, the rest being due to Klebsiella, Enterococcus, and other species (1). Our study complements and extends previously published studies of the microbiology of complicated UTIs.
This case-case comparison study does not address whether certain host characteristics predispose to infection with particular uropathogens. A population-based study would be required in order to determine which host characteristics are predictive of specific uropathogens. Although the only basis for specimen selection was the uropathogen species in the specimen, different results might be observed in other patient populations. Our study sample was predominantly an older group (mean age, 55), with only 8.2% of patients under the age of 18 years. Furthermore, the UCLA Medical Center is a tertiary referral center, so patients with urological disorders may be overrepresented in this study, as evidenced by the relatively high percentage of patients who had undergone surgery or another procedure (37%).
This is the first study we are aware of to systematically examine the association between uropathogen species and host characteristics. The current study should be considered exploratory in nature but is sufficient to allow hypotheses to be generated regarding the relationship between particular uropathogen species and characteristics of the host that predispose to infection. Additional studies involving larger numbers of patients will be needed to confirm these data, examine the hypotheses, and improve the classification accuracy.
Published ahead of print on 8 October 2008. ![]()
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