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Journal of Clinical Microbiology, April 2009, p. 1046-1049, Vol. 47, No. 4
0095-1137/09/$08.00+0 doi:10.1128/JCM.01480-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Robert C. George,2 on behalf of the South West Pneumococcus Study Group
Department of Microbiology, Musgrove Park Hospital, Taunton, TA1 5DA,1 Respiratory and Systemic Infections Department, Health Protection Agency Centre for Infections, 61 Colindale Road, London NW9 5EQ,2 Vaccine Evaluation Unit, Health Protection Agency South West, Gloucestershire Royal Hospital, Gloucester, GL1 3NN,3 Health Protection Agency South West, Tamar Science Park, 1 Davy Road, Derriford, Plymouth, PL6 8BX,4 Health Protection Agency South West Regional Laboratory, Bristol Royal Infirmary, Bristol BS2 8HW, United Kingdom5
Received 1 August 2008/ Returned for modification 13 October 2008/ Accepted 3 February 2009
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A relatively new, rapid immunochromatographic test that detects C polysaccharide antigen in urine (Binax NOW Streptococcus pneumoniae; Binax, Inc., Portland, ME) has good sensitivity and is very specific in adult patients with invasive pneumococcal infection (4, 11, 16).
Several PCR methods for the detection of Streptococcus pneumoniae have been developed and evaluated. In general, when performed on sputum samples they have good sensitivity but poor specificity (12, 17). In order to overcome the latter problem, PCR assays have been evaluated on blood samples (5, 8, 14, 15), giving excellent specificity but relatively poor sensitivity. Consequently, in an attempt to improve sensitivity but maintain good specificity, we have devised a dual-PCR testing protocol that tests for two pneumococcal targets (lytA and ply) in duplicate samples.
In the study reported here, we directly compare the Binax NOW urinary antigen test to the dual-PCR testing protocol on EDTA blood samples for the diagnosis of serious S. pneumoniae infections (pneumonia and/or bacteremia). The tests then were applied to identifying S. pneumoniae as the cause of nonbacteremic community-acquired pneumonia.
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Patients formed three broad groups: those with pneumococcal bacteremia, mostly presenting with community-acquired pneumonia; those who presented with community-acquired pneumonia but had negative blood cultures; and control patients with other community-acquired septicemic infections without pneumonia (or with pneumonia if it could be attributed clinically to the blood culture isolate [e.g., Streptococcus pyogenes]).
Pneumonia was defined as an acute illness with the presence of new or progressive infiltrates on chest radiograph, plus at least two of the following: fever, cough, dyspnea, or pleuritic chest pain. Blood culture-negative pneumonias were divided, according to chest radiograph results, the white blood cell (WBC) count, and the amount of C-reactive protein (CRP), into two subgroups in an attempt to indicate the relative likelihood of S. pneumoniae being the causative organism. The group designated likely pneumococcal infection had lobar/focal (unilateral) consolidation on the chest radiograph and
15 x 109 WBC/liter (with
60% neutrophils) or
8 mg/liter CRP. The possible pneumococcal infection group had either (i) lobar/focal, unilateral consolidation on the chest radiograph and <15 x 109 WBC/liter (or
15 x 109 WBC/liter but with <60% neutrophils) and
8 mg/liter CRP, or (ii) patchy or widespread, bilateral consolidation on the chest radiograph and
15 x 109 WBC/liter (with
60% neutrophils) or
8 mg/liter CRP.
Patients were included only if samples of EDTA-blood and urine were obtained prior to, or within 24 h of, starting appropriate antibiotic therapy. The urine samples were tested prospectively for pneumococcal antigen, whereas the EDTA-blood samples were stored at or below –20°C until later analysis.
The Binax NOW S. pneumoniae urinary antigen tests were performed according to the manufacturer's instructions and read after 15 min.
The methods for the two pneumococcal PCRs, the pneumolysin-targeted TaqMan assay and autolysin-targeted LightCycler assay, have been described previously (14, 15). All EDTA blood samples (200-µl volume) were extracted using the MagNA Pure Total NA isolation system (Roche Diagnostics) by following the manufacturer's instructions. The sample was eluted in 100 µl of elution buffer. DNA extracts were frozen in the MagNA Pure sample cartridges at –80°C until tested.
The dual-PCR testing protocol used for this study was as follows. All samples were tested in duplicate, using both PCR assays, before scoring the results. Any sample positive by both assays, either in one or both duplicates, was scored as positive for pneumococcal infection. Any sample negative by both assays in both duplicates was scored as negative, unless the autolysin PCR assay's internal positive control indicated inhibition, in which case the sample was reextracted and retested with both PCR assays. For samples for which there was a definite discrepancy between the two PCR assays, the duplicates were repeated and scored as appropriate. To score the overall PCR protocol as positive requires at least one positive ply assay and at least one positive lytA assay, or at least two positive assays for either ply or lytA. Table 1 gives a full description of the individual assay results and their overall interpretation.
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TABLE 1. Pneumococcal PCR testing protocol: interpretation of test results
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Overall, pneumococcal urinary antigen was detected in 66 of 80 bacteremic pneumococcal cases, giving a test sensitivity of 82.5% (95% confidence interval [CI], 72.5 to 90%). The dual-PCR protocol was positive for 31 of 60 bacteremic pneumococcal cases, giving a test sensitivity of 52% (95% CI, 38.5 to 65%; P < 0.0001). These test results are shown in Table 2.
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TABLE 2. Comparison of results from pneumococcal urine antigen test and blood dual-PCR protocol in the overall study groupa
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Both tests also were applied to identifying a cause for nonbacteremic community-acquired pneumonia. In 47 patients classified clinically as having likely pneumococcal pneumonia and who had both tests performed, urinary antigen was detected significantly more often than was a positive result by the dual-PCR protocol (15 [32%] cases and 4 [8.5%] cases, respectively [P = 0.005]). For 30 patients classified clinically as having possible pneumococcal pneumonia and who had both tests performed, urinary antigen also was detected more often than a positive result was achieved by the dual-PCR protocol (six [20%] cases and two [6.5%] cases, respectively), but this was not statistically significant (P = 0.13). Of the 21 PCR-positive cases, only 1 did not have detectable urinary antigen.
Similar results were seen in the larger groups of patients with nonbacteremic community-acquired pneumonia who had either antigen, PCR, or both tests performed (Table 2). However, in this larger group a slightly smaller proportion of patients with likely pneumococcal pneumonia had detectable urinary antigen.
Of the patients with a positive result by the PCR protocol, three patients with pneumococcal bacteremia, three patients with culture-negative pneumonia, and one control patient were positive for lytA alone. No patient in this study was positive for ply alone. There was no sample in which the autolysin PCR assay's internal positive control indicated inhibition.
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Several studies of the Binax NOW S. pneumoniae urine antigen test have demonstrated that it performs well in the diagnosis of bacteremic pneumococcal infections in adults. It has good sensitivity, ranging from 77 to 87% (1-4, 6, 9, 11, 16). Specificities of 97 to 100% are reported from studies using control groups with nonpneumococcal bacteremia or noninfectious disorders (1, 4, 11, 16). Briones et al. also included a control group of patients with chronic obstructive pulmonary disease or asthma and found that the specificity was lower (92%); the 12 patients with detectable antigen had exacerbations of chronic obstructive pulmonary disease and may have been colonized with S. pneumoniae (1).
PCR methods for the detection of S. pneumoniae DNA, when performed on sputum or other respiratory samples, have good rates of positivity (70 to 100%) but poor specificity (42 to 66%) (2, 12, 17). The latter problem may be overcome by performing PCR assays on blood samples, with several studies reporting excellent specificity (97 to 100%) but at the expense of relatively poor sensitivity (35 to 55%) (5, 8, 14, 15).
The development of our dual-PCR protocol, which was performed on blood, has increased test sensitivity (52%) in patients with bacteremic pneumococcal infections compared to that of the previous individual pneumolysin-targeted TaqMan assay (44%) or the autolysin-targeted LightCycler assay (43%). However, it still is significantly less sensitive than the Binax urinary antigen test (82%). The specificity of the dual-pneumococcal PCR protocol (96%) is similar to that of urinary antigen detection, and it also is similar to those of the individual PCR assays reported previously (14, 15).
In one study of pneumonia in adults, in 15 patients with definite pneumococcal pneumonia the apparent sensitivities of sputum PCR and urine antigen detection were comparable (approximately 75%), but the sputum PCR assays had poor specificity (2). Michelow et al. compared PCR on blood samples and urine antigen detection using the Binax NOW S. pneumoniae test in children with lower respiratory tract infection and, in the 12 children with culture-confirmed pneumococcal pneumonia, the two tests had comparable sensitivities (88 to 92%) (10). Our larger study of bacteremic adult patients gives a comparable sensitivity (82%) for the Binax NOW urine antigen test, but the sensitivity of the dual-PCR protocol (52%) is not as good. This could be due partly to the sample processing procedure used in the Michelow study, in which the blood samples were stabilized with guanidinium within 3 h of collection. The samples in our study were retrieved from hematology departments after blood counts had been completed and then stored (frozen) prior to processing.
Having evaluated the pneumococcal dual-PCR protocol in bacteremic patients and compared it to the Binax NOW urine antigen test, we directly compared the ability of both tests to give a specific etiological diagnosis for patients with nonbacteremic community-acquired pneumonia. These patients were categorized as having likely or possible pneumococcal pneumonia on the basis of the type of shadowing on the chest radiograph and laboratory markers of bacterial infection (WBC, neutrophils, and CRP). We did not use sputum Gram stains or culture results in our categorization, as they would not be available on admission for many patients. For 77 patients with likely or possible pneumococcal pneumonia who had both tests performed, the positivity of urine antigen (27%) was significantly greater than that of the dual-PCR protocol (8%). The dual-PCR protocol was positive in only one of the patients who did not have detectable urinary antigen, so it does not really contribute anything more to diagnosis. In our larger group of patients who had one or both tests performed (Table 2), the results were almost the same. Within the group of patients with nonbacteremic community-acquired pneumonia, our clinical distinction between the likely pneumococcal and possible pneumococcal groups does not indicate which types of patient are more likely to have a positive test result and so would not help to make the best use of these expensive diagnostic tests.
There have been several other diagnostic studies of community-acquired pneumonia in adults that include groups of patients for which the causative organism has not been definitively confirmed by the culture of blood or pleural fluid. Overall, immunochromatographic pneumococcal antigen detection in urine appears to be the most accurate predictor of pneumococcal infection. The Binax NOW S. pneumoniae urine antigen test is positive in 18 to 41% of such cases (1-4, 6, 7, 9, 11, 13).
Selection bias in the subgroups of nonbacteremic pneumonias makes it difficult to compare studies and to determine accurately what proportion of all community-acquired pneumonia is caused by the pneumococcus. For example, we did not collect all consecutive pneumonia patients admitted to our hospital units during the study period. In our study, selection was dependent on samples being taken within 24 h of starting antibiotic treatment, which was not always so in other studies.
Compared to PCR, even with a complex dual-target testing protocol, the Binax NOW S. pneumoniae urinary antigen test is a much better test for the early diagnosis of bacteremic pneumococcal infections in adults. The Binax NOW test also performs better in cases of nonbacteremic community-acquired pneumonia and will more accurately detect those cases caused by S. pneumoniae.
Other members of the South West Pneumococcus Study Group are Keith Cartwright, Rhonwen Morris, and James Stuart (Health Protection Agency South West, United Kingdom); Rob Heyderman, John Leeming, and Martin Williams (Health Protection Agency South West Regional Laboratory, Bristol, United Kingdom); and Adam Finn, Margaret Fletcher, and Caroline Trotter (University of Bristol, United Kingdom).
Published ahead of print on 18 February 2009. ![]()
Present address: Department of Microbiology, Gold Coast Hospital, 108 Nerang Street, Southport, Queensland 4215, Australia. ![]()
Other members of the South West Pneumococcus Study Group are listed in the acknowledgements. ![]()
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